NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|518945190|ref|WP_020101065|]
View 

ABC transporter permease [Mycobacterium sp. 360MFTsu5.1]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 4-316 8.91e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 369.40  E-value: 8.91e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   4 LRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVSF 83
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  84 RSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLGW 163
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 164 LPTSGYRPLFDDPTGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILT 243
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518945190 244 ITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIRLS 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 4-316 8.91e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 369.40  E-value: 8.91e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   4 LRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVSF 83
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  84 RSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLGW 163
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 164 LPTSGYRPLFDDPTGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILT 243
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518945190 244 ITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIRLS 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 3-314 4.19e-82

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 250.79  E-value: 4.19e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVS 82
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  83 FRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLG 162
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 163 WLPTSGyrplfddPTGWlRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPIL 242
Cdd:PRK15081 161 WLPTVG-------ADSW-QHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518945190 243 TITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:PRK15081 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 3-314 2.66e-75

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 233.50  E-value: 2.66e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190    3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRY---TPEAYNALRHASGLDRPLPAQFVSYLGHAATGNL 79
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHippTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   80 GVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFST 159
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  160 TLGWLPTSGYrplfddpTGWlRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALV 239
Cdd:TIGR02789 161 YLNLLPTNGA-------GTW-QHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAIL 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 518945190  240 PILTITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:TIGR02789 233 PMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-314 3.90e-26

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 101.99  E-value: 3.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  115 ALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTtlgwlptsgyrplfddptGWLRHVILPGLTVGLVA 194
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------------SILGHGILPAIILALLG 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  195 AAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEVVFAWPGLGRLVYL 274
Cdd:pfam00528  63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 518945190  275 SVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-295 2.67e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 2.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  97 LPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSqFGVSVPDFWLGILLISLFSTTLGWlptsgyrplfddp 176
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIID-LLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 177 tGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGV 256
Cdd:cd06261   67 -GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 518945190 257 IVVEVVFA----WPGLGRLVYLSVAARDYPVIQGAVLLIAVLF 295
Cdd:cd06261  146 ALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLL 188
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 4-316 8.91e-129

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 369.40  E-value: 8.91e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   4 LRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVSF 83
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  84 RSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLGW 163
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 164 LPTSGYRPLFDDPTGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILT 243
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 518945190 244 ITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIRLS 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 3-314 4.19e-82

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 250.79  E-value: 4.19e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVS 82
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  83 FRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLG 162
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 163 WLPTSGyrplfddPTGWlRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPIL 242
Cdd:PRK15081 161 WLPTVG-------ADSW-QHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518945190 243 TITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:PRK15081 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 3-316 7.07e-77

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 237.67  E-value: 7.07e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRY---TPEAYNALRHASGLDRPLPAQFVSYLGHAATGNL 79
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNlppTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  80 GVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFST 159
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 160 TLGWLPTSGYrplfddptGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALV 239
Cdd:PRK10352 161 YLQWLPAMGY--------GGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASL 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518945190 240 PILTITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIRLS 316
Cdd:PRK10352 233 PMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRH 309
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 3-314 2.66e-75

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 233.50  E-value: 2.66e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190    3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRY---TPEAYNALRHASGLDRPLPAQFVSYLGHAATGNL 79
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHippTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   80 GVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFST 159
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  160 TLGWLPTSGYrplfddpTGWlRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALV 239
Cdd:TIGR02789 161 YLNLLPTNGA-------GTW-QHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAIL 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 518945190  240 PILTITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:TIGR02789 233 PMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
3-314 6.79e-67

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 212.75  E-value: 6.79e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTR-YTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGV 81
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERgISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  82 SFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTL 161
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 162 GWLPTSGY---RPLFDDP---TGWL-----------------RHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTA 218
Cdd:PRK10914 161 NLTPVSGRvsdMVFLDDSnplTGFMlidtaiwgedgnfidavAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 219 RSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAV 298
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320

                        330
                 ....*....|....*.
gi 518945190 299 NLVVDVLYALVDPRIR 314
Cdd:PRK10914 321 NLLVDLLYGVVNPRIR 336
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
51-314 2.78e-65

