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Conserved domains on  [gi|520912036|ref|WP_020331682|]
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MULTISPECIES: cytochrome c [Vibrio]

Protein Classification

c-type cytochrome( domain architecture ID 10006741)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Helicobacter pylori cytochrome c-553 that binds 1 heme and functions as the natural electron acceptor for a formate dehydrogenase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
30-103 2.94e-24

Cytochrome c553 [Energy production and conversion];


:

Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 87.86  E-value: 2.94e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520912036  30 KSAVCAACHGADGIAVI-PGYPNLKGQNEQYIVTAIKAYKNKERNGglaPVMQAQASMLSDDDIANLAAYFASLK 103
Cdd:COG2863   21 YAAACAACHGADGEGNPgGGAPRLAGQHAEYLVAQLKAFRSGARKN---GVMPAIAKGLSDEDIKALAAYIASLK 92
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
30-103 2.94e-24

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 87.86  E-value: 2.94e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520912036  30 KSAVCAACHGADGIAVI-PGYPNLKGQNEQYIVTAIKAYKNKERNGglaPVMQAQASMLSDDDIANLAAYFASLK 103
Cdd:COG2863   21 YAAACAACHGADGEGNPgGGAPRLAGQHAEYLVAQLKAFRSGARKN---GVMPAIAKGLSDEDIKALAAYIASLK 92
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 32-103 9.24e-11

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 53.31  E-value: 9.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912036   32 AVCAACHGADGIAVIPGYPNLKGQNEQYIVTAIKAYKNKERNGGLAPV----MQAQASM-----LSDDDIANLAAYFASL 102
Cdd:pfam00034   9 ANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdragGPPGTGMpafdgLTDEEIADLVAYLLSL 88


                  .
gi 520912036  103 K 103
Cdd:pfam00034  89 S 89
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 34-102 4.29e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 37.57  E-value: 4.29e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520912036   34 CAACHGADGIAViPGYPNLK------GQNEQYIVTAIK-AYKNKERNGGLAPVMQAQASMLSDDDIANLAAYFASL 102
Cdd:TIGR00782 118 CAQCHGSGAGGA-KGFPNLLdndwlwGGTLEGIHTTIKhGIRDPDDGDTYVGEMPAFGPLLEEADIKDVASYVMSL 192
PRK13697 PRK13697
cytochrome c6; Provisional
 31-98 1.91e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 34.76  E-value: 1.91e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 520912036  31 SAVCAACHgADGIAVIPGYPNLKGQN-EQYIVTAIKAYKNKERNGGLApvMQAQASMLSDDDIANLAAY 98
Cdd:PRK13697  36 SANCASCH-AGGKNLVNAGKTLKKADlEKYGMYSLEAITAQVTNGKNA--MPAFKDRLSPDQIEDVAAY 101
 
Name Accession Description Interval E-value
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
30-103 2.94e-24

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 87.86  E-value: 2.94e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520912036  30 KSAVCAACHGADGIAVI-PGYPNLKGQNEQYIVTAIKAYKNKERNGglaPVMQAQASMLSDDDIANLAAYFASLK 103
Cdd:COG2863   21 YAAACAACHGADGEGNPgGGAPRLAGQHAEYLVAQLKAFRSGARKN---GVMPAIAKGLSDEDIKALAAYIASLK 92
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
34-103 6.84e-12

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 58.42  E-value: 6.84e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520912036  34 CAACHGADGIAVIPGYPNLK-----GQNEQYIVTAIkayknkeRNGGLAPVMQAQASMLSDDDIANLAAYFASLK 103
Cdd:COG2010  100 CAACHGADGKGGLGAAPNLTddalyGGDPEALVETI-------LNGRPGGAMPAFGGQLSDEEIAALAAYLRSLS 167
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 32-103 9.24e-11

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 53.31  E-value: 9.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912036   32 AVCAACHGADGIAVIPGYPNLKGQNEQYIVTAIKAYKNKERNGGLAPV----MQAQASM-----LSDDDIANLAAYFASL 102
Cdd:pfam00034   9 ANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdragGPPGTGMpafdgLTDEEIADLVAYLLSL 88


                  .
gi 520912036  103 K 103
Cdd:pfam00034  89 S 89
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 34-102 7.75e-06

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 42.53  E-value: 7.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912036  34 CAACHGADG-----IAVIPGYPNLKGQNE-------QYIVTAIKAYKNkeRNgglapvMQA-QASMLSDDDIANLAAYFA 100
Cdd:COG3258  128 CASCHGADGegqgrADGQYGFPPLWGGDSyndgagmARLGTLADFIKG--RN------MPLgKPGSLSDDEAWDVAAYVR 199


                 ..
gi 520912036 101 SL 102
Cdd:COG3258  200 SL 201
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
32-98 1.37e-05

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 39.70  E-value: 1.37e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 520912036   32 AVCAACHGADGIAvipgyPNLKGQ--NEQYIVTAIkayknkeRNGGLApvMQAQASMLSDDDIANLAAY 98
Cdd:pfam13442  12 ANCASCHGTGGAG-----PSLAGRalPPEALVDII-------RNGKGA--MPAFGGDLSDEELEALAAY 66
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 34-102 4.29e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 37.57  E-value: 4.29e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520912036   34 CAACHGADGIAViPGYPNLK------GQNEQYIVTAIK-AYKNKERNGGLAPVMQAQASMLSDDDIANLAAYFASL 102
Cdd:TIGR00782 118 CAQCHGSGAGGA-KGFPNLLdndwlwGGTLEGIHTTIKhGIRDPDDGDTYVGEMPAFGPLLEEADIKDVASYVMSL 192
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 34-102 9.81e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 36.80  E-value: 9.81e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 520912036   34 CAACHGADGIAVIP-GYPNLK------GQNEQYIVTAIKayknkERNGGlapVMQAQASMLSDDDIANLAAYFASL 102
Cdd:TIGR00782 214 CTTCHGEDGKGLQElGAPNLTddvwlyGGDLKTITTTIT-----NGRGG---VMPAWGPRLSEAQIKALAAYVHSL 281
PRK13697 PRK13697
cytochrome c6; Provisional
 31-98 1.91e-03

cytochrome c6; Provisional


Pssm-ID: 184253 [Multi-domain]  Cd Length: 111  Bit Score: 34.76  E-value: 1.91e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 520912036  31 SAVCAACHgADGIAVIPGYPNLKGQN-EQYIVTAIKAYKNKERNGGLApvMQAQASMLSDDDIANLAAY 98
Cdd:PRK13697  36 SANCASCH-AGGKNLVNAGKTLKKADlEKYGMYSLEAITAQVTNGKNA--MPAFKDRLSPDQIEDVAAY 101
petJ CHL00183
cytochrome c553; Provisional
 31-101 2.09e-03

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 34.75  E-value: 2.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520912036  31 SAVCAACHgADGIAVIPGYPNLKGQN-EQYIVTAIKAYKNKERNGGLApvMQAQASMLSDDDIANLAAYFAS 101
Cdd:CHL00183  34 SANCAACH-AGGNNVIMPEKTLKKDAlEANSMNSIEAITYQVTNGKNA--MPAFGGRLSDEDIEDVANYVLS 102
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
34-103 3.44e-03

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 33.72  E-value: 3.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520912036  34 CAACHGADGIAVIPGYPNL----KGQ--NEQYIVTAIkayknkeRNGGL----APVMQAQASmLSDDDIANLAAYFASLK 103
Cdd:COG4654   16 CLACHAVDKKLVGPSYKDVakkyKGKadAVAKLAKKI-------KKGGSgvwgDVPMPPHPQ-LSDAEAKALVKWILSLK 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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