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Conserved domains on  [gi|518988784|ref|WP_020144659|]
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UDP-N-acetylmuramate--L-alanine ligase [Terracoccus sp. 273MFTsu3.1]

Protein Classification

UDP-N-acetylmuramate--L-alanine ligase( domain architecture ID 11433731)

UDP-N-acetylmuramate--L-alanine ligase catalyzes the addition of the first amino acid to the cytoplasmic precursor of the bacterial cell wall peptidoglycan

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MurC COG0773
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall ...
29-484 0e+00

UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family is part of the Pathway/BioSystem: Mureine biosynthesis


:

Pssm-ID: 440536 [Multi-domain]  Cd Length: 451  Bit Score: 551.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  29 DELGRVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELV 108
Cdd:COG0773    2 DKIMHIHFIGIGGIGMSGLAEILLALGYKVSGSDLAESPMTERLEALGIPVFIGHDAENIDDADLVVVSSAIPRDNPELV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 109 AARDRGVPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGELAKHGTNAHDGSDDVFVVEAD 188
Cdd:COG0773   82 AARERGIPVLSRAEMLAELMRGKRSIAVAGTHGKTTTTSMLAHILEEAGLDPTFLIGGILNNFGTNARLGDGDYFVAEAD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 189 ESDGSFVVYRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERaraAGTRVLTYGFDR 268
Cdd:COG0773  162 ESDGSFLHYSPDIAVVTNIEADHLDIYGDLEAIKEAFHEFARNVPFYGLLVLCADDPGLRELLPR---CGRPVITYGFSE 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 269 SSDVVLDHHQQDGVTSSVTLLDEGVE-RRMTLGVPGRHnalnaaaayaaAV----------HGLGQAPDQVLAGLASFTG 337
Cdd:COG0773  239 DADYRAENIRIDGGGSTFDVLRRGEElGEVELNLPGRH-----------NVlnalaaiavaLELGVDPEAIAEALASFKG 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 338 TRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKDLVGGtGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYA 417
Cdd:COG0773  308 VKRRFELKGEVGGVTVIDDYAHHPTEIAATLAAAREKYPD-RRLVAVFQPHRYSRTRDFLDEFAEALSLADEVILLDIYA 386
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518988784 418 AREDPVPGVSGRLVADAVTAARpeVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGDVTMIGPEVLR 484
Cdd:COG0773  387 AREKPIPGVSSEDLAEAIRKRG--KDVVYVPDLDELVEALAEIARPGDVVLTMGAGDIGGLGEKLLE 451
 
Name Accession Description Interval E-value
MurC COG0773
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall ...
29-484 0e+00

UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440536 [Multi-domain]  Cd Length: 451  Bit Score: 551.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  29 DELGRVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELV 108
Cdd:COG0773    2 DKIMHIHFIGIGGIGMSGLAEILLALGYKVSGSDLAESPMTERLEALGIPVFIGHDAENIDDADLVVVSSAIPRDNPELV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 109 AARDRGVPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGELAKHGTNAHDGSDDVFVVEAD 188
Cdd:COG0773   82 AARERGIPVLSRAEMLAELMRGKRSIAVAGTHGKTTTTSMLAHILEEAGLDPTFLIGGILNNFGTNARLGDGDYFVAEAD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 189 ESDGSFVVYRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERaraAGTRVLTYGFDR 268
Cdd:COG0773  162 ESDGSFLHYSPDIAVVTNIEADHLDIYGDLEAIKEAFHEFARNVPFYGLLVLCADDPGLRELLPR---CGRPVITYGFSE 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 269 SSDVVLDHHQQDGVTSSVTLLDEGVE-RRMTLGVPGRHnalnaaaayaaAV----------HGLGQAPDQVLAGLASFTG 337
Cdd:COG0773  239 DADYRAENIRIDGGGSTFDVLRRGEElGEVELNLPGRH-----------NVlnalaaiavaLELGVDPEAIAEALASFKG 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 338 TRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKDLVGGtGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYA 417
Cdd:COG0773  308 VKRRFELKGEVGGVTVIDDYAHHPTEIAATLAAAREKYPD-RRLVAVFQPHRYSRTRDFLDEFAEALSLADEVILLDIYA 386
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518988784 418 AREDPVPGVSGRLVADAVTAARpeVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGDVTMIGPEVLR 484
Cdd:COG0773  387 AREKPIPGVSSEDLAEAIRKRG--KDVVYVPDLDELVEALAEIARPGDVVLTMGAGDIGGLGEKLLE 451
murC TIGR01082
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial ...
33-483 1.30e-147

UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273433 [Multi-domain]  Cd Length: 448  Bit Score: 429.42  E-value: 1.30e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784   33 RVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELVAARD 112
Cdd:TIGR01082   1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  113 RGVPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGELAKHGTNAHDGSDDVFVVEADESDG 192
Cdd:TIGR01082  81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEAGTNARLGSGEYLVAEADESDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  193 SFVVYRPEVAIVTNVQPDHLDFY-SNFKVVQAAYDAFVGTIRPGGLLVTCADDAGavaLAERARAAGTRVLTYGFDRS-S 270
Cdd:TIGR01082 161 SFLHLQPNVAIVTNIEPDHLDTYgSSFERLKAAFEKFIHNLPFYGLAVICADDPV---LRELVPKATEQVITYGGSGEdA 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  271 DVVLDHHQQDGVTSSVTL-LDEGVERRMTLGVPGRHNALNAAAAYAAAvHGLGQAPDQVLAGLASFTGTRRRFEPKGEAG 349
Cdd:TIGR01082 238 DYRAENIQQSGAEGKFSVrGKGKLYLEFTLNLPGRHNVLNALAAIAVA-LELGIDFEAILRALANFQGVKRRFEILGEFG 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  350 GVVVVDDYAHNAGKVAAVVETAKDlVGGTGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYAAREDPVPGVSGR 429
Cdd:TIGR01082 317 GVLLIDDYAHHPTEIKATLKAARQ-GYPDKRIVVVFQPHRYSRTRDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGK 395
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 518988784  430 LVADAVTaARPEVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGDVTMIGPEVL 483
Cdd:TIGR01082 396 SLARKIT-QLGKIEPYFVPDLAELVEFLAAVLQSGDLILTMGAGDIIKLARELL 448
PRK14573 PRK14573
bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase;
35-484 4.61e-76

bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase;


Pssm-ID: 184752 [Multi-domain]  Cd Length: 809  Bit Score: 254.74  E-value: 4.61e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  35 HFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELVAARDRG 114
Cdd:PRK14573   8 HFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKSRG 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 115 VPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGeLAKHGTNAHDGSDDVFVVEADESDGSF 194
Cdd:PRK14573  88 NRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGG-LNQEGLNGYSGSSEYFVAEADESDGSL 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 195 VVYRPEVAIVTNVQPDHLdfySNFkvvQAAYDAFVGTIRPGGLLVT----CADDAGAVALaeRARAAGTrvlTYGFDRSS 270
Cdd:PRK14573 167 KHYTPEFSVITNIDNEHL---SNF---EGDRELLLASIQDFARKVQqinkCFYNGDCPRL--KGCLQGH---SYGFSSSC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 271 DVVLDHHQQDGVTSSVTLLDEGVE-RRMTLGVPGRHNALNAAAAYAAAVhGLGQAPDQVLAGLASFTGTRRRFEPKGEAG 349
Cdd:PRK14573 236 DLHILSYYQEGWRSYFSAKFLGVVyQDIELNLVGMHNVANAAAAMGIAL-TLGIDEGAIRNALKGFSGVQRRLERKNSSE 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 350 GVVVVDDYAHNAGKVAAVVETAKDLVgGTGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYAAREDPVPGVSGR 429
Cdd:PRK14573 315 TFLFLEDYAHHPSEISCTLRAVRDAV-GLRRIIAICQPHRFSRLRECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQ 393
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 518988784 430 LVADAVTAARpEVEVHYVPsWSEVAGRVAALARPGDLVLTVGAGDVTMIGpEVLR 484
Cdd:PRK14573 394 KLAEAISQSS-IVKCTYVP-FHEIQRYLEQSIRVHDVCVSLGAGNIYTLG-EALK 445
Mur_ligase_M pfam08245
Mur ligase middle domain;
136-305 3.27e-18

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 82.74  E-value: 3.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  136 VAGANGKTTTTSML---------TVALQGCGLDPSfavggelaKHGTNAH-----------DGSDDVFVVEA-----DES 190
Cdd:pfam08245   1 VTGTNGKTTTTELIaailslaggVIGTIGTYIGKS--------GNTTNNAiglpltlaemvEAGAEYAVLEVsshglGEG 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  191 DGSFVVyRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERARAAGTRVLTYGFDRSS 270
Cdd:pfam08245  73 RLSGLL-KPDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDGIAVINADDPYGAFLIAKLKKAGVRVITYGIEGEA 151
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 518988784  271 DVVLD--HHQQDGVTSSVTLLDEGVErRMTLGVPGRH 305
Cdd:pfam08245 152 DLRAAniELSSDGTSFDLFTVPGGEL-EIEIPLLGRH 187
 
Name Accession Description Interval E-value
MurC COG0773
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall ...
29-484 0e+00

UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440536 [Multi-domain]  Cd Length: 451  Bit Score: 551.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  29 DELGRVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELV 108
Cdd:COG0773    2 DKIMHIHFIGIGGIGMSGLAEILLALGYKVSGSDLAESPMTERLEALGIPVFIGHDAENIDDADLVVVSSAIPRDNPELV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 109 AARDRGVPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGELAKHGTNAHDGSDDVFVVEAD 188
Cdd:COG0773   82 AARERGIPVLSRAEMLAELMRGKRSIAVAGTHGKTTTTSMLAHILEEAGLDPTFLIGGILNNFGTNARLGDGDYFVAEAD 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 189 ESDGSFVVYRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERaraAGTRVLTYGFDR 268
Cdd:COG0773  162 ESDGSFLHYSPDIAVVTNIEADHLDIYGDLEAIKEAFHEFARNVPFYGLLVLCADDPGLRELLPR---CGRPVITYGFSE 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 269 SSDVVLDHHQQDGVTSSVTLLDEGVE-RRMTLGVPGRHnalnaaaayaaAV----------HGLGQAPDQVLAGLASFTG 337
Cdd:COG0773  239 DADYRAENIRIDGGGSTFDVLRRGEElGEVELNLPGRH-----------NVlnalaaiavaLELGVDPEAIAEALASFKG 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 338 TRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKDLVGGtGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYA 417
Cdd:COG0773  308 VKRRFELKGEVGGVTVIDDYAHHPTEIAATLAAAREKYPD-RRLVAVFQPHRYSRTRDFLDEFAEALSLADEVILLDIYA 386
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 518988784 418 AREDPVPGVSGRLVADAVTAARpeVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGDVTMIGPEVLR 484
Cdd:COG0773  387 AREKPIPGVSSEDLAEAIRKRG--KDVVYVPDLDELVEALAEIARPGDVVLTMGAGDIGGLGEKLLE 451
murC TIGR01082
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial ...
33-483 1.30e-147

UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273433 [Multi-domain]  Cd Length: 448  Bit Score: 429.42  E-value: 1.30e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784   33 RVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELVAARD 112
Cdd:TIGR01082   1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  113 RGVPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGELAKHGTNAHDGSDDVFVVEADESDG 192
Cdd:TIGR01082  81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVKEAGTNARLGSGEYLVAEADESDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  193 SFVVYRPEVAIVTNVQPDHLDFY-SNFKVVQAAYDAFVGTIRPGGLLVTCADDAGavaLAERARAAGTRVLTYGFDRS-S 270
Cdd:TIGR01082 161 SFLHLQPNVAIVTNIEPDHLDTYgSSFERLKAAFEKFIHNLPFYGLAVICADDPV---LRELVPKATEQVITYGGSGEdA 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  271 DVVLDHHQQDGVTSSVTL-LDEGVERRMTLGVPGRHNALNAAAAYAAAvHGLGQAPDQVLAGLASFTGTRRRFEPKGEAG 349
Cdd:TIGR01082 238 DYRAENIQQSGAEGKFSVrGKGKLYLEFTLNLPGRHNVLNALAAIAVA-LELGIDFEAILRALANFQGVKRRFEILGEFG 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  350 GVVVVDDYAHNAGKVAAVVETAKDlVGGTGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYAAREDPVPGVSGR 429
Cdd:TIGR01082 317 GVLLIDDYAHHPTEIKATLKAARQ-GYPDKRIVVVFQPHRYSRTRDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGK 395
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 518988784  430 LVADAVTaARPEVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGDVTMIGPEVL 483
Cdd:TIGR01082 396 SLARKIT-QLGKIEPYFVPDLAELVEFLAAVLQSGDLILTMGAGDIIKLARELL 448
PRK14573 PRK14573
bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase;
35-484 4.61e-76

bifunctional UDP-N-acetylmuramate--L-alanine ligase/D-alanine--D-alanine ligase;


Pssm-ID: 184752 [Multi-domain]  Cd Length: 809  Bit Score: 254.74  E-value: 4.61e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  35 HFLAIGGAGMSGVARIMLARGIRVTGSDAKDVPVLKALESEGAGVWVGFHEAHQERADAIVMSSSIRDDNVELVAARDRG 114
Cdd:PRK14573   8 HFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKSRG 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 115 VPVLHRAQGLAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPSFAVGGeLAKHGTNAHDGSDDVFVVEADESDGSF 194
Cdd:PRK14573  88 NRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGG-LNQEGLNGYSGSSEYFVAEADESDGSL 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 195 VVYRPEVAIVTNVQPDHLdfySNFkvvQAAYDAFVGTIRPGGLLVT----CADDAGAVALaeRARAAGTrvlTYGFDRSS 270
Cdd:PRK14573 167 KHYTPEFSVITNIDNEHL---SNF---EGDRELLLASIQDFARKVQqinkCFYNGDCPRL--KGCLQGH---SYGFSSSC 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 271 DVVLDHHQQDGVTSSVTLLDEGVE-RRMTLGVPGRHNALNAAAAYAAAVhGLGQAPDQVLAGLASFTGTRRRFEPKGEAG 349
Cdd:PRK14573 236 DLHILSYYQEGWRSYFSAKFLGVVyQDIELNLVGMHNVANAAAAMGIAL-TLGIDEGAIRNALKGFSGVQRRLERKNSSE 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 350 GVVVVDDYAHNAGKVAAVVETAKDLVgGTGRLLVVFQPHLYSRTRDFATELGAGLSPADVVVLMDVYAAREDPVPGVSGR 429
Cdd:PRK14573 315 TFLFLEDYAHHPSEISCTLRAVRDAV-GLRRIIAICQPHRFSRLRECLDSFPSAFQDADEVILTDVYSAGEEPEDSISYQ 393
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 518988784 430 LVADAVTAARpEVEVHYVPsWSEVAGRVAALARPGDLVLTVGAGDVTMIGpEVLR 484
Cdd:PRK14573 394 KLAEAISQSS-IVKCTYVP-FHEIQRYLEQSIRVHDVCVSLGAGNIYTLG-EALK 445
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
38-468 4.62e-33

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 130.20  E-value: 4.62e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  38 AIGGAGMSGV--ARIMLARGIRVTGSDAKDVPVLKA--LESEGAGVWVG-FHEAHQERADAIVMSSSIRDDNVELVAARD 112
Cdd:COG0771    8 LVLGLGKSGLaaARLLAKLGAEVTVSDDRPAPELAAaeLEAPGVEVVLGeHPEELLDGADLVVKSPGIPPDHPLLKAARA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 113 RGVPVLhraqG---LAALMHGRRPVAVAGANGKTTTTSMLTVALQGCGLDPsfAVGG-------ELAkhgtnAHDGSDDV 182
Cdd:COG0771   88 AGIPVI----GeieLAYRLSPAPIIAITGTNGKTTTTTLIGHILKAAGLRV--AVGGnigtpllDLL-----LEPEPPDV 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 183 FVVEAdeSdgSF-----VVYRPEVAIVTNVQPDHLDFYSNFkvvqAAY-DA----FVGTiRPGGLLVTCADDAGAVALAE 252
Cdd:COG0771  157 YVLEL--S--SFqlettPSLRPDVAVILNITPDHLDRHGSM----EAYaAAkariFANQ-TPDDYAVLNADDPLTRALAE 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 253 RARAAgtrvlTYGFDRSSDVVLDHHQQDGvtssvTLLDEGVERRM----TLGVPGRHNALnaaaayaaaVHGLGQAPDQV 328
Cdd:COG0771  228 EAKAR-----VVPFSLKEPLEGGAGLEDG-----KLVDRASGEELlpvdDLRLPGRHNLEnala-alaaARALGVPPEAI 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 329 LAGLASFTGTRRRFEPKGEAGGVVVVDD-YAHNAGKVAAVVETAKD----LVGGTGRLLvvfqphlysrtrDFaTELGAG 403
Cdd:COG0771  297 REALRSFKGLPHRLEFVAEINGVRFINDsKATNPDATLAALESFDGpvvlIAGGLDKGA------------DF-SPLAPA 363
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 518988784 404 LSP-ADVVVLMdvyaaredpvpGVSGRLVADAVTAArpEVEVHYVPSWSEVAGRVAALARPGDLVL 468
Cdd:COG0771  364 VAErVKAVVLI-----------GEDAEKIAAALAGA--GVPVVIVETMEEAVAAAAELARPGDVVL 416
murD TIGR01087
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation ...
35-468 1.53e-27

UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273436 [Multi-domain]  Cd Length: 433  Bit Score: 114.36  E-value: 1.53e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784   35 HFLAIGGaGMSG--VARIMLARGIRVTGSDAKDVPVLKALE-----SEGAGVWVGFHEAHQERADAIVMSSSIRDDNVEL 107
Cdd:TIGR01087   1 KILILGL-GKTGraVARFLHKKGAEVTVTDLKPNEELEPSMgqlrlNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  108 VAARDRGVPVLHRAQglAALMHGRRP-VAVAGANGKTTTTSMLTVALQGCGLDpsFAVGGELakhGTNAHDGSD----DV 182
Cdd:TIGR01087  80 QAAAKRGIPVVGDIE--LFLRLVPLPvVAITGTNGKTTTTSLLYHLLKAAGLK--AFLGGNI---GTPALEVLDqegaEL 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  183 FVVEAD----ESDGSFvvyRPEVAIVTNVQPDHLDFYSNFK-VVQAAYDAFVGTiRPGGLLVTCADDAGAVALAERARAa 257
Cdd:TIGR01087 153 YVLELSsfqlETTESL---RPEIALILNISEDHLDWHGSFEdYVAAKLKIFARQ-TEGDVAVLNADDPRFARLAQKSKA- 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  258 gtRVLTYGFDRSSDVVLDHHqqdgvTSSVTLLDEGVErrmtLGVPGRHNALNAAAAYAAAVHgLGQAPDQVLAGLASFTG 337
Cdd:TIGR01087 228 --QVIWFSVEKDAERGLCIR-----DGGLYLKPNDLE----GSLLGLHNAENILAAIALAKS-LGLNLEAILEALRSFKG 295
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  338 TRRRFEPKGEAGGVVVVDDY-AHNAGKVAAVVETAKD----LVGGTGRllvvfqphlysrtrdfatelGAGLSP-ADVV- 410
Cdd:TIGR01087 296 LPHRLEYVGQKNGVHFYNDSkATNVHATLAALSAFDNpvilIVGGDDK--------------------GADFSPlAPAAa 355
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  411 -VLMDVYAAredpvpGVSGRLVADAVTAARPEVEVHYVpswSEVAGRVA-ALARPGDLVL 468
Cdd:TIGR01087 356 gKVKAVLAI------GEDAAKIAPLLKEAGLSVYLVES---LEEAVQAArEVASPGDVVL 406
MurE COG0769
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
108-385 3.64e-21

UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440532 [Multi-domain]  Cd Length: 459  Bit Score: 95.92  E-value: 3.64e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 108 VAARDRGVPVL-----HRAQG-LAALMHGR-----RPVAVAGANGKTTTTSMLTVALQGCGLdPS-------FAVGGEL- 168
Cdd:COG0769   46 GALLAAGVPVIvvpdpRAALAlLAAAFYGHpsqklKLIGVTGTNGKTTTTYLLAQILRALGK-KTgligtvgNGIGGELi 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 169 -AKHGT-----------NAHDGSDDVFVVEAdeS---------DGsfVVYrpEVAIVTNVQPDHLDFYSNFkvvqAAY-D 226
Cdd:COG0769  125 pSSLTTpealdlqrllaEMVDAGVTHVVMEV--SshaldqgrvDG--VRF--DVAVFTNLTRDHLDYHGTM----EAYfA 194
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 227 A---FVGTIRPGGLLVTCADDAGAVALAERARAagtRVLTYGFDRSSDVVLDHHQQDGVTSSVTLLDEGVERRMTLGVPG 303
Cdd:COG0769  195 AkarLFDQLGPGGAAVINADDPYGRRLAAAAPA---RVITYGLKADADLRATDIELSADGTRFTLVTPGGEVEVRLPLIG 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 304 RHNalnaaaayaaaV----------HGLGQAPDQVLAGLASFTGTRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKD 373
Cdd:COG0769  272 RFN-----------VynalaaiaaaLALGIDLEEILAALEKLKGVPGRMERVDGGQGPTVIVDYAHTPDALENVLEALRP 340
                        330
                 ....*....|..
gi 518988784 374 LVGgtGRLLVVF 385
Cdd:COG0769  341 HTK--GRLIVVF 350
MurF COG0770
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
134-468 1.26e-20

UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440533 [Multi-domain]  Cd Length: 451  Bit Score: 94.01  E-value: 1.26e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 134 VAVAGANGKTTTTSMLTVALQGCGldPSFAVGGELakhgtNAH----------DGSDDVFVVEAdesdG----------- 192
Cdd:COG0770  103 IAITGSNGKTTTKEMLAAVLSTKG--KVLATPGNF-----NNEigvpltllrlPEDHEFAVLEM----Gmnhpgeiayla 171
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 193 SFVvyRPEVAIVTNVQPDHLDFYSNFKVVQAA----YDAfvgtIRPGGLLVTCADDAGAVALAERARAagtRVLTYGFDR 268
Cdd:COG0770  172 RIA--RPDIAVITNIGPAHLEGFGSLEGIARAkgeiFEG----LPPGGVAVLNADDPLLAALAERAKA---RVLTFGLSE 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 269 SSDVVLDHHQQDGVTSSVTLLDEGVERRMTLGVPGRHNALnAAAAYAAAVHGLGQAPDQVLAGLASFTGTRRRFEPKGEA 348
Cdd:COG0770  243 DADVRAEDIELDEDGTRFTLHTPGGELEVTLPLPGRHNVS-NALAAAAVALALGLDLEEIAAGLAAFQPVKGRLEVIEGA 321
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 349 GGVVVVDDyAHNA--GKVAAVVETAKDLvGGTGRLLVV---------FQPHLYSRTRDFATELGaglspADVVVLMdvya 417
Cdd:COG0770  322 GGVTLIDD-SYNAnpDSMKAALDVLAQL-PGGGRRIAVlgdmlelgeESEELHREVGELAAELG-----IDRLFTV---- 390
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 518988784 418 aredpvpgvsGRLVADAVTAARPEvEVHYVPSWSEVAGRVAALARPGDLVL 468
Cdd:COG0770  391 ----------GELARAIAEAAGGE-RAEHFEDKEELLAALKALLRPGDVVL 430
murD PRK14106
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
41-356 2.17e-19

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional


Pssm-ID: 184511 [Multi-domain]  Cd Length: 450  Bit Score: 90.42  E-value: 2.17e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  41 GAGMSGVA--RIMLARGIRVTGSDAKDVPVLK----ALESEGAGVWVGFH-EAHQERADAIVMSSSIRDDNVELVAARDR 113
Cdd:PRK14106  12 GAGVSGLAlaKFLKKLGAKVILTDEKEEDQLKealeELGELGIELVLGEYpEEFLEGVDLVVVSPGVPLDSPPVVQAHKK 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 114 GVPVLHRAQgLAALMHGRRPVAVAGANGKTTTTSMLtvalqgcgldpsfavgGELAKhgtNAHD---------------- 177
Cdd:PRK14106  92 GIEVIGEVE-LAYRFSKAPIVAITGTNGKTTTTTLL----------------GEIFK---NAGRktlvagnigyplidav 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 178 ---GSDDVFVVEADesdgSF-----VVYRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVA 249
Cdd:PRK14106 152 eeyGEDDIIVAEVS----SFqletiKEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRS 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 250 LAERARAagtRVLTygFDRSsdvvldHHQQDGV---TSSVTLLDEGVE----RRMTLGVPGRHnALNAAAAYAAAVHGLG 322
Cdd:PRK14106 228 LAKKAKA---RVIF--FSRK------SLLEEGVfvkNGKIVISLGGKEeeviDIDEIFIPGEH-NLENALAATAAAYLLG 295
                        330       340       350
                 ....*....|....*....|....*....|....
gi 518988784 323 QAPDQVLAGLASFTGTRRRFEPKGEAGGVVVVDD 356
Cdd:PRK14106 296 ISPDVIANTLKTFKGVEHRIEFVAEINGVKFIND 329
Mur_ligase_M pfam08245
Mur ligase middle domain;
136-305 3.27e-18

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 82.74  E-value: 3.27e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  136 VAGANGKTTTTSML---------TVALQGCGLDPSfavggelaKHGTNAH-----------DGSDDVFVVEA-----DES 190
Cdd:pfam08245   1 VTGTNGKTTTTELIaailslaggVIGTIGTYIGKS--------GNTTNNAiglpltlaemvEAGAEYAVLEVsshglGEG 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  191 DGSFVVyRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERARAAGTRVLTYGFDRSS 270
Cdd:pfam08245  73 RLSGLL-KPDIAVFTNISPDHLDFHGTMENYAKAKAELFEGLPEDGIAVINADDPYGAFLIAKLKKAGVRVITYGIEGEA 151
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 518988784  271 DVVLD--HHQQDGVTSSVTLLDEGVErRMTLGVPGRH 305
Cdd:pfam08245 152 DLRAAniELSSDGTSFDLFTVPGGEL-EIEIPLLGRH 187
Mur_ligase pfam01225
Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes ...
33-132 1.30e-16

Mur ligase family, catalytic domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460121 [Multi-domain]  Cd Length: 84  Bit Score: 74.58  E-value: 1.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784   33 RVHFLAIGGAGMSGVARIMLARGIRVTGSDAKDvpvlkALESEGAGVWVGFHEAHqeradaivmssSIRDDNVELVAARD 112
Cdd:pfam01225   1 EIHFVGIDGRGMSPGALFLALKGYRVDGSDFIE-----SLIALGAAAVVGHDAAN-----------NISPDNPELEAAKV 64
                          90       100
                  ....*....|....*....|
gi 518988784  113 RGVPVLHRAQGLAALMHGRR 132
Cdd:pfam01225  65 PGIPVIDRREALAELAAAFY 84
Mur_ligase_C pfam02875
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ...
338-426 7.96e-14

Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460731 [Multi-domain]  Cd Length: 87  Bit Score: 66.98  E-value: 7.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  338 TRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKDLVGgtGRLLVVFQPHLySRTRDFATELGAGLS-PADVVVLMDVY 416
Cdd:pfam02875   1 VPGRLEVVGENNGVLVIDDYAHNPDAMEAALRALRNLFP--GRLILVFGGMG-DRDAEFHALLGRLAAaLADVVILTGDY 77
                          90
                  ....*....|
gi 518988784  417 AAREDPVPGV 426
Cdd:pfam02875  78 PRAEDPGAII 87
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
120-384 1.14e-12

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 70.50  E-value: 1.14e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 120 RAQGLAALMHGRR---PV-AVAGANGKTTTTSMLTVALQgcgldpsfAVGGELAKHGTNAH--------------DGSDD 181
Cdd:PRK11929 588 AALGRLATAWRARfslPVvAITGSNGKTTTKEMIAAILA--------AWQGEDRVLATEGNfnneigvpltllrlRAQHR 659
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 182 VFVVEADESDGSFVVY-----RPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAerARA 256
Cdd:PRK11929 660 AAVFELGMNHPGEIAYlaaiaAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWA--KLA 737
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 257 AGTRVLTYGFDRSSDVVLDHHQQDGVTSSVTLLDEGV-----ERRMTLGVPGRHNALNAAAAYAAAvHGLGQAPDQVLAG 331
Cdd:PRK11929 738 GARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVvtpagSAEVYLPLIGEHNLRNALAAIACA-LAAGASLKQIRAG 816
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 518988784 332 LASFTGTRRRFEPKGEAGGVVVVDD-YAHNAGKVAAVVETAKDLVGGTgRLLVV 384
Cdd:PRK11929 817 LERFQPVAGRMQRRRLSCGTRIIDDtYNANPDSMRAAIDVLAELPNGP-RALVL 869
murE PRK00139
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
105-385 4.32e-12

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional


Pssm-ID: 234660 [Multi-domain]  Cd Length: 460  Bit Score: 67.85  E-value: 4.32e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 105 VELVAARDRGVPV-----LHRAQG-LAALMHGRRP-----VAVAGANGKTTTTSMLTVALQGCG---------------- 157
Cdd:PRK00139  58 AEADGEAGTGVPViivpdLRKALAlLAAAFYGHPSdklklIGVTGTNGKTTTAYLLAQILRLLGektaligtlgngigge 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 158 LDPS-----FAVggELAKHGTNAHDGSDDVFVVEAdeSDGSFVVYRPE-----VAIVTNVQPDHLDFYSNFkvvqAAY-D 226
Cdd:PRK00139 138 LIPSglttpDAL--DLQRLLAELVDAGVTYAAMEV--SSHALDQGRVDglkfdVAVFTNLSRDHLDYHGTM----EDYlA 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 227 A----FVgtiRPGGLLVTCADDAGAVALAERARAAGTRVlTYGFDRSSDVVLDHHQQDGVtssvtlldegVERRMTLGVP 302
Cdd:PRK00139 210 AkarlFS---ELGLAAVINADDEVGRRLLALPDAYAVSM-AGADLRATDVEYTDSGQTFT----------LVTEVESPLI 275
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 303 GRHNALNAAAAYAAaVHGLGQAPDQVLAGLASFTGTRRRFEPKGEAGGVVVVDDYAHNAGKVAAVVETAKDLVggTGRLL 382
Cdd:PRK00139 276 GRFNVSNLLAALAA-LLALGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHA--KGRLI 352

                 ...
gi 518988784 383 VVF 385
Cdd:PRK00139 353 CVF 355
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
115-473 6.97e-12

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 68.19  E-value: 6.97e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 115 VPVLHRAQG-LAALMHGR-----RPVAVAGANGKTTT----TSMLTVALQGCGLDPSFAVG-GELAKHGTN--------- 174
Cdd:PRK11929  90 VADLRKALGeLAARWYGRpseqlSLVAVTGTNGKTSCaqllAQLLTRLGKPCGSIGTLGARlDGRLIPGSLttpdaiilh 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 175 ------AHDGSDDVfVVEADE---SDGSFVVYRPEVAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDA 245
Cdd:PRK11929 170 rilarmRAAGADAV-AMEASShglEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDP 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 246 GAVALAeRARAAGTRVLTYGFDRSSDVVLDHHQQDGVTSSVTLLDEGVERRMTLGVPGRHNALNAAAAYAAAvHGLGQAP 325
Cdd:PRK11929 249 AAARLL-AALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAAL-KKLGLPL 326
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 326 DQVLAGLASFTGTRRRFE---PKGEAGGVVVVDDYAHNAGKVAAVVETAKDLV-GGTGRLLVVFQPHlYSRTRDFATELG 401
Cdd:PRK11929 327 AQIARALAAVSPVPGRMErvgPTAGAQGPLVVVDYAHTPDALAKALTALRPVAqARNGRLVCVFGCG-GDRDKGKRPEMG 405
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 518988784 402 A-GLSPADVVVLMDVYAAREDPvpgvsgRLVADAVTAARPEVEVHYVPSWSEVAGRVAAL-ARPGDLVLTVGAG 473
Cdd:PRK11929 406 RiAAELADRVVVTSDNPRSEAP------EAIIDQILAGIPAGARVFVISDRAEAIRQAIWmAAPGDVILIAGKG 473
murE TIGR01085
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ...
134-474 8.01e-12

UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273435 [Multi-domain]  Cd Length: 464  Bit Score: 66.96  E-value: 8.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  134 VAVAGANGKTTTTSMLTVALQGCGLDPSF------AVGGELAKHGTNAH----------------DGSDDVFVVEAdeSD 191
Cdd:TIGR01085  88 IGVTGTNGKTTTTSLIAQLLRLLGKKTGLigtigyRLGGNDLIKNPAALttpealtlqstlaemvEAGAQYAVMEV--SS 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  192 GSFVVYRPE-----VAIVTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERARAA--GTRVLTY 264
Cdd:TIGR01085 166 HALAQGRVRgvrfdAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDitVSAITQP 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  265 GFDRSSDVVLDHHQQDGVTSSVTLLDEGVERRMTLGVPGRHNALNAAAAYAAAVHGLGQAPDQVLAGLASFTGTRRRFEP 344
Cdd:TIGR01085 246 ADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHLGGIDLEDIVAALEKFRGVPGRMEL 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784  345 KGEAGGVVVVDDYAHNAGKVAAVVETAKDLVggTGRLLVVFQPhlySRTRD---------FATELgaglspADVVVLMDV 415
Cdd:TIGR01085 326 VDGGQKFLVIVDYAHTPDALEKALRTLRKHK--DGRLIVVFGC---GGDRDrgkrplmgaIAEQL------ADLVILTSD 394
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 518988784  416 YAAREDPVpgvsgRLVADAVTAARPEVEVHYVPSWSEVAGRVAALARPGDLVLTVGAGD 474
Cdd:TIGR01085 395 NPRGEDPE-----QIIADILAGISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGH 448
PRK14093 PRK14093
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; ...
132-305 2.14e-09

