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Conserved domains on  [gi|522002498|ref|WP_020513769|]
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ABC transporter permease subunit [Paractinoplanes globisporus]

Protein Classification

ABC-2 transporter permease( domain architecture ID 229465)

ABC-2 transporter permease is the transmembrane component of an ABC-2 type transporter complex that mediates the ATP-mediated transport of one or more from a variety of substrates; similar to Escherichia coli heme exporter protein CcmB and Mycobacterium tuberculosis daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC2_membrane super family cl21474
ABC-2 type transporter;
75-281 7.14e-05

ABC-2 type transporter;


The actual alignment was detected with superfamily member pfam12679:

Pssm-ID: 473876 [Multi-domain]  Cd Length: 281  Bit Score: 43.54  E-value: 7.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498   75 MDPDFADATSYSLALFGVPFSLIALGVLGVLTAS----GEYTSGMIRSTLAAVPRRLPVLWSKAAVYGVIaFVTGAVGAL 150
Cdd:pfam12679  54 FEYVSAASALDEADDTDIDITAFLIPVIAALLGAdaiaGERERGTIELLLSLPVSRSEILLGKFIGRLAI-GLILAVALL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498  151 AGFLLSSGVLSGTAAGMSLSDGGVVRGLLGAGLYLGLVGVIGVALGTLLRST--AGGISALVGTFLLVPGLMSLL----- 223
Cdd:pfam12679 133 AGVLLALAITLALGDPLDLGDLLLLVAASVLLALALVFLSIGLLLSSVARSTrtAAAIALGLFFVLAILWPIVLYglael 212

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522002498  224 ------PKSWRDDLTPYLPSN----AGESIFALHHSTGTLSAGAGLLVLLGWTALALGGAAYRLMRSD 281
Cdd:pfam12679 213 lagpapPQELLDFLLFLNPTSpyntLLSTILAGSDLSLYGSTATNLLILLAWIAVPLALAYVLFKRKD 280
 
Name Accession Description Interval E-value
ABC2_membrane_2 pfam12679
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 75-281 7.14e-05

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family.


Pssm-ID: 403774 [Multi-domain]  Cd Length: 281  Bit Score: 43.54  E-value: 7.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498   75 MDPDFADATSYSLALFGVPFSLIALGVLGVLTAS----GEYTSGMIRSTLAAVPRRLPVLWSKAAVYGVIaFVTGAVGAL 150
Cdd:pfam12679  54 FEYVSAASALDEADDTDIDITAFLIPVIAALLGAdaiaGERERGTIELLLSLPVSRSEILLGKFIGRLAI-GLILAVALL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498  151 AGFLLSSGVLSGTAAGMSLSDGGVVRGLLGAGLYLGLVGVIGVALGTLLRST--AGGISALVGTFLLVPGLMSLL----- 223
Cdd:pfam12679 133 AGVLLALAITLALGDPLDLGDLLLLVAASVLLALALVFLSIGLLLSSVARSTrtAAAIALGLFFVLAILWPIVLYglael 212

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522002498  224 ------PKSWRDDLTPYLPSN----AGESIFALHHSTGTLSAGAGLLVLLGWTALALGGAAYRLMRSD 281
Cdd:pfam12679 213 lagpapPQELLDFLLFLNPTSpyntLLSTILAGSDLSLYGSTATNLLILLAWIAVPLALAYVLFKRKD 280
EfiE COG4200
Predicted lantabiotic-exporting membrane pepmease, EfiE/EfiG/ABC2 family [Defense mechanisms];
27-281 5.59e-03

Predicted lantabiotic-exporting membrane pepmease, EfiE/EfiG/ABC2 family [Defense mechanisms];


Pssm-ID: 443354 [Multi-domain]  Cd Length: 250  Bit Score: 37.63  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498  27 RRVLRSEWAKLWSLRSTWITLGLGLLFLLAFGTIAALRYKSMLNSGqrMDPDFADATSYSLALFGVPFSLIALGVLGVLT 106
Cdd:COG4200    3 LRLLRAELLKLKRSLIWLLVLLLPLLSALLGLFNYLLNYEILQPYN--DGDGWLSLWTQSFLFWSFFFLPLLIALLASLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498 107 ASGEYTSGMIRSTLAAVPRRLPVLWSKAAVYGVIAFVTGAVgaLAGFLLSSGVLSGTAAGMSLSDggVVRGLLGAGLYLG 186
Cdd:COG4200   81 ARLEHKNGNWKQLLTLPVSRAKLYLAKLLVVALLLLLSQLL--FFVLYLLSGLLLGLSGSIPWGE--LLKWLLLGWLASL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498 187 LVGVIGVALGTLLRSTAggISALVGTFLLVPGLMSLLPKSWRDDLTPY----LPSNAGESIFALHHSTGTlsagaGLLVL 262
Cdd:COG4200  157 PLIALQLWLSLRFRSFA--APVGIGIVGTIAGLLASVTGSGLGYYYPWslpvLGMRSNGLGDLSSVSLVL-----FLLVS 229

                        250
                 ....*....|....*....
gi 522002498 263 LGWTALALGGAAYRLMRSD 281
Cdd:COG4200  230 LLYFVLFLILGILWFKRRD 248
 
Name Accession Description Interval E-value
ABC2_membrane_2 pfam12679
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 75-281 7.14e-05

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family.


Pssm-ID: 403774 [Multi-domain]  Cd Length: 281  Bit Score: 43.54  E-value: 7.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498   75 MDPDFADATSYSLALFGVPFSLIALGVLGVLTAS----GEYTSGMIRSTLAAVPRRLPVLWSKAAVYGVIaFVTGAVGAL 150
Cdd:pfam12679  54 FEYVSAASALDEADDTDIDITAFLIPVIAALLGAdaiaGERERGTIELLLSLPVSRSEILLGKFIGRLAI-GLILAVALL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498  151 AGFLLSSGVLSGTAAGMSLSDGGVVRGLLGAGLYLGLVGVIGVALGTLLRST--AGGISALVGTFLLVPGLMSLL----- 223
Cdd:pfam12679 133 AGVLLALAITLALGDPLDLGDLLLLVAASVLLALALVFLSIGLLLSSVARSTrtAAAIALGLFFVLAILWPIVLYglael 212

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 522002498  224 ------PKSWRDDLTPYLPSN----AGESIFALHHSTGTLSAGAGLLVLLGWTALALGGAAYRLMRSD 281
Cdd:pfam12679 213 lagpapPQELLDