NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|518680386|ref|WP_019842079|]
View 

MULTISPECIES: antirestriction protein [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Antirestrict super family cl03947
Antirestriction protein; This family includes various protein that are involved in ...
 64-155 5.98e-29

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


The actual alignment was detected with superfamily member pfam03230:

Pssm-ID: 427206  Cd Length: 92  Bit Score: 101.94  E-value: 5.98e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518680386   64 YDGGEWDFYELSNGGYFMAPNSREHYRISVQGNYFDGLLSAEAAGMVATSFVLAQLANSNLpfSERCSAYYHQLFDYASG 143
Cdd:pfam03230   3 YGGGFWHFYTLSNGGLYMAPDSDDRYRLEVAGNGFDGEVSADAAGIIATLFALSHLAFETE--DDALAERYHRLREYALQ 80

                          90
                  ....*....|..
gi 518680386  144 HQEYEQFRAAID 155
Cdd:pfam03230  81 HPEAAAIYRAID 92
 
Name Accession Description Interval E-value
Antirestrict pfam03230
Antirestriction protein; This family includes various protein that are involved in ...
 64-155 5.98e-29

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


Pssm-ID: 427206  Cd Length: 92  Bit Score: 101.94  E-value: 5.98e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518680386   64 YDGGEWDFYELSNGGYFMAPNSREHYRISVQGNYFDGLLSAEAAGMVATSFVLAQLANSNLpfSERCSAYYHQLFDYASG 143
Cdd:pfam03230   3 YGGGFWHFYTLSNGGLYMAPDSDDRYRLEVAGNGFDGEVSADAAGIIATLFALSHLAFETE--DDALAERYHRLREYALQ 80

                          90
                  ....*....|..
gi 518680386  144 HQEYEQFRAAID 155
Cdd:pfam03230  81 HPEAAAIYRAID 92
 
Name Accession Description Interval E-value
Antirestrict pfam03230
Antirestriction protein; This family includes various protein that are involved in ...
 64-155 5.98e-29

Antirestriction protein; This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.


Pssm-ID: 427206  Cd Length: 92  Bit Score: 101.94  E-value: 5.98e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518680386   64 YDGGEWDFYELSNGGYFMAPNSREHYRISVQGNYFDGLLSAEAAGMVATSFVLAQLANSNLpfSERCSAYYHQLFDYASG 143
Cdd:pfam03230   3 YGGGFWHFYTLSNGGLYMAPDSDDRYRLEVAGNGFDGEVSADAAGIIATLFALSHLAFETE--DDALAERYHRLREYALQ 80

                          90
                  ....*....|..
gi 518680386  144 HQEYEQFRAAID 155
Cdd:pfam03230  81 HPEAAAIYRAID 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH