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Conserved domains on  [gi|521288147|ref|WP_020452415|]
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MULTISPECIES: post-transcriptional regulator [Bacillus]

Protein Classification

post-transcriptional regulator( domain architecture ID 10619123)

post-transcriptional regulator such as Bacillus subtilis ComN (YrzD), a small protein involved in the post-transcriptional control of the late competence comE operon

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Post_transc_reg pfam13797
Post-transcriptional regulator; This family includes post-transcriptional regulators.
 7-88 8.81e-31

Post-transcriptional regulator; This family includes post-transcriptional regulators.


:

Pssm-ID: 404651  Cd Length: 83  Bit Score: 103.87  E-value: 8.81e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521288147   7 DLYKDHLKPFLRSKTEEFRILGYDDIEIEELWSYLLNKKWKKKKDVQIHQLAGDILSVKIGEFMNYATVESFKTSNLLDS 86
Cdd:pfam13797  2 DLWREDLEPALQSKAEEFRLLGYDRITEDDLWAYLTEKKWKKKEELRLHELVQDILSLKINEYMDYLTLEAYKEPNLLFS 81


                 ..
gi 521288147  87 KE 88
Cdd:pfam13797 82 EE 83
 
Name Accession Description Interval E-value
Post_transc_reg pfam13797
Post-transcriptional regulator; This family includes post-transcriptional regulators.
 7-88 8.81e-31

Post-transcriptional regulator; This family includes post-transcriptional regulators.


Pssm-ID: 404651  Cd Length: 83  Bit Score: 103.87  E-value: 8.81e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521288147   7 DLYKDHLKPFLRSKTEEFRILGYDDIEIEELWSYLLNKKWKKKKDVQIHQLAGDILSVKIGEFMNYATVESFKTSNLLDS 86
Cdd:pfam13797  2 DLWREDLEPALQSKAEEFRLLGYDRITEDDLWAYLTEKKWKKKEELRLHELVQDILSLKINEYMDYLTLEAYKEPNLLFS 81


                 ..
gi 521288147  87 KE 88
Cdd:pfam13797 82 EE 83
 
Name Accession Description Interval E-value
Post_transc_reg pfam13797
Post-transcriptional regulator; This family includes post-transcriptional regulators.
 7-88 8.81e-31

Post-transcriptional regulator; This family includes post-transcriptional regulators.


Pssm-ID: 404651  Cd Length: 83  Bit Score: 103.87  E-value: 8.81e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 521288147   7 DLYKDHLKPFLRSKTEEFRILGYDDIEIEELWSYLLNKKWKKKKDVQIHQLAGDILSVKIGEFMNYATVESFKTSNLLDS 86
Cdd:pfam13797  2 DLWREDLEPALQSKAEEFRLLGYDRITEDDLWAYLTEKKWKKKEELRLHELVQDILSLKINEYMDYLTLEAYKEPNLLFS 81


                 ..
gi 521288147  87 KE 88
Cdd:pfam13797 82 EE 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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