NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|518684242|ref|WP_019845935|]
View 

YfgM family protein [Dickeya zeae]

Protein Classification

YfgM family protein( domain architecture ID 11459477)

YfgM family protein is a tetratricopeptide repeat protein similar to Escherichia coli Ancillary SecYEG translocon subunit that may mediate protein transfer from the SecYEG translocon to the periplasmic chaperone network via its periplasmic C-terminal region

CATH:  1.25.40.10
Gene Ontology:  GO:0005515|GO:0044877
PubMed:  22404999|21153002|10517866|30708253
SCOP:  4001344
TCDB:  3.A.5

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 1-204 1.08e-71

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


:

Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 216.26  E-value: 1.08e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   1 MEVYTTENEQVEVIRRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAGTAEGVA-GAEKFA 79
Cdd:COG2976    1 MAYYLTEEEQLEAIKKWWKENGKAIIVGVVLGLAAVFGWRYWQSYQESQAEEASALYEQLLEALAAGDAAAAAaAAEKLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  80 AgDHG--NYGALTALALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWA 157
Cdd:COG2976   81 D-DYGgtAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPALKALARLRLARVLLAQKKYDEALATLDAVKPEAFA 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 518684242 158 AMVADVRGDVLASKGDNQGARDAYSKGMAAKPSQG-LQSLLRIKLNNL 204
Cdd:COG2976  160 ALYAELRGDILLAQGDKAEARAAYQKALAALPEDApLRQLLQMKLDDL 207
 
Name Accession Description Interval E-value
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 1-204 1.08e-71

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 216.26  E-value: 1.08e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   1 MEVYTTENEQVEVIRRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAGTAEGVA-GAEKFA 79
Cdd:COG2976    1 MAYYLTEEEQLEAIKKWWKENGKAIIVGVVLGLAAVFGWRYWQSYQESQAEEASALYEQLLEALAAGDAAAAAaAAEKLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  80 AgDHG--NYGALTALALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWA 157
Cdd:COG2976   81 D-DYGgtAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPALKALARLRLARVLLAQKKYDEALATLDAVKPEAFA 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 518684242 158 AMVADVRGDVLASKGDNQGARDAYSKGMAAKPSQG-LQSLLRIKLNNL 204
Cdd:COG2976  160 ALYAELRGDILLAQGDKAEARAAYQKALAALPEDApLRQLLQMKLDDL 207
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 15-206 5.46e-64

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 196.27  E-value: 5.46e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   15 RRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAGTAEGV-AGAEKFAAGDHGN-YGALTAL 92
Cdd:pfam09976   1 KAWWKENGKLIIIGVVIGLGGLFGWNGWQYYQRSQAEEASALYQQLLEAVAAGDAAKAqAAAAQLKDEYGGTgYAALAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   93 ALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWAAMVADVRGDVLASKG 172
Cdd:pfam09976  81 LLAKAAVEAGDLAAAKAQLEWVADNAKDEALKALARLRLARVLLAQGKYDEALKTLDAVTPAAFAALYAELRGDILVAQG 160

                         170       180       190
                  ....*....|....*....|....*....|....
gi 518684242  173 DNQGARDAYSKGMAAKPSQGLQSLLRIKLNNLPS 206
Cdd:pfam09976 161 KTDEARAAYQAALDALDAGAPRPLLQMKLDDLGG 194
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 88-189 2.38e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   88 ALTALALAHqfVEKNDIAKAEQQLRLALSqTKDGDLQAMinLRLARVLLQQKKPDEALKTLD-AIKLEGWAAMVADVRGD 166
Cdd:TIGR02917 127 LLALRGLAY--LGLGQLELAQKSYEQALA-IDPRSLYAK--LGLAQLALAENRFDEARALIDeVLTADPGNVDALLLKGD 201

                          90       100
                  ....*....|....*....|...
gi 518684242  167 VLASKGDNQGARDAYSKGMAAKP 189
Cdd:TIGR02917 202 LLLSLGNIELALAAYRKAIALRP 224
 
Name Accession Description Interval E-value
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 1-204 1.08e-71

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 216.26  E-value: 1.08e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   1 MEVYTTENEQVEVIRRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAGTAEGVA-GAEKFA 79
Cdd:COG2976    1 MAYYLTEEEQLEAIKKWWKENGKAIIVGVVLGLAAVFGWRYWQSYQESQAEEASALYEQLLEALAAGDAAAAAaAAEKLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  80 AgDHG--NYGALTALALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWA 157
Cdd:COG2976   81 D-DYGgtAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPALKALARLRLARVLLAQKKYDEALATLDAVKPEAFA 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 518684242 158 AMVADVRGDVLASKGDNQGARDAYSKGMAAKPSQG-LQSLLRIKLNNL 204
Cdd:COG2976  160 ALYAELRGDILLAQGDKAEARAAYQKALAALPEDApLRQLLQMKLDDL 207
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 15-206 5.46e-64

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 196.27  E-value: 5.46e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   15 RRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAGTAEGV-AGAEKFAAGDHGN-YGALTAL 92
Cdd:pfam09976   1 KAWWKENGKLIIIGVVIGLGGLFGWNGWQYYQRSQAEEASALYQQLLEAVAAGDAAKAqAAAAQLKDEYGGTgYAALAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   93 ALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWAAMVADVRGDVLASKG 172
Cdd:pfam09976  81 LLAKAAVEAGDLAAAKAQLEWVADNAKDEALKALARLRLARVLLAQGKYDEALKTLDAVTPAAFAALYAELRGDILVAQG 160

                         170       180       190
                  ....*....|....*....|....*....|....
gi 518684242  173 DNQGARDAYSKGMAAKPSQGLQSLLRIKLNNLPS 206
Cdd:pfam09976 161 KTDEARAAYQAALDALDAGAPRPLLQMKLDDLGG 194
TPR1 COG4649
TPR-like repeat domain [Function unknown];
8-151 1.47e-07

TPR-like repeat domain [Function unknown];


Pssm-ID: 443687 [Multi-domain]  Cd Length: 222  Bit Score: 49.86  E-value: 1.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   8 NEQV--EVIRRFFAENGKALAIGVVLGVGALVGWRFWQNHQESSAMAASAAYQQVTESLSAG-TAEGVAGAEKFAAGDHG 84
Cdd:COG4649   12 DEELrrDRLRALWRRYGPWIIGAAVLVVVGVAGWRGWRYWQEAQAEAAGDAYLAALELAEAGdAAEAAAALAALAADGPG 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518684242  85 NYGALTALALAHQFVEKNDIAKAEQQLRlALSQTKDGD--LQAMINLRLARVLLQQKKPDEALKTLDAI 151
Cdd:COG4649   92 GYAALARLRAAALLAQAGDTAAAVAAYD-AVAADASAPplLRDLARLRAALLLVDTGDPADVRARLEPL 159
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
100-190 1.55e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242 100 EKNDIAKAEQQLRLALSQTKDgdlQAMINLRLARVLLQQKKPDEALKTLDAIKLEGWAAMVADVRGDVLASKGDNQGARD 179
Cdd:COG3063    4 KLGDLEEAEEYYEKALELDPD---NADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 518684242 180 AYSKGMAAKPS 190
Cdd:COG3063   81 YLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 76-189 8.00e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 8.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  76 EKFAAGDHGNYGALTALALAHQfvEKNDIAKAEQQLRLALSQTKDgdlQAMINLRLARVLLQQKKPDEALKTLD-AIKLE 154
Cdd:COG2956  100 EKLLELDPDDAEALRLLAEIYE--QEGDWEKAIEVLERLLKLGPE---NAHAYCELAELYLEQGDYDEAIEALEkALKLD 174

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 518684242 155 GWAAMVADVRGDVLASKGDNQGARDAYSKGMAAKP 189
Cdd:COG2956  175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 75-151 1.45e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.43  E-value: 1.45e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 518684242  75 AEKFA--AGDHGNYGALTALALAHQFVEKNDIAKAEQQLRLALSQtkDGDLQAMINLRLARVLLQQKKPDEALKTLDAI 151
Cdd:COG3071   35 AEKLLskAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALEL--APEAELAVLLTRAELLLDQGQAEQALATLEAL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 92-191 1.50e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  92 LALAHQFVEKNDIAKAEQQLRLALSQTKDgdlQAMINLRLARVLLQQKKPDEALKTLD-AIKLEGWAAMVADVRGDVLAS 170
Cdd:COG4783   42 ALLGEILLQLGDLDEAIVLLHEALELDPD---EPEARLNLGLALLKAGDYDEALALLEkALKLDPEHPEAYLRLARAYRA 118

                         90       100
                 ....*....|....*....|.
gi 518684242 171 KGDNQGARDAYSKGMAAKPSQ 191
Cdd:COG4783  119 LGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 88-189 2.38e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 2.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   88 ALTALALAHqfVEKNDIAKAEQQLRLALSqTKDGDLQAMinLRLARVLLQQKKPDEALKTLD-AIKLEGWAAMVADVRGD 166
Cdd:TIGR02917 127 LLALRGLAY--LGLGQLELAQKSYEQALA-IDPRSLYAK--LGLAQLALAENRFDEARALIDeVLTADPGNVDALLLKGD 201

                          90       100
                  ....*....|....*....|...
gi 518684242  167 VLASKGDNQGARDAYSKGMAAKP 189
Cdd:TIGR02917 202 LLLSLGNIELALAAYRKAIALRP 224
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 97-183 1.83e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  97 QFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTL-DAIKLEGWAAMVADV---RGDVLASKG 172
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFeKLLKRYPDSPKAPDAllkLGLSYLELG 81

                         90
                 ....*....|.
gi 518684242 173 DNQGARDAYSK 183
Cdd:COG1729   82 DYDKARATLEE 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 94-203 1.85e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242   94 LAHQFVEKNDIAKAEQQLRLALSQtkdGDLQAMINLRLARVLLQQKKPDEALKTLDAIKL--EGWAAMVADVRGDVLASK 171
Cdd:TIGR02917  62 LGKIYLALGDYAAAEKELRKALSL---GYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLldDEGAAELLALRGLAYLGL 138

                          90       100       110
                  ....*....|....*....|....*....|....
gi 518684242  172 GDNQGARDAYSKGMAAKPSQG--LQSLLRIKLNN 203
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLyaKLGLAQLALAE 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-190 4.81e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 36.91  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  82 DHGNYGALTALALAHQfvEKNDIAKAEQQLRLALsQTKDGDLQAMINLrlARVLLQQKKPDEALKTLD-AIKLEGWAAMV 160
Cdd:COG0457   38 DPDDAEALYNLGLAYL--RLGRYEEALADYEQAL-ELDPDDAEALNNL--GLALQALGRYEEALEDYDkALELDPDDAEA 112

                         90       100       110
                 ....*....|....*....|....*....|
gi 518684242 161 ADVRGDVLASKGDNQGARDAYSKGMAAKPS 190
Cdd:COG0457  113 LYNLGLALLELGRYDEAIEAYERALELDPD 142
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
92-181 7.67e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 36.40  E-value: 7.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518684242  92 LALAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMinLRLARVLLQQKKPDEALKTLDAIKlegwaAMVADVR------- 164
Cdd:COG4700   93 VRLADALLELGRYDEAIELYEEALTGIFADDPHIL--LGLAQALFELGRYAEALETLEKLI-----AKNPDFKssdahll 165

                         90
                 ....*....|....*...
gi 518684242 165 -GDVLASKGDNQGARDAY 181
Cdd:COG4700  166 yARALEALGDLEAAEAEL 183
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 94-151 7.79e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 34.97  E-value: 7.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 518684242  94 LAHQFVEKNDIAKAEQQLRLALSQTKDGDLQAMINLRLARVLLQQKKPDEALKTLDAI 151
Cdd:COG1729   36 LGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEEL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH