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Conserved domains on  [gi|518904664|ref|WP_020060539|]
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flagellar type III secretion system protein FlhB [Bacillus sp. 123MFChir2]

Protein Classification

flagellar type III secretion system protein FlhB( domain architecture ID 10012530)

flagellar type III secretion system protein FlhB may be involved in the export of flagellum proteins; belongs to the EscU/YscU/HrcU family of type III secretion system proteins

Gene Symbol:  flhB
Gene Ontology:  GO:0009306|GO:0044780|GO:0016020
PubMed:  32157081|26244937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-345 2.13e-123

flagellar type III secretion system protein FlhB;


:

Pssm-ID: 235569  Cd Length: 359  Bit Score: 359.08  E-value: 2.13e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAKDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADTTE----YFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNdvlsLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  77 LMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVI 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 157 VKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 237 RKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*....
gi 518904664 317 YQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLKR 352
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-345 2.13e-123

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 359.08  E-value: 2.13e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAKDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADTTE----YFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNdvlsLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  77 LMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVI 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 157 VKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 237 RKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*....
gi 518904664 317 YQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLKR 352
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-345 1.75e-118

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 346.33  E-value: 1.75e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MA---KDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGK----KADTTE 73
Cdd:COG1377    1 MAeedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARAlaldPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  74 YFYLMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVA 153
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 154 YVIVKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLkmkkeevkkehkDNEGDPEV 233
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLrmtkqevkdehkESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 234 KGKRKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLAR 313
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|..
gi 518904664 314 SLYYQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 5-340 2.14e-116

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 340.19  E-value: 2.14e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664    5 NKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKK--ADTTEYFYLMGMLL 82
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAAdpAALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   83 LKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNLE 162
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  163 KLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFMH 242
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  243 AILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEEN 322
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 518904664  323 ETIPEDLYVAVIEVMRYL 340
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-345 3.82e-89

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 271.45  E-value: 3.82e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664    6 KTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIAN-SVAVLFDQIGKKADTTEYFYLMGMLLLK 84
Cdd:TIGR00328   2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlMSFFLSFETSDILNLGSLVGIFFQSIRE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   85 ISI---PILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNL 161
Cdd:TIGR00328  82 VLLlllPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  162 EKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFM 241
Cdd:TIGR00328 162 GELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQ 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  242 HAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEE 321
Cdd:TIGR00328 242 REAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEI 321

                         330       340
                  ....*....|....*....|....
gi 518904664  322 NETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:TIGR00328 322 GQEIPPELYKAVAEVLAYVYKLKK 345
 
Name Accession Description Interval E-value
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-345 2.13e-123

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 359.08  E-value: 2.13e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAKDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADTTE----YFY 76
Cdd:PRK05702   4 DDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNdvlsLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  77 LMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVI 156
Cdd:PRK05702  84 LLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 157 VKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGK 236
Cdd:PRK05702 164 LWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGR 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 237 RKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLY 316
Cdd:PRK05702 244 IRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLARALY 323

                        330       340
                 ....*....|....*....|....*....
gi 518904664 317 YQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:PRK05702 324 ATVEIGQEIPEELYKAVAEVLAYVYQLKR 352
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-345 1.75e-118

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 346.33  E-value: 1.75e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MA---KDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGK----KADTTE 73
Cdd:COG1377    1 MAeedDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARAlaldPADLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  74 YFYLMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVA 153
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 154 YVIVKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLkmkkeevkkehkDNEGDPEV 233
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLrmtkqevkdehkESEGDPEV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 234 KGKRKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLAR 313
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320

                        330       340       350
                 ....*....|....*....|....*....|..
gi 518904664 314 SLYYQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 5-340 2.14e-116

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 340.19  E-value: 2.14e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664    5 NKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKK--ADTTEYFYLMGMLL 82
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDRAAdpAALLALLLALLLEL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   83 LKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNLE 162
Cdd:pfam01312  81 LLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGNLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  163 KLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFMH 242
Cdd:pfam01312 161 ELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQLQR 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  243 AILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEEN 322
Cdd:pfam01312 241 EMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVEVG 320

                         330
                  ....*....|....*...
gi 518904664  323 ETIPEDLYVAVIEVMRYL 340
Cdd:pfam01312 321 QEIPEELYQAVAEVLAYV 338
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
 6-345 3.82e-89

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 271.45  E-value: 3.82e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664    6 KTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIAN-SVAVLFDQIGKKADTTEYFYLMGMLLLK 84
Cdd:TIGR00328   2 KTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVlMSFFLSFETSDILNLGSLVGIFFQSIRE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   85 ISI---PILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNL 161
Cdd:TIGR00328  82 VLLlllPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  162 EKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFM 241
Cdd:TIGR00328 162 GELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQ 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  242 HAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEE 321
Cdd:TIGR00328 242 REAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVEI 321

                         330       340
                  ....*....|....*....|....
gi 518904664  322 NETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:TIGR00328 322 GQEIPPELYKAVAEVLAYVYKLKK 345
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
 6-342 1.25e-74

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 234.02  E-value: 1.25e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   6 KTEKATPQKIKKAREEGNIAKSKDLNNlfSVLVLATVIYFFGnrLGYDIANSVAVLFDQIGKKADTTEYFYLMGML---- 81
Cdd:COG4792    5 KTEQPTPKKLRDARKKGQVAKSKDIVS--AVQLLALLGYLLL--EGDALVEHLQALILLPAQLLNLPFDEALNQLLgall 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  82 --LLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKR 159
Cdd:COG4792   81 elLLRLVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGLIFYYLLRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 160 NLEKLVS--MIGFNWSASLVEIMkqIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKR 237
Cdd:COG4792  161 YLPTLVYlpYCGLACAGPVVGAL--LKWLWGVLLGAYLVFGLADYLFQRYQFRKQLRMSKDEVKREYKDMEGDPEIKQKR 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 238 KSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYY 317
Cdd:COG4792  239 RRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEGVPVVENIPLARALYA 318

                        330       340
                 ....*....|....*....|....*
gi 518904664 318 QVEENETIPEDLYVAVIEVMRYLIQ 342
Cdd:COG4792  319 DAGLGEYIPEDLFEPVAEVLRLALL 343
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
 4-342 9.66e-73

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 229.09  E-value: 9.66e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664    4 DNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADTTeyFYLMGMLLL 83
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFFYLLSLASVFEEMLIALLILPLDFDDQPFAYA--LAQVLSGLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   84 KISIPILVLVYAFHMMNYMI----QVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKR 159
Cdd:TIGR01404  79 QLILTVLLPLLAIVLLAGVLsgllQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILKLVALALIFYLFLKN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  160 NLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKS 239
Cdd:TIGR01404 159 YLKELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  240 FMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQV 319
Cdd:TIGR01404 239 LHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIPLARQLYRTA 318

                         330       340
                  ....*....|....*....|...
gi 518904664  320 EENETIPEDLYVAVIEVMRYLIQ 342
Cdd:TIGR01404 319 RVGQYIPEELFEAVAELLRWLEQ 341
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
1-337 6.27e-69

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 226.48  E-value: 6.27e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAKDNKTEKATPQKIKKAREEGNIAKSKDLNN----LFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADTTEYFY 76
Cdd:PRK12772 260 FASDDKTEEATPKKKSDARKKGQIAKSKELALaitlLACTLVLSALGGYVANTLKETMIYFLNNYLNMNLNYNSLNSLAI 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  77 LMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVI 156
Cdd:PRK12772 340 ITLLRVAKIFLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKF 419

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 157 VKRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGK 236
Cdd:PRK12772 420 LQDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAK 499

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 237 RKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLY 316
Cdd:PRK12772 500 IKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIY 579

                        330       340
                 ....*....|....*....|.
gi 518904664 317 YQVEENETIPEDLYVAVIEVM 337
Cdd:PRK12772 580 KKVEIDQEIPQDMYQAVAEIL 600
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
6-341 7.70e-61

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 198.74  E-value: 7.70e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   6 KTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKADT--TEYFYLMGMLLL 83
Cdd:PRK12721   4 KTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINSTIQLLNKPFLYalTQILGAVLEVLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  84 KISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNLEK 163
Cdd:PRK12721  84 RFLLVLGAGLIVATVGTGIAQVGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILSLIFAYLLHYYAPS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 164 LVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFMHA 243
Cdd:PRK12721 164 FAYLPYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSE 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 244 ILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEENE 323
Cdd:PRK12721 244 IQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALFKEVECGD 323

                        330
                 ....*....|....*...
gi 518904664 324 TIPEDLYVAVIEVMRYLI 341
Cdd:PRK12721 324 YIPETLFEPVAALLRMVM 341
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 1-345 9.20e-55

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 184.08  E-value: 9.20e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAKDN---KTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVA--VLFDQiGKKADTTEYF 75
Cdd:PRK12468   1 MAEDSdqeKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAqgLHFDH-SMVSNDKQML 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  76 YLMGMLL---LKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYV 152
Cdd:PRK12468  80 RQIGMLLrqtLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 153 AYVIVKRNLEKLVSMIGFNWSASLVEIMKQIkyVFLAILIILVVVSII--DFIYQKWEHAQDLKMKKEEVKKEHKDNEGD 230
Cdd:PRK12468 160 TGLFLWHNWPDMMRLIAAPPVAALGDALHLI--IFCGLVVVLGLSPMVgfDVFYQITSHIKKLRMTKQDIRDEFKNQEGD 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 231 PEVKGKRKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRP 310
Cdd:PRK12468 238 PHVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPP 317

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 518904664 311 LARSLYYQVEENETIPEDLYVAVIEVMRYLIQTKQ 345
Cdd:PRK12468 318 LARALFRHSEVGQHIPATLYAAVAEVLAWVYQLKR 352
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 3-340 6.81e-51

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 173.06  E-value: 6.81e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   3 KDNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQ-----IGKKADTTEYFYL 77
Cdd:PRK13109   7 KESKTEEATERKVRDAIEKGDIPVSREAPVFASMLGLLIALAFFARGQAAQLTGDLAPLLDDprgfsLETGADAMLLLSR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  78 MGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIV 157
Cdd:PRK13109  87 VALAAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLSVSVVVLLLL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 158 KRNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKR 237
Cdd:PRK13109 167 RSERAKAVNAMFVDPSQLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 238 KSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYY 317
Cdd:PRK13109 247 RSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARSLYD 326

                        330       340
                 ....*....|....*....|...
gi 518904664 318 QVEENETIPEDLYVAVIEVMRYL 340
Cdd:PRK13109 327 AVQVDQVIPAEFYRPVAQILYFL 349
PRK06298 PRK06298
type III secretion system protein; Validated
 6-340 1.45e-50

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 171.96  E-value: 1.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   6 KTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKAD---TTEYFYLMGMLL 82
Cdd:PRK06298   4 KTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIFKTAPTNHDpvvTVYYLKNCLILI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  83 LKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVKRNLE 162
Cdd:PRK06298  84 LTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVLKNRVP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 163 KLVSMIGFNWSASLVeIMKQIKY-VFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRKSFM 241
Cdd:PRK06298 164 LIIETAGVPPLVTAQ-IFKEILYkAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIA 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 242 HAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYYQVEE 321
Cdd:PRK06298 243 QEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKE 322

                        330
                 ....*....|....*....
gi 518904664 322 NETIPEDLYVAVIEVMRYL 340
Cdd:PRK06298 323 LKFIPESTYEAIGEILLYI 341
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-347 8.15e-43

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 151.70  E-value: 8.15e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   1 MAkdNKTEKATPQKIKKAREEGNIAKSKDLnnLFSVLVLATVIYffgnrLGYDIA-NSVAVLFDQI---GKKADTTEYFY 76
Cdd:PRK08156   1 MA--NKTEKPTKKKLRDSAKKGQSFKSKDL--ITAVVLLGGIAY-----LVSFGSfSEFMSIYKRIladNFDINIGDYFL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  77 LMGMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPKSYFTRLFSRRSIVDILKSLFYMILLGYVAYVI 156
Cdd:PRK08156  72 AVMIIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALLYLIVFALTAYVF 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 157 VkRNLEKLVSMIGFNWSASLVEIMKQ--IKYVFLAILIILVVVsIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVK 234
Cdd:PRK08156 152 W-KNYKKEIFSQLNGNIVGLIVIWREllVKLVLTFLACALIVL-ILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIK 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 235 GKRKSFMHAILQGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARS 314
Cdd:PRK08156 230 SKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARR 309

                        330       340       350
                 ....*....|....*....|....*....|....
gi 518904664 315 LYYQVEENETIP-EDLyvavIEVMRYLIQTKQIE 347
Cdd:PRK08156 310 LYKTHRRYSFVSlEDL----DEVLRLLIWLEQVE 339
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 4-340 1.29e-36

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 139.43  E-value: 1.29e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664   4 DNKTEKATPQKIKKAREEGNIAKSKDLNNLFSVLVLATVIYFFGNRLGYDIANSVAVLFDQIGKKAD-----TTEYFYLM 78
Cdd:PRK12773 298 EGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDmssesVTELLKNA 377

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664  79 GMLLLKISIPILVLVYAFHMMNYMIQVRFLFSAKIIKPKASRINPkSYFTRLFSRRSIVDILKSLFYMILLGYVAYVIVK 158
Cdd:PRK12773 378 STDLFTLLWPLLGITLVGAIIGNVAQVGFIFTPRALSFNFSRIRP-NFKKVLPTRQTLFNLGKSLAKVGLIAWVSYIIIS 456

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 159 RNLEKLVSMIGFNWSASLVEIMKQIKYVFLAILIILVVVSIIDFIYQKWEHAQDLKMKKEEVKKEHKDNEGDPEVKGKRK 238
Cdd:PRK12773 457 KDFFPILLSGEMGLEQAVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRR 536

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518904664 239 SFMHAIL-QGAIAKKMDGATFIVNNPTHISVALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLYY 317
Cdd:PRK12773 537 QLARDMMnKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYE 616

                        330       340
                 ....*....|....*....|...
gi 518904664 318 QVEENETIPEDLYVAVIEVMRYL 340
Cdd:PRK12773 617 EVELGAEVPQQFYRAIATILSRL 639
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 268-340 8.10e-19

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 80.23  E-value: 8.10e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518904664 268 VALRYNKLVDAAPIVVAKGEDELALFMRTLAREQDIPMVENRPLARSLyYQVEENETIPEDLYVAVIEVMRYL 340
Cdd:COG2257   12 VALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELL-SQLDLGDEIPPELYQAVAEILAFI 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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