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional


Pssm-ID: 184501 [Multi-domain]  Cd Length: 479  Bit Score: 59.40  E-value: 2.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 132 RPVAVAGANGKTTTTSMLTVALQGCG--------LDPSFAVGGELAKHGTNAHDGSDDVFVVEADESDGSFVVYRPEVAI 203
Cdd:PRK14093 109 KVIAVTGSVGKTSTKEALRGVLGAQGethasvasFNNHWGVPLSLARCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAI 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 204 VTNVQPDHLDFYSNFKVVQAAYDAFVGTIRPGGLLVTCADDAGAVALAERARAAG-TRVLTYGFD-----RSSDVVLdhh 277
Cdd:PRK14093 189 ITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGiARIVSFGADekadaRLLDVAL--- 265
                        170       180
                 ....*....|....*....|....*...
gi 518988784 278 QQDGVTSSVTLLDEGVERRmtLGVPGRH 305
Cdd:PRK14093 266 HADCSAVHADILGHDVTYK--LGMPGRH 291
PRK14016 PRK14016
cyanophycin synthetase; Provisional
130-281 2.26e-07

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 53.62  E-value: 2.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 130 GRRP-VAVAGANGKTTTTSMLTVALQGCGLDPSFA------VGGELAKHGTNAH---------DGSDDVFVVEA------ 187
Cdd:PRK14016 478 GRIPiVAVTGTNGKTTTTRLIAHILKLSGKRVGMTttdgvyIDGRLIDKGDCTGpksarrvlmNPDVEAAVLETarggil 557
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 188 ------DESDgsfvvyrpeVAIVTNVQPDHL-DFY-------SNFKVVQaaydafVGTIRPGGLLVTCADDAGAVALAER 253
Cdd:PRK14016 558 reglayDRCD---------VGVVTNIGEDHLgLGGintledlAKVKRVV------VEAVKPDGYAVLNADDPMVAAMAER 622
                        170       180
                 ....*....|....*....|....*...
gi 518988784 254 ARAagtRVLTYGFDRSSDVVLDHHQQDG 281
Cdd:PRK14016 623 CKG---KVIFFSMDPDNPVIAEHRAQGG 647
FolC COG0285
Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; ...
196-487 2.17e-04

Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; Folylpolyglutamate synthase/Dihydropteroate synthase is part of the Pathway/BioSystem: Folate biosynthesis


Pssm-ID: 440054 [Multi-domain]  Cd Length: 423  Bit Score: 43.56  E-value: 2.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 196 VYRPEVAIVTNVQPDHLDFYSNfKVVQAAYD-AfvGTIRPGGLLVTCADDAGAVA-LAERARAAGTRVLTYGFDRSsdvV 273
Cdd:COG0285  152 VIDPLVSVITSIGLDHTDFLGD-TLEEIAREkA--GIIKPGVPVVTGDQQPEALEvIEERAAELGAPLYRAGRDFS---V 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 274 LDHHQQDGVTSSVTLLDEGVERRMtlgvPGRHNAL----NAAAAYAAAVHGLGQAPDQVLAGLASFT--GtrrRFEPKGE 347
Cdd:COG0285  226 EEREGAVFSYQGPGGEYEDLPLPL----LGAHQAEnaalALAALEALRELGLPISEEAIREGLANARwpG---RLEVLSR 298
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 518988784 348 AGGVVVvdDYAHNAGKVAAVVETAKDLVGGtGRLLVVFqphlyS--RTRDFATELGAGLSPADVVVLMDVYAARedpvpG 425
Cdd:COG0285  299 GPLVIL--DGAHNPAGARALAETLKELFPF-RKLHLVF-----GmlADKDIEGMLAALAPLADEVIVTTPPSPR-----A 365
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 518988784 426 VSGRLVADAVTAARPEVEVHyvPSWSEVAGRVAALARPGDLVLtVgAGDVTMIGpEVLRILG 487
Cdd:COG0285  366 LDAEELAEAARELGLRVEVA--PDVEEALEAALELADPDDLIL-V-TGSLYLVG-EVRALLG 422
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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