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Conserved domains on  [gi|521289938|ref|WP_020454206|]
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MULTISPECIES: YodC family protein [Enterobacteriaceae]

Protein Classification

YodC family protein( domain architecture ID 10009335)

YodC family protein is a DUF2158 domain-containing protein; similar to Escherichia coli protein YodC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YodC COG5475
Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];
1-51 2.11e-21

Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];


:

Pssm-ID: 444226  Cd Length: 53  Bit Score: 77.70  E-value: 2.11e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 521289938  1 MVFLVSDEVQSKKGGPLMIVTGY-ASGMVECRWYDGYGVKREAFREDELMPG 51
Cdd:COG5475   2 MKFKVGDVVQLKSGGPAMTVTGVlDSGMVECVWFDGGELQREAFPEDTLEKV 53
 
Name Accession Description Interval E-value
YodC COG5475
Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];
1-51 2.11e-21

Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];


Pssm-ID: 444226  Cd Length: 53  Bit Score: 77.70  E-value: 2.11e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 521289938  1 MVFLVSDEVQSKKGGPLMIVTGY-ASGMVECRWYDGYGVKREAFREDELMPG 51
Cdd:COG5475   2 MKFKVGDVVQLKSGGPAMTVTGVlDSGMVECVWFDGGELQREAFPEDTLEKV 53
DUF2158 pfam09926
Uncharacterized small protein (DUF2158); Members of this family of prokaryotic proteins have ...
 5-48 1.69e-05

Uncharacterized small protein (DUF2158); Members of this family of prokaryotic proteins have no known function.


Pssm-ID: 430932  Cd Length: 52  Bit Score: 37.49  E-value: 1.69e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 521289938   5 VSDEVQSKKGGPLMIVTGYASGM------VECRWYDGYGVKR-EAFREDEL 48
Cdd:pfam09926  2 TGDVVTLKSGGPRMTVTYAGPVAafpgnwLICQWFDGAGELRqEMFPEETL 52
 
Name Accession Description Interval E-value
YodC COG5475
Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];
1-51 2.11e-21

Uncharacterized conserved protein YodC, DUF2158 family [Function unknown];


Pssm-ID: 444226  Cd Length: 53  Bit Score: 77.70  E-value: 2.11e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 521289938  1 MVFLVSDEVQSKKGGPLMIVTGY-ASGMVECRWYDGYGVKREAFREDELMPG 51
Cdd:COG5475   2 MKFKVGDVVQLKSGGPAMTVTGVlDSGMVECVWFDGGELQREAFPEDTLEKV 53
DUF2158 pfam09926
Uncharacterized small protein (DUF2158); Members of this family of prokaryotic proteins have ...
 5-48 1.69e-05

Uncharacterized small protein (DUF2158); Members of this family of prokaryotic proteins have no known function.


Pssm-ID: 430932  Cd Length: 52  Bit Score: 37.49  E-value: 1.69e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 521289938   5 VSDEVQSKKGGPLMIVTGYASGM------VECRWYDGYGVKR-EAFREDEL 48
Cdd:pfam09926  2 TGDVVTLKSGGPRMTVTYAGPVAafpgnwLICQWFDGAGELRqEMFPEETL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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