|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
3-628 |
0e+00 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 599.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 3 NKELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEIYTTipr 82
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDV--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 83 LRKSSQEGSAENETaeKSGKLAFLMETISGIFSPIIPAIAGAGILKGILALLLTFDILPKDSQNYQILNAISDGVFYLLP 162
Cdd:TIGR01995 78 LGLDDQAEDDDSKG--KKSILNKLIDLISGVFTPLLPALAGAGLLKAVLTLLTMTGLISADSQTYQILNAMGDAVFYFLP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 163 IVLAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAaskqSGIDISFFGLPITPASYASSVIPIILAIWLMSYVEKFIDKF 242
Cdd:TIGR01995 156 ILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVG----SGKPVTFFGIPVTLMSYSSSVIPVILAVWLMSYVEKFLKKV 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 243 MPGSLKTMFVPLFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLENMGWLAGLILGGTMSVLIITGMHYTLVPVMVNNV 322
Cdd:TIGR01995 232 IPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYEVSPWLAGALLAALWPVLVMFGLHWAMIPIVINNI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 323 STMGFDP-IKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAMGITEPAMYGVNIRLKRPFFAALIGGALGGSF 401
Cdd:TIGR01995 312 ATQGFDPlILPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFYAAMIGGAVGGAI 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 402 AVTAGVKAYAFTMSGLPGLPALAGPT----FFYAIGSMLISFVAAAAITYVVGFEDkpsstekeasvnktPASVVTQAKE 477
Cdd:TIGR01995 392 IGIGSVKAFTAFAPGLLGLPMFINPSdganFISALIAIVISFVVSFVLTYFIGFKD--------------QEDVVTQEAA 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 478 avKALAQETIFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIG 557
Cdd:TIGR01995 458 --ALSKDESLYAPVAGEMLPLNEVPDEVFSSGAMGKGIAILPTEGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVG 535
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520914461 558 IDTVKLNGRYFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSDYqeftLNESIREDEHVIK 628
Cdd:TIGR01995 536 IDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDF----LDVIPTDKETVTA 602
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
1-613 |
1.92e-170 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 500.01 E-value: 1.92e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 1 MSNKELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSkvcdEIYTTI 80
Cdd:PRK09824 1 MEYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVA----DVFLAV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 81 PRLRKSSQEGSAENETAEKSGKLAFLMETISGIFSPIIPAIAGAGILKGILALLLTFDILPKDSQNYQILNAISDGVFYL 160
Cdd:PRK09824 77 NSVAGLGEKAQQAPENDKKGNLLNRFIDVISGIFTPLIGVMAATGILKGMLALALTFGWTTEQSGTYKILFAASDALFFF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 161 LPIVLAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAASKQSG-IDISFFGLPITPASYASSVIPIILAIWLMSYVEKFI 239
Cdd:PRK09824 157 FPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKADaLGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 240 DKFMPGSLKTMFVPLFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLENMGWLAGLILGGTMSVLIITGMHYTLVPVMV 319
Cdd:PRK09824 237 NAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPLATWLSELLAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLVPLMI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 320 NNVSTMGFDPIKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAMGITEPAMYGVNIRLKRPFFAALIGGALGG 399
Cdd:PRK09824 317 NNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCISGALGA 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 400 SFAVTAGVKAYAFtmsGLPGL--------PALAGPTFFYAIGSMLISFVAAAAITYVVGFEDkpsstekeASVNKTPASV 471
Cdd:PRK09824 397 AIIGYAQTKVYSF---GLPSIftfmqtipPTGIDFTVWASVIGTVIAIGCAFVGTVMFGFPT--------AKRQPAQVAP 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 472 VTQAKEAVKALAQETIFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAE 551
Cdd:PRK09824 466 QEKTPEVITPPEQGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVGEVRSPVAGRVASLFATLHAIGLESDDGVE 545
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520914461 552 ILIHIGIDTVKLNGRYFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSDYQE 613
Cdd:PRK09824 546 VLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDDYTD 607
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
97-568 |
1.01e-116 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 356.17 E-value: 1.01e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 97 AEKSGKLAFLMETISGIFSPIIPAIAGAGILKGILALLLTFDIL---PKDSQNYQILNAISDGVFYLLPIVLAHSCSVRF 173
Cdd:COG1263 2 KKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLgegSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 174 KCNSYVAMAIAAALFHPSLSGLFAASkqsGIDISFFGLPiTPASYASSVIPIILAIWLMSYVEKFIDKFMPGSLKTMFVP 253
Cdd:COG1263 82 GGNPALAAVIGYLLVHPTLLNAYAVA---GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDALGFFFVP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 254 LFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLENMGWLAGLILGGTMSVLIITGMHYTLVPVMVNNVSTMGFDPIKPL 333
Cdd:COG1263 158 ILTLLIMVPLALLVIGPIWPPIGNGIAAGLGWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGTGDDGLFPI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 334 FFVANLGQAGAAFGVFLKTK-DKKMKSLALSVSLTAAM-GITEPAMYGVNIRLKRPFFAALIGGALGGSFAVTAGVKAYA 411
Cdd:COG1263 238 LAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFS 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 412 FTMSGLPGLPALAGP---TFFYAIGSMLISFVAAAAITYVVGFEDKPSSTEKEASVNKTPASVVTQAKEAVKALAqetif 488
Cdd:COG1263 318 FGVGGLIDFPSILNPgatNLLLYLIGLVIAFVYYFVFTFLIGREDEEEEEKLATKADAKKEEAEAAAAALGGGGG----- 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 489 ppvkgefvkLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGIDTVKLNGRYF 568
Cdd:COG1263 393 ---------LLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLEGLGE 463
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
5-455 |
3.69e-89 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 285.15 E-value: 3.69e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 5 ELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEIYTTIPRLR 84
Cdd:PRK09796 7 ALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 85 KSSQEGSAENETAEKSGklAFLMETISGIFSPIIPAIAGAGILKGILALLLTFDILPKDSQNYQILNAISDGVFYLLPIV 164
Cdd:PRK09796 87 QPAQPVGKPKLTLRRIG--AGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFFLPLM 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 165 LAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAASKQsGIDISFFGLPITPASYASSVIPIILAIWLMSYVEKFIDKFMP 244
Cdd:PRK09796 165 VAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQ-GEHVEFALIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 245 GSLKTMFVPLFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLENMGWLAGLILGGTMSVLIITGMHYTLVPVMVNNVST 324
Cdd:PRK09796 244 AVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAE 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 325 MGFDP-IKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAM-GITEPAMYGVNIRLKRPFFAALIGGALGGSFA 402
Cdd:PRK09796 324 TGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLISGFICGAVA 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 520914461 403 VTAGVKAYAFTMSGL--------PGLPAlagpTFFYAIGSMLISFVAAAAITYVVGFEDKP 455
Cdd:PRK09796 404 GMAGLASHSMAAPGLftsvqffdPANPM----SIVWVFAVMALAVVLSFILTLLLGFEDIP 460
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
4-451 |
1.93e-82 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 266.98 E-value: 1.93e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 4 KELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGD-RVSKVCDEiyttipr 82
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGPgTVDKVYAA------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 83 LRKSSQEGSAENETAEKSGK-----LAFLMETISGIFSPIIPAIAGAGILKGILALL----LTF------DILPKDSQNY 147
Cdd:TIGR01992 74 LIAETGIAEVSKEEVKKAAAknmnpLQRLIKLLADIFIPILPAIITAGLLMGINNLLgakgMSFggqtlvEVYPQWAGIY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 148 QILNAISDGVFYLLPIVLAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAASKQ-SGIDI---SFFG-LPITPASYASSV 222
Cdd:TIGR01992 154 NFINLIAETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQAlAEGNIpvwDLFGfFEIQKVGYQGQV 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 223 IPIILAIWLMSYVEKFIDKFMPGSLKTMFVPLFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLENMGWLAGLILGGTM 302
Cdd:TIGR01992 234 LPALLAGYVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFTSAAWLGGAIFGLLY 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 303 SVLIITGMHYTLVPVMVNNVSTMGFDPIKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAMGITEPAMYGVNI 382
Cdd:TIGR01992 314 APLVITGLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNL 393
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 520914461 383 RLKRPFFAALIGGALGGSFAVTAGVKAYAFTMSGLPGlpalagptFFYAIGSMLISFVAAAAITYVVGF 451
Cdd:TIGR01992 394 KYKFPFIAAMIGSGLAGLLSGLNGVLANSIGVGGLPG--------FISIQPQYWPVFAIGMAIAIVVPF 454
|
|
| NagE |
COG2190 |
Phosphotransferase system IIA component [Carbohydrate transport and metabolism]; |
480-619 |
8.39e-59 |
|
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
Pssm-ID: 441793 [Multi-domain] Cd Length: 154 Bit Score: 194.19 E-value: 8.39e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 480 KALAQETIFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGID 559
Cdd:COG2190 1 KKSKTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGGKVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGID 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 560 TVKLNGRYFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSDYQEFTLNES 619
Cdd:COG2190 81 TVKLNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKS 140
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
154-434 |
1.22e-57 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 196.00 E-value: 1.22e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 154 SDGVFYLLPIVLAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAASKQSgiDISFFGLPITPASYASSVIPIILAIWLMS 233
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQA--VGNFFGFEIAKVGYTGVVGPIIVGAIALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 234 YVEKFIDKFMPGSLKTMFVPLFTLIIVTPITLSVLGPIGLFLG-GNLTGGVLWLLENMGWLAGLILGGTMSVLIITGMHY 312
Cdd:TIGR00852 79 LHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPpVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 313 TLVPVMVNNV---STMGFDPIKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAMGITEPAMYGVNIRLKRPFF 389
Cdd:TIGR00852 159 IFYAIFIQLIaggTVIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 520914461 390 AALIGGALGGSFAVTAGVKAYAFTMSGLPGL----PALAGPTFFYAIGS 434
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLysihAVLAGSIFTVAIGM 287
|
|
| PTS_EIIA_1 |
pfam00358 |
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; |
485-605 |
3.64e-53 |
|
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
Pssm-ID: 459779 [Multi-domain] Cd Length: 121 Bit Score: 177.96 E-value: 3.64e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 485 ETIFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGIDTVKLN 564
Cdd:pfam00358 1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEGKVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKLK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 520914461 565 GRYFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVV 605
Cdd:pfam00358 81 GEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
3-449 |
2.35e-52 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 187.20 E-value: 2.35e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 3 NKELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVskvcDEIYTTipr 82
Cdd:PRK11007 6 NQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEV----GDYYKA--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 83 LRKSSQEGSAENETAEKSGK--LAFLMETISG---IFSPIIPAIAGAGILKG---ILALLLTFD------ILPKDSQNYQ 148
Cdd:PRK11007 79 LIATTGQAEVDKEQAKKAARqnMKWHERLISHfaeIFFPLLPALISGGLILGfrnVIGDIPMSDgqtlaqMYPFWQTIYD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 149 ILNAISDGVFYLLPIVLAHSCSVRFKCNSYVAMAIAAALFHPSLSGLFAASKQSGiDISFFGL-PITPASYASSVIPIIL 227
Cdd:PRK11007 159 FLWLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLP-EVWDFGLfSIEKVGYQAQVIPALL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 228 AIWLMSYVEKFIDKFMPGSLKTMFVPLFTLIIVTPITLSVLGPIGLFLGGNLTGGVLWLLE-NMGWLAGLILGGTMSVLI 306
Cdd:PRK11007 238 AGLALGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTgSFAPIGAALFGFLYAPLV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 307 ITGMHYTLVPVMVNNVSTMGFDPIKPLFFVANLGQAGAAFGVFLKTKDKKMKSLALSVSLTAAMGITEPAMYGVNIRLKR 386
Cdd:PRK11007 318 ITGVHQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRF 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520914461 387 PFFAALIGGALGGSFAVTAGVKAYAFTMSGLPGLPALAgPTFF--YAIgSMLISFVAAAAITYVV 449
Cdd:PRK11007 398 PMLCAMIGSALAGLICGLNGVMANGIGVGGLPGILSIQ-PQYWqvYAL-AMLVAIVVPIVLTSFI 460
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
3-451 |
8.14e-52 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 185.65 E-value: 8.14e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 3 NKELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILG--------DRVSKVCD 74
Cdd:PRK09586 5 SSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaqraaKAMNELLG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 75 EIYTTIPRLRKSSQEGSAENETAEKSGKLAFLMEtISGIFSPIIPAIAGAGILKGILALLLTFDILPKDSQNYQI----- 149
Cdd:PRK09586 85 EAAAPVQDLAEIAAQNKRQLKAKQTSGVQQFLAK-FATIFTPLIPGFIAAGLLLGIATLIEQVMHVPADAQGTLPdalny 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 150 LNAISDGVFYLLPIVLAHSCSVRFKcNSYVAMAIAAALF----HPS-LSGLFaaskqSGIDiSFFGLPITPasyASSVIP 224
Cdd:PRK09586 164 MKVFSKGLFTFLSILIGYNAQQAFG-GTGVNGAIIASLFllgyNPAaTTGYY-----AGFH-DFFGLPIDP---RGNIIG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 225 IILAIWLMSYVEKFIDKFMPGSLKTMFVPLFTLIIVTPITLSVLGPIglflGGNLTGGVLWLLENMGW--LAGLILGGTM 302
Cdd:PRK09586 234 VLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPL----GGWLFEGMSWLFMHLNSnpFGCAVLAGLF 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 303 SVLIITGMHYTLVPVMVNNVSTMGFDPIKPLFFVANLGQAGAAFGVFLKT-KDKKMKSLALSVSLTAAMGITEPAMYGVN 381
Cdd:PRK09586 310 LIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAqKHSALRTQVKGAIIPGLLGVGEPLIYGVT 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 382 IRLKRPFFAALIGGALGGSFavtAGVKAYaftmSGLP-GLPALAGPTFFYAIGSM---------LISFVAAAAITYVVGF 451
Cdd:PRK09586 390 LPRMKPFVTACLGGAAGGFF---IGLIAW----LGLPvGLNSVFGPSGLVALPLMtsaqgilpgMAVYAGGLLVAYVCGF 462
|
|
| PTS_IIA_glc |
cd00210 |
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
487-610 |
7.58e-49 |
|
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Pssm-ID: 238128 [Multi-domain] Cd Length: 124 Bit Score: 166.31 E-value: 7.58e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 487 IFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGIDTVKLNGR 566
Cdd:cd00210 1 LASPITGEIVPLDQVPDEVFASKMMGDGFAIKPSDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 520914461 567 YFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSD 610
Cdd:cd00210 81 GFTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
|
|
| PTBA |
TIGR00830 |
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ... |
487-607 |
3.12e-44 |
|
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273289 [Multi-domain] Cd Length: 121 Bit Score: 153.94 E-value: 3.12e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 487 IFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGIDTVKLNGR 566
Cdd:TIGR00830 1 IVSPISGEIVPLDQVPDEVFASKIVGDGFAILPTDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGE 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 520914461 567 YFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTN 607
Cdd:TIGR00830 81 GFTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
111-395 |
1.15e-34 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 134.01 E-value: 1.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 111 SGIFSPIIPAIAGAGILKGIL-----ALLLTFDILPKDSQNYQILNAISDGVFYLLPIVLAHSCSVRF-KCNSYVAMAIA 184
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpndTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGAAGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 185 AALFHPSLS---GLFAASKQSGIDISFFGLPITPASYASSVIPIILAIWLMSYVEKFIDKFMPGSLKTMFVPLFTLIIVT 261
Cdd:pfam02378 81 IGLLSFNLAaaiSVALTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPIITG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 262 PITLSVLGPIGLFLGGNLTGGVLWLLENM----GWLAGLILGGTMSVLIITGMHYTLVPVMV------------NNVSTM 325
Cdd:pfam02378 161 FVTLLVIGPVLGLIWPAIQGGLNALGLLLiiagGILGGLIFGFLERLLWPFGLHGAFIAIFWflpiggsnpianQQAYGA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 520914461 326 GFDPIKPLFFVANLGQAGAAFGV---FLKTKDKKMKSLALSVSLTAAM-GITEPAMYGVNIRLKRPFF-AALIGG 395
Cdd:pfam02378 241 GAAHILTGGFDVMFGGPGATLALyaaAFLFKKSKVKKLLGSAALTPFLfGITEPLEFGFPFVLNPPFFiPAILAG 315
|
|
| PRK09439 |
PRK09439 |
PTS system glucose-specific transporter subunit; Provisional |
487-615 |
1.97e-27 |
|
PTS system glucose-specific transporter subunit; Provisional
Pssm-ID: 181859 [Multi-domain] Cd Length: 169 Bit Score: 108.91 E-value: 1.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 487 IFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTKHAIAITSDNGAEILIHIGIDTVKLNGR 566
Cdd:PRK09439 23 IIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 520914461 567 YFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSDYQEFT 615
Cdd:PRK09439 103 GFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELI 151
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
4-76 |
8.84e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 100.58 E-value: 8.84e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 520914461 4 KELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLdGVFGTNLSGDQFQVILGDRVSKVCDEI 76
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEI 72
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
462-616 |
1.05e-24 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 109.19 E-value: 1.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 462 ASVNKTPASVVTQAK-EAV-KALAQETIFPPVKGEFVKLENVSDPVFATETFGKGLAIKPYEGLVTSPVNGVVTSIFPTK 539
Cdd:PRK10255 474 ASAEATPATAAPVAKpQAVpNAVSIAELVSPITGDVVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTN 553
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 520914461 540 HAIAITSDNGAEILIHIGIDTVKLNGRYFSSNIEDGDTITLGQPLVEFELESLEREGIDTSVIMVVTNTSDYQEFTL 616
Cdd:PRK10255 554 HAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFSGLII 630
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
4-76 |
6.53e-24 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 95.68 E-value: 6.53e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 520914461 4 KELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEI 76
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
9-39 |
1.53e-10 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 56.22 E-value: 1.53e-10
10 20 30
....*....|....*....|....*....|.
gi 520914461 9 QIVRLVGGDDNITVLFHCITRLRFNLKDLSK 39
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
5-87 |
2.54e-10 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 62.36 E-value: 2.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 5 ELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGdrvSKVCDEIYTTIPRLR 84
Cdd:PRK14905 276 EIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILG---AGIVEKIHEEMKALL 352
|
...
gi 520914461 85 KSS 87
Cdd:PRK14905 353 ARE 355
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
5-66 |
1.61e-07 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 49.28 E-value: 1.61e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520914461 5 ELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLdGVFGTNLSGDQFQVILG 66
Cdd:TIGR00826 28 FTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVDDAVLKKL-GAHGVNPLQRAVQVISG 88
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
10-81 |
4.13e-07 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 52.81 E-value: 4.13e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 520914461 10 IVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEIYTTIP 81
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQVQSVKDEMAGLMH 526
|
|
| FrwC |
COG1299 |
Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and ... |
81-463 |
4.27e-07 |
|
Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism];
Pssm-ID: 440910 [Multi-domain] Cd Length: 469 Bit Score: 52.97 E-value: 4.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 81 PRLRKSSQEGSAENETAEKSGKLAF---LMetiSGIfSPIIPAIAGAGILkgiLALLLTFDILPKDSQNYQ------ILN 151
Cdd:COG1299 108 AVYAAGGAAAAAESEEKKKSGGSGIykhLM---TGV-SYMLPFVVAGGIL---IALSFLFGIYAFDPGDVSegtlaaALF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 152 AISDGVFYLLPIVLAhscsvrfkcnSYVAMAIA-----AALFhpsLSGLFAASKQSGidisFFGlpitpasyasSVIPII 226
Cdd:COG1299 181 QIGGAAFGLMVPVLA----------GYIAYSIAdrpglAPGF---IGGLLANNIGAG----FLG----------GIIAGF 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 227 LAIWLMSYVEKFID--KFMPGSLKTMFVPLFTLIIVTPITLSVLG-PIGLFLGGnLTGGvlwlLENMG----WLAGLILG 299
Cdd:COG1299 234 LAGYVVLWLKKKIKlpKSLEGLKPILIIPLLGTLITGLLMIYVIGpPIAALNTA-LTNW----LNSMSgsnaVLLGAILG 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 300 GTMSV----------------LIITGMHYTLVPVMVNNVstmgfdpikplffVANLGQAGAAFgVFLKTKDKKMKSLALS 363
Cdd:COG1299 309 AMMAFdmggpvnkaayafgtgLLASGIYAPMAAVMAAGM-------------VPPLGLALATL-LFKKKFTEEEREAGKA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 364 VSLTAAMGITEPAMygvnirlkrPFFAA---------LIGGALGGSFAVTAGVKAYAfTMSGLPGLPALAGPTFFyaigs 434
Cdd:COG1299 375 AFILGLSFITEGAI---------PFAAAdplrvipsnMIGSAVAGALSMLFGVTLPA-PHGGIFVLPLVSNPLLY----- 439
|
410 420 430
....*....|....*....|....*....|
gi 520914461 435 mLISFVAAAAITYV-VGFEDKPSSTEKEAS 463
Cdd:COG1299 440 -LLAIAIGTVVTALlLGLLKKPVEKKEEAA 468
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
4-94 |
1.86e-06 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 48.17 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 4 KEL--ANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEIYTTIp 81
Cdd:PRK09702 68 KELdqAAGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLI- 146
|
90
....*....|...
gi 520914461 82 rlrksSQEGSAEN 94
Cdd:PRK09702 147 -----NSHQSAEN 154
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
2-68 |
3.02e-06 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 50.10 E-value: 3.02e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 520914461 2 SNKELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLdGVFGTNLSGDQFQVILGDR 68
Cdd:PRK11089 397 GTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKL-GAAGVVVAGSGVQAIFGTK 462
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
5-102 |
4.62e-05 |
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PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 46.40 E-value: 4.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 520914461 5 ELANQIVRLVGGDDNITVLFHCITRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILGDRVSKVCDEIYTTIPRLR 84
Cdd:PRK10255 391 QLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVGAKAESIGDAMKKVVARGP 470
|
90
....*....|....*...
gi 520914461 85 KSSQEGSAENETAEKSGK 102
Cdd:PRK10255 471 VAAASAEATPATAAPVAK 488
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| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
28-100 |
8.20e-05 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 41.58 E-value: 8.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 520914461 28 TRLRFNLKDLSKANKDAIADLDGVFGTNLSGDQFQVILG-DRVSKVcdeiYTTIPRLRKSSQEGSAENETAEKS 100
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGtGNVNKV----DACITRLRVGVADVSKVDDAVLKK 70
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