|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-804 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1509.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 1 MAMKKILFATLLATSVSANSAENFVVQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 81 DETLVVQVKERPTIASVSFSGNKAIKEEQLQQNLDASGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 161 NRADLKFVFTEGVSAKIQQINFIGNEVFSDQELLSRFNLKVDVAWWNFLSDDKYQKQVLAGDIEALRTFYLDRGYLKFQV 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 241 DSTQVAISPDKKGVYITMNLNEGKPYTVKDVQFRGELIGKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 321 QVRTIPEFDDATQQVSLVVHVETGKRMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDV 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 401 QTVRVPGTDDQVDLVYTVKEANSGSVNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNL 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 481 DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGVGYTHNKIGNLTPYLQVEQFLKAQESNID--S 558
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSsdS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 559 DGSLLTNDFDMNIAWTRNNLNKGYFPTAGNYQRASGKITVPGSDAKYFKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGY 638
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 639 GQTDgkdnlYPFYENFYAGGFTTLRGFGSNTAGPKAVYRDY-----SGSNNGTDTATDDSVGGNAIALASVELIVPTPFA 713
Cdd:PRK11067 641 GGKE-----MPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 714 SDEARSQVRTSIFYDMASVWDTEFDYRSSGAdygDKYYYDYSDPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDE 793
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTR---AAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKA 792
|
810
....*....|.
gi 520912022 794 EFFTFTIGRTF 804
Cdd:PRK11067 793 EQFQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-804 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 946.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 24 FVVQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRDDETLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 104 AIKEEQLQQNLdaSGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFI 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 184 GNEVFSDQELLSRFNLKVDVAWWNFLSDDKYQKQVLAGDIEALRTFYLDRGYLKFQVDSTQVAISPDKKGVYITMNLNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 264 KPYTVKDVQFRGELIGKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYPQVRTIPEFDDATQQVSLVVHVET 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 344 GKRMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDVQTVRVpGTDDQVDLVYTVKEANS 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 424 GSVNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEAGIVD 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 504 YTNESYGTSLTWGFPFDELNRFEFGVGYTHNKI-GNLTPYLQVEQFLKAQESNidsdgsllTNDFDMNIAWTRNNLNKGY 582
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIkDDSDSDSSASYFIKEQGGK--------FIDSSLSYGWSYDTLDSGY 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 583 FPTAGNYQRASGKITVPGSDAKYFKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGYGQTDgkdnlYPFYENFYAGGFTTL 662
Cdd:TIGR03303 550 FPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIGSV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 663 RGFGSNTAGPKAVYrdysgsnngtdtATDDSVGGNAIALASVELIVPTPFASDEArsQVRTSIFYDMASVWDTEFDYRSS 742
Cdd:TIGR03303 625 RGFESNGIGPRDIN------------DSGDSIGGNAMATANVELIFPLPFLPEDN--GLRGSVFFDAGNVWGTDQKKEGD 690
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520912022 743 gadygdkyyydYSDPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 804
Cdd:TIGR03303 691 -----------YSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-804 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 712.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 26 VQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRDDETLVVQVKERPTIASVSFSGNKAI 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 106 KEEQLQQNLdasGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKavVTPlPRNRADLKFVFTEGVSAKIQQINFIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 186 EVFSDQELLSRFNLKVDVAWWnflSDDKYQKQVLAGDIEALRTFYLDRGYLKFQVDSTQVAISPDKKGVYITMNLNEGKP 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 266 YTVKDVQFRGELIgKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYPQVRTIPEFDDATQQVSLVVHVETGK 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 346 RMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDVQTVRVPGTDDQVDLVYTVKEANSGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 426 VNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEagIVDYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASD--YSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 506 NESYGTSLTWGFPFDELNRFEFGVGYTHNKIGNLTPYLqveQFLKAQESNidsdgsllTNDFDMNIAWTRNNLNKGYFPT 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSP---DYLPDQNGS--------SNTSSLGLGLTYDTRDNPLFPT 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 586 AGNYQRASGKITVP--GSDAKYFKLQYDVRQYVPLTKKHefTLLLRGRLGYGNGYGQTdgkdnlYPFYENFYAGGFTTLR 663
Cdd:COG4775 538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKKL--VLALRAEAGYLGGYGKD------LPFFERFYLGGFGSLR 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 664 GFGSNTAGPKavyrdysgsnngtdtatddsVGGNAIALASVELIVPTPFASDearSQVRTSIFYDMASVWDTEFDYRssg 743
Cdd:COG4775 610 GYEENSLGPR--------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSGDDFD--- 663
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520912022 744 adygdkyyydysdPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 804
Cdd:COG4775 664 -------------LSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-800 |
2.98e-100 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 313.14 E-value: 2.98e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 448 NFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEF 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 528 GVGYTHNKIGNLTPYLQVEQFLKaqesniDSDGSLLTNDFDMNIAWTRNNLNKGYFPTAGNYQRASGKITV--PGSDAKY 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYP------SASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 606 FKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGYGQTDgkdnlYPFYENFYAGGFTTLRGFGSNTAGPKAvyrdysgsnng 685
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAGGSNSVRGFEYGGIGPRD----------- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 686 tdtATDDSVGGNAIALASVELIVPTPFASDearSQVRTSIFYDMASVWDTEFDYRSSGADYGDKYyydysdptNYRSSYG 765
Cdd:pfam01103 219 ---EDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSRGARSKA--------GIRASVG 284
|
330 340 350
....*....|....*....|....*....|....*
gi 520912022 766 VALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTI 800
Cdd:pfam01103 285 VGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-804 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1509.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 1 MAMKKILFATLLATSVSANSAENFVVQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 81 DETLVVQVKERPTIASVSFSGNKAIKEEQLQQNLDASGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 161 NRADLKFVFTEGVSAKIQQINFIGNEVFSDQELLSRFNLKVDVAWWNFLSDDKYQKQVLAGDIEALRTFYLDRGYLKFQV 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 241 DSTQVAISPDKKGVYITMNLNEGKPYTVKDVQFRGELIGKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 321 QVRTIPEFDDATQQVSLVVHVETGKRMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDV 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 401 QTVRVPGTDDQVDLVYTVKEANSGSVNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNL 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 481 DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGVGYTHNKIGNLTPYLQVEQFLKAQESNID--S 558
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSsdS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 559 DGSLLTNDFDMNIAWTRNNLNKGYFPTAGNYQRASGKITVPGSDAKYFKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGY 638
Cdd:PRK11067 561 DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 639 GQTDgkdnlYPFYENFYAGGFTTLRGFGSNTAGPKAVYRDY-----SGSNNGTDTATDDSVGGNAIALASVELIVPTPFA 713
Cdd:PRK11067 641 GGKE-----MPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 714 SDEARSQVRTSIFYDMASVWDTEFDYRSSGAdygDKYYYDYSDPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDE 793
Cdd:PRK11067 716 SDKYANSVRTSFFWDMGTVWDTNWDNTAYTR---AAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKA 792
|
810
....*....|.
gi 520912022 794 EFFTFTIGRTF 804
Cdd:PRK11067 793 EQFQFNIGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-804 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 946.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 24 FVVQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRDDETLVVQVKERPTIASVSFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 104 AIKEEQLQQNLdaSGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFI 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 184 GNEVFSDQELLSRFNLKVDVAWWNFLSDDKYQKQVLAGDIEALRTFYLDRGYLKFQVDSTQVAISPDKKGVYITMNLNEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 264 KPYTVKDVQFRGELIGKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYPQVRTIPEFDDATQQVSLVVHVET 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 344 GKRMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDVQTVRVpGTDDQVDLVYTVKEANS 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 424 GSVNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEAGIVD 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 504 YTNESYGTSLTWGFPFDELNRFEFGVGYTHNKI-GNLTPYLQVEQFLKAQESNidsdgsllTNDFDMNIAWTRNNLNKGY 582
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIkDDSDSDSSASYFIKEQGGK--------FIDSSLSYGWSYDTLDSGY 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 583 FPTAGNYQRASGKITVPGSDAKYFKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGYGQTDgkdnlYPFYENFYAGGFTTL 662
Cdd:TIGR03303 550 FPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKD-----LPFYERFYAGGIGSV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 663 RGFGSNTAGPKAVYrdysgsnngtdtATDDSVGGNAIALASVELIVPTPFASDEArsQVRTSIFYDMASVWDTEFDYRSS 742
Cdd:TIGR03303 625 RGFESNGIGPRDIN------------DSGDSIGGNAMATANVELIFPLPFLPEDN--GLRGSVFFDAGNVWGTDQKKEGD 690
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520912022 743 gadygdkyyydYSDPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 804
Cdd:TIGR03303 691 -----------YSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-804 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 712.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 26 VQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRDDETLVVQVKERPTIASVSFSGNKAI 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 106 KEEQLQQNLdasGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKavVTPlPRNRADLKFVFTEGVSAKIQQINFIGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 186 EVFSDQELLSRFNLKVDVAWWnflSDDKYQKQVLAGDIEALRTFYLDRGYLKFQVDSTQVAISPDKKGVYITMNLNEGKP 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 266 YTVKDVQFRGELIgKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYPQVRTIPEFDDATQQVSLVVHVETGK 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 346 RMYVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGYFETVDVQTVRVPGTDDQVDLVYTVKEANSGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 426 VNFGVGYGTESGVSFTVGLTQDNFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEagIVDYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASD--YSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 506 NESYGTSLTWGFPFDELNRFEFGVGYTHNKIGNLTPYLqveQFLKAQESNidsdgsllTNDFDMNIAWTRNNLNKGYFPT 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDSSP---DYLPDQNGS--------SNTSSLGLGLTYDTRDNPLFPT 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 586 AGNYQRASGKITVP--GSDAKYFKLQYDVRQYVPLTKKHefTLLLRGRLGYGNGYGQTdgkdnlYPFYENFYAGGFTTLR 663
Cdd:COG4775 538 RGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGKKL--VLALRAEAGYLGGYGKD------LPFFERFYLGGFGSLR 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 664 GFGSNTAGPKavyrdysgsnngtdtatddsVGGNAIALASVELIVPTPFASDearSQVRTSIFYDMASVWDTEFDYRssg 743
Cdd:COG4775 610 GYEENSLGPR--------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSGDDFD--- 663
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520912022 744 adygdkyyydysdPTNYRSSYGVALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 804
Cdd:COG4775 664 -------------LSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-800 |
2.98e-100 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 313.14 E-value: 2.98e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 448 NFLGSGNRVGINATTNDYQKNITLEYRDPYWNLDGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEF 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 528 GVGYTHNKIGNLTPYLQVEQFLKaqesniDSDGSLLTNDFDMNIAWTRNNLNKGYFPTAGNYQRASGKITV--PGSDAKY 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYYP------SASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGDVSY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 606 FKLQYDVRQYVPLTKKHEFTLLLRGRLGYGNGYGQTDgkdnlYPFYENFYAGGFTTLRGFGSNTAGPKAvyrdysgsnng 685
Cdd:pfam01103 155 YKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKD-----LPFYERFYAGGSNSVRGFEYGGIGPRD----------- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 686 tdtATDDSVGGNAIALASVELIVPTPFASDearSQVRTSIFYDMASVWDTEFDYRSSGADYGDKYyydysdptNYRSSYG 765
Cdd:pfam01103 219 ---EDGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSRGARSKA--------GIRASVG 284
|
330 340 350
....*....|....*....|....*....|....*
gi 520912022 766 VALQWMSPMGPLVFSLAKPIKKYEGDDEEFFTFTI 800
Cdd:pfam01103 285 VGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
223-804 |
3.14e-58 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 208.60 E-value: 3.14e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 223 IEALRTFyldrGYLKFQVDSTqvaISPDKKGVYITMNLNEGKPYTVKDVQFRGELIGKEDEFKSLI----PFEMGETYRG 298
Cdd:COG0729 65 RAALRAE----GYYSPTVTIR---LDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQDPARRKLlaawPLKPGDPLRH 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 299 SSVTQLEESVKRVLGEAGYAYPQV-RTIPEFDDATQQVSLVVHVETGKRMYVRDIRFVGNNATRDEVLRREMRQMEGSWL 377
Cdd:COG0729 138 GAYEAAKSALLDALRERGYPDARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPY 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 378 NSKSIDTGKARLNRLGYFETVDVQTVRVPGTDDQVDLVYTVKEANSGSVNFGVGYGTESGVSFTVGLTQDNFLGSGNRVG 457
Cdd:COG0729 218 SPDKLLELQQRLQSTGYFSSVRVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLR 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 458 INATTNDYQKNITLEYRDPYW--NLDGVSLGGKVFYNQFEaseagivDYTNESYGTSLTWGFPFDELNRFEFGVGYTHnk 535
Cdd:COG0729 298 LELELSQPEQSLSADYRIPPLfpLGQYLSLGAGLEREDTD-------DYDSRSLTLGAGRTRRLSDGWTRSLGLRLLY-- 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 536 ignltpylqvEQFlkaQESNIDSDGSLLTndfdMNIAWTRNNLNKGYFPTAGNYQRASGKITVP--GSDAKYFKLQYDVR 613
Cdd:COG0729 369 ----------ERF---TDGDDDRTYTLLS----PGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGS 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 614 QYVPLTKKHefTLLLRGRLGYgngygqTDGKD-NLYPFYENFYAGGFTTLRGFGSNTAGPKavyrdysgsnngtdTATDD 692
Cdd:COG0729 432 WYRPLGERH--RLAGRAELGA------ILGADfDDVPPSLRFFAGGDGSVRGYGYQSLGPR--------------DGDGD 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 693 SVGGNAIALASVELIVPTpfasdeaRSQVRTSIFYDMASVWDTEFDYrssgadygdkyyydysdptNYRSSYGVALQWMS 772
Cdd:COG0729 490 VIGGRSLAVGSLEYRYRV-------TENWGLAVFVDAGNAFNDFPFS-------------------DLKVGAGLGLRWYS 543
|
570 580 590
....*....|....*....|....*....|..
gi 520912022 773 PMGPLVFSLAKPIKKYEGDDEEFFtFTIGRTF 804
Cdd:COG0729 544 PVGPIRLDLAYPLNDRDDSSFRLY-ISLGQAF 574
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
261-804 |
1.27e-24 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 108.89 E-value: 1.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 261 NEGKPYTVKDVQFRGELIGKEDEFKSLIpfemgETYRGSSVT--QLEESVKRV---LGEAGYAYPQVrTIPEfddatQQV 335
Cdd:COG2831 59 AEGPCFTIKRIRVEGNTVLPEEELQALL-----APYLGRCLTlaDLNALADAItnlYRDRGYITSRA-YLPP-----QDL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 336 S---LVVHVETGKrmyVRDIRFVGNNATRDEVLRREMRQMEGSWLNSKSIDTGKARLNRLGyfeTVDVQTVRVPGT-DDQ 411
Cdd:COG2831 128 SdgvLRIQVVEGR---VGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLP---GVQVTAELRPGTePGT 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 412 VDLVYTVKEANSGSVNFGV-GYGTES--GVSFTVGLTQDNFLGSGNRVGINATT---NDYQKNITLEYRDP--YWNLdGV 483
Cdd:COG2831 202 SDLVVTVEEAKPFRGSLGLdNSGSPStgRYRLGASLSLDNLLGLGDQLSLSYSRsldGDGSRSYSLSYSVPlgYWGL-TL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 484 SLGGkVFYNQFEASEAGIVDYTNESYGTSLTWGFPF--DELNRFEFGVGYTHNKIGNltpYLQvEQFLKAQESNIDS--- 558
Cdd:COG2831 281 GLSY-SRYRSRVGGPFGTLDISGKSQTYGLRLSYPLirSRDQKLSLSLGLDYKDSRN---YLL-GTEIEVQRRRLSVlrl 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 559 ----DGSLLTNDFDMNIAWTRNnlnkgyFPTAGNYQRASGKitvPGSDAKYFKLQYDVRQYVPLTKKheFTLLLRgrlgy 634
Cdd:COG2831 356 glsyTRRLGGGVLSLSLSFSQG------LDWLGATPAPDAS---RGPDGRFTKLRLSASRVQPLPQD--FSLLLR----- 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 635 gnGYGQTdGKDNLYPfYENFYAGGFTTLRGFGSNTAgpkavyrdySGsNNGtdtatddsvggnaiALASVELIvpTPFAS 714
Cdd:COG2831 420 --LDGQY-SSDPLLS-SEQFSLGGRYSVRGYDEGEL---------SG-DNG--------------WYLSNELR--WPLPR 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 715 DEARSQVRTSIFYDMASVWdtefdyrssgadygDKYYYDYSDPTNYRSSYGVALQWmSPMGPLVFSL--AKPIKKYEGD- 791
Cdd:COG2831 470 LSLLGGLQLYAFLDAGRVW--------------NNSALPGQLNGRTLAGAGLGLRL-SLGKNLSLDLdyARPLGDPDGDt 534
|
570
....*....|...
gi 520912022 792 DEEFFTFTIGRTF 804
Cdd:COG2831 535 DNRRLYFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
176-263 |
7.55e-15 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 70.06 E-value: 7.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 176 KIQQINFIGNEVFSDQELLSRFNLKVDvawwnflsdDKYQKQVLAGDIEALRTFYLDRGYLKFQVdSTQVAISPDKKGVY 255
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEG---------DVYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVD 70
|
....*...
gi 520912022 256 ITMNLNEG 263
Cdd:pfam07244 71 LTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
348-420 |
2.32e-14 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 68.52 E-value: 2.32e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 520912022 348 YVRDIRFVGNNATRDEVLRREMRQMEGSWLNS----KSIDTGKARLNRLGYFETVDVQTVRVPGTDDQVDLVYTVKE 420
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNRekleEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDE 77
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-172 |
6.71e-12 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 61.59 E-value: 6.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 93 TIASVSFSGNKAIKEEQLQQNLdasGIRVGEALDRTKLSNIEKGLEDFYYSVGKYNATVKAVVT-PLPRNRADLKFVFTE 171
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 520912022 172 G 172
Cdd:pfam07244 78 G 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
267-344 |
1.40e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.82 E-value: 1.40e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 520912022 267 TVKDVQFRGELIGKEDEFKSLIPFEMGETYRGSSVTQLEESVKRVLGEAGYAYPQVRTIPEFDDATQQVSLVVHVETG 344
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| 3a0901s03IAP75 |
TIGR00992 |
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved ... |
300-697 |
2.79e-08 |
|
chloroplast envelope protein translocase, IAP75 family; Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130065 [Multi-domain] Cd Length: 718 Bit Score: 57.28 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 300 SVTQLEESVKRV---LGEAGYAYPQVRTIPEFDdaTQQVSLVVHVETGKRMYVRDIRFVGN---NATRDEVLRREMRQ-- 371
Cdd:TIGR00992 221 SARLLQEIRDRVqewYHNEGYACAQVVNFGNLN--TDEVVCEVVEGDITNLQIQFFDKLGNvveGNTRDPVVTRELPKql 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 372 MEGSWLNSKSIDTGKARLNRLGYFETVDVQTvrVPGTDDQVDLVYTVK--EANSGSVNFGVGYG-----------TESGV 438
Cdd:TIGR00992 299 KPGDVFNIEAGKTALQNINSLGLFSNIEVNP--RPDEMNEGEIIVEIKlkELEQKSAEVSTEWSivpgrggrptlASSQP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 439 SFTVGLTQDNFLGSGNRVGINATTNDY---QKNIT--LEYRDPYwnLDGVSLGGKVFY--NQFEASEAGIVDYTNESYGt 511
Cdd:TIGR00992 377 GGTITFEHRNLQGLNRSLGGSVTTSNFlnpQDDLLfkVEYTHPY--LDGVDNPRNRTYtaSCFNSRKLSPVFTGGPGVN- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 512 sltwGFPFDELNRFEFGVGYTHN--KIGNLTPYLQVEQFLKAQESN--------------IDSDGSLLTND-------FD 568
Cdd:TIGR00992 454 ----EVPSIWVDRAGVKANITENfaRQSKFTYGLVMEEIFTRDESRhinangqrslpsgpISADGPPTTLSgtgvdrmAF 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 569 MNIAWTRNNLNKGYFPTAGNYQRASGKITVP-GSDAKYF-KLQYDVRQYVPLT-------KKHEFTLLLRGRlgYGNGYG 639
Cdd:TIGR00992 530 LQANITRDNTNFVNGPTVGSRVRFQVDQGLGvGSGFPFFnRHQLTYTKFIQLNwvelgagKSPPPVLVLHGH--YGGCVG 607
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520912022 640 QtdgkdnlYPFYENFYAGGFTTLRGF-------GSNTAGPKAVYR-------DYSGSNNGTDTATDDSVGGN 697
Cdd:TIGR00992 608 D-------LPSYDAFILGGPYSVRGYnmgelgaARNIFEATAEIRipikathVYAFVEHGSDLGSSKDVKGN 672
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
6-127 |
6.62e-04 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 42.32 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912022 6 ILFATLLATSVSANSAENFVVQDIQIQGLQRVALGAALLKMPVRVGDTVDSQDVAEIIKALYASGNFEDVKVLRD--DeT 83
Cdd:COG1589 22 LLLLLLALLVWLLLFSPLFPVREVEVEGNSHVSAEEIRAALGILLGGNLFTLDLDAIRERLEALPWVKSASVRRRwpD-T 100
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 520912022 84 LVVQVKERPTIASVSFSGNKAIkeeqlqqnLDASGIRVGEALDR 127
Cdd:COG1589 101 LVIEVTEREPVARWNTGGGYYL--------VDADGVVFEAVSAE 136
|
|
| |