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 208.15  E-value: 2.78e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  51 NALRHASGLDrplpaQFVSYLGHAATGNLGVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLS 130
Cdd:COG4168   33 NPLSDASLFS-----GYLFYLQNLLQGDFGISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 131 DVIVRITSQFGVSVPDFWLGILLISLFSTTLGWLPTSG-YRPLFDDP--TGW--------------------LRHVILPG 187
Cdd:COG4168  108 DKLISSLSLLGFSIPVFWLALLLILFFSLNLGWLPVSGrYNLLYEIPpvTGFalidawlsdspyrlkaiqsaLQHLILPT 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 188 LTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEVVFAWPG 267
Cdd:COG4168  188 LVLAVAPTTEVIRLTRQSTEEVMNQNYIKAAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPG 267

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 518945190 268 LGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:COG4168  268 IGRWLINAIRQQDYAAISAGVIVIGTFVIIVNILSDILGALLNPLKR 314
oppB PRK09471
oligopeptide ABC transporter permease OppB;
3-314 1.45e-47

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 161.77  E-value: 1.45e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190   3 ILRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRialGTR-YTPEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGV 81
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERtLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  82 SFRSGD-PVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTT 160
Cdd:PRK09471  78 SFKYKDySVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 161 LGWLPTSGYRplfddpTGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVP 240
Cdd:PRK09471 158 LHWLPGGGWN------GGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLP 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518945190 241 ILTITGIQLATILGGVIVVEVVFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:PRK09471 232 VLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
45-311 2.40e-42

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 148.68  E-value: 2.40e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  45 YTPEAynALRHASgldrpLPAQFVSYLGHAATGNLGVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAA 124
Cdd:PRK15110  29 FTPHA--PLQGAS-----LWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 125 HEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTTLGWLPTSG-YRPLFDDPT--------GWL--------------R 181
Cdd:PRK15110 102 TRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGrFDLLYEVKPvtgfalidAWLsdspwrdemimsaiR 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 182 HVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEV 261
Cdd:PRK15110 182 HMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEM 261

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 518945190 262 VFAWPGLGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDP 311
Cdd:PRK15110 262 VFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 47-313 1.52e-39

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 142.25  E-value: 1.52e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  47 PEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHE 126
Cdd:COG4174   80 PEFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRD 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 127 GRLSDVIVRITSQFGVSVPDFWLGILLISLFS--TTLGWLPTSGYR-------PLFDDPTGWLRHVILPGLTVGLVAAAI 197
Cdd:COG4174  160 GSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTsdnwdqlSWWGKILDYLWHLTLPVTAMVIGGFAT 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 198 MTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPIltITGIQLATI---LGGVIVVEVVFAWPGLGRLVYL 274
Cdd:COG4174  240 LTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIV--IAGFPAAFIgafFTGSLLIETIFSLDGLGLLGFE 317

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 518945190 275 SVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRI 313
Cdd:COG4174  318 AVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRI 356
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 47-313 2.32e-34

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 128.71  E-value: 2.32e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  47 PEAYNALRHASGLDRPLPAQFVSYLGHAATGNLGVSFRSGDPVAQVLAERLPATVSLAVVGIVLALAIALPAGIYAAAHE 126
Cdd:PRK15133  83 PEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRN 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 127 GRLSDVIVRITSQFGVSVPDFWLGILLISLFS--TTLGWLPTSGY-------RPLFDDPTGWLRHVILPGLTVGLVAAAI 197
Cdd:PRK15133 163 GSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLvsanfdsLPWYQKITDYLWHITLPVLATVIGGFAA 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 198 MTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALvpILTITGIQLATI---LGGVIVVEVVFAWPGLGRLVYL 274
Cdd:PRK15133 243 LTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAM--LLVIAGFPATFIsmfFTGSLLIEVMFSLNGLGLLGYE 320

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 518945190 275 SVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRI 313
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 115-314 3.90e-26

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 101.99  E-value: 3.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  115 ALPAGIYAAAHEGRLSDVIVRITSQFGVSVPDFWLGILLISLFSTtlgwlptsgyrplfddptGWLRHVILPGLTVGLVA 194
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------------SILGHGILPAIILALLG 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  195 AAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEVVFAWPGLGRLVYL 274
Cdd:pfam00528  63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 518945190  275 SVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPRIR 314
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 4-104 3.25e-18

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 78.80  E-value: 3.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190    4 LRFLARRLVYSLVVLVGVLIVVFALAHLVPGDPVRIALGTRYTPEAYNALRHASGLDRPLPAQFVSYL------------ 71
Cdd:pfam19300   2 LRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLsgifagrdfgav 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 518945190   72 GHAATGNLGVSFRSGDPVAQVLAERLPATVSLA 104
Cdd:pfam19300  82 GHCPAPCLGYSFANNEPVWDTIMDRFPTTLSLA 114
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 97-295 2.67e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 2.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  97 LPATVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSqFGVSVPDFWLGILLISLFSTTLGWlptsgyrplfddp 176
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIID-LLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 177 tGWLRHVILPGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGV 256
Cdd:cd06261   67 -GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 518945190 257 IVVEVVFA----WPGLGRLVYLSVAARDYPVIQGAVLLIAVLF 295
Cdd:cd06261  146 ALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLL 188
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 100-305 1.04e-11

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 1.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 100 TVSLAVVGIVLALAIALPAGIYAAAHEGRLSDVIVRITSQFgVSVPDFWLGILLISLFSTTLGWLptsgyrplfddptgw 179
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVL-LAFPSLLLAIALVAVLGPGLLNV--------------- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 180 lrhvilpGLTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILtitgIQLATILGGVIVV 259
Cdd:COG1173  145 -------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLI----VQATLGIASAILA 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518945190 260 EVVFAWPGL---------GRLVYlsvAARDYpvIQGA-------VLLIAVLFLAVNLVVDVL 305
Cdd:COG1173  214 EAGLSFLGLgvqpptpswGTMLS---EGRNY--LLTApwlalfpGLAIVLTVLAFNLLGDGL 270
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 143-243 3.25e-06

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 47.84  E-value: 3.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 143 SVPDFWLGILLISLFSTTLGWLptSGYRPLFddptGWlrhvilpgltVGLVAaaimtrYVRSAVLEVSAMGYVRTARSKG 222
Cdd:COG4239  185 SMPELYLLIILSSIFQPSFWLL--LGILLLF----GW----------MGLVG------VVRAEFLRARNLEYVRAARALG 242

                         90       100
                 ....*....|....*....|.
gi 518945190 223 LSPRVITLRHVVRNALVPILT 243
Cdd:COG4239  243 VSDRRIMFRHILPNAMVATLT 263
nikC PRK10417
nickel transporter permease NikC; Provisional
 99-242 1.37e-04

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 42.73  E-value: 1.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  99 ATVSLAVVGIVLALAIALPAGIYAAAH--EGRLSDVIVRITSQFgVSVPDFWLGILLISLFSTTLgwlptsgyrplfddp 176
Cdd:PRK10417  66 TRVSLGSVMACLLLVLALGLVIGGSAGllGGRVDQATMRVADMF-MTFPTSILAFFMVGVLGTGL--------------- 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 518945190 177 tgwlRHVILpglTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPIL 242
Cdd:PRK10417 130 ----TNVII---AIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLL 188
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 51-243 4.51e-04

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 41.51  E-value: 4.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190  51 NALRHASGLDRPLPAQFVSYLGHAATGnlgvsfrsGDpvaqVLAERLPATVSLAVVGIVLALAIALpAGIYAAAHEGRLS 130
Cdd:PRK15021 103 TSINFATDKPFPSPPSRQNWLGTDANG--------GD----VLARILYGTRISVLFGLMLTLCSSV-MGVLAGALQGYYG 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 131 DVIVRITSQF---GVSVPDFWLGILLISLFSTTLGWLptSGYRPLFddptGWLrhvilpgltvGLVAAaimtryVRSAVL 207
Cdd:PRK15021 170 GKVDLWGQRFievWSGMPTLFLIILLSSVVQPNFWWL--LAITVLF----GWM----------SLVGV------VRAEFL 227

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 518945190 208 EVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILT 243
Cdd:PRK15021 228 RTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLT 263
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
188-269 7.52e-04

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 40.57  E-value: 7.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 188 LTVGLVAAAIMTRYVRSAVLEVSAMGYVRTARSKGLSPRVITLRHVVRNALVPILtitgIQLATILGGVIVVEVVFAWPG 267
Cdd:PRK09881 161 LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLI----VQASLDIGSAILMAATLGFIG 236


                 ..
gi 518945190 268 LG 269
Cdd:PRK09881 237 LG 238
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 188-312 9.05e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.13  E-value: 9.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518945190 188 LTVGLVAAAIMTRYVRSAVLEVSAMgYVRTARSKGLSPRVITLRHVVRNALVPILTITGIQLATILGGVIVVEVVFAWPG 267
Cdd:COG0600  130 FVIFLGAFFPILLNTAAGVRSVDPE-LLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSG 208

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 518945190 268 LGRLVYLSVAARDYPVIQGAVLLIAVLFLAVNLVVDVLYALVDPR 312
Cdd:COG0600  209 LGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLRW 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH