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Conserved domains on  [gi|521078277|ref|WP_020409184|]
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hypothetical protein [Hahella ganghwensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gamma_NF038106 NF038106
PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, ...
 3-95 6.84e-48

PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, and apparently restricted to the Gammaproteobacteria. Members include PA4642 from Pseudomonas aeruginosa PAO1.


:

Pssm-ID: 411685  Cd Length: 93  Bit Score: 147.69  E-value: 6.84e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521078277   3 GPSQPKVIGEDWSDDRVKGFLDLKPYDNRDPDYHVLRESYEYMLAGDYARLVKFFVDAGRNINALGPDGQTMLDRVSEHA 82
Cdd:NF038106   1 KKDKQKVIGEEWSDERVKSFLDVEPPDGTNADFHVLIKAYRGMRAEDFERFVGFFVEAGRDLNATDPDGQTFLDIIAEHR 80

                         90
                 ....*....|...
gi 521078277  83 KGQEYAVLLKEAG 95
Cdd:NF038106  81 QSAEYAEALKAAG 93
 
Name Accession Description Interval E-value
gamma_NF038106 NF038106
PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, ...
 3-95 6.84e-48

PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, and apparently restricted to the Gammaproteobacteria. Members include PA4642 from Pseudomonas aeruginosa PAO1.


Pssm-ID: 411685  Cd Length: 93  Bit Score: 147.69  E-value: 6.84e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521078277   3 GPSQPKVIGEDWSDDRVKGFLDLKPYDNRDPDYHVLRESYEYMLAGDYARLVKFFVDAGRNINALGPDGQTMLDRVSEHA 82
Cdd:NF038106   1 KKDKQKVIGEEWSDERVKSFLDVEPPDGTNADFHVLIKAYRGMRAEDFERFVGFFVEAGRDLNATDPDGQTFLDIIAEHR 80

                         90
                 ....*....|...
gi 521078277  83 KGQEYAVLLKEAG 95
Cdd:NF038106  81 QSAEYAEALKAAG 93
 
Name Accession Description Interval E-value
gamma_NF038106 NF038106
PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, ...
 3-95 6.84e-48

PA4642 family protein; Member of this family are small (about 95 amino acids), uncharacterized, and apparently restricted to the Gammaproteobacteria. Members include PA4642 from Pseudomonas aeruginosa PAO1.


Pssm-ID: 411685  Cd Length: 93  Bit Score: 147.69  E-value: 6.84e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521078277   3 GPSQPKVIGEDWSDDRVKGFLDLKPYDNRDPDYHVLRESYEYMLAGDYARLVKFFVDAGRNINALGPDGQTMLDRVSEHA 82
Cdd:NF038106   1 KKDKQKVIGEEWSDERVKSFLDVEPPDGTNADFHVLIKAYRGMRAEDFERFVGFFVEAGRDLNATDPDGQTFLDIIAEHR 80

                         90
                 ....*....|...
gi 521078277  83 KGQEYAVLLKEAG 95
Cdd:NF038106  81 QSAEYAEALKAAG 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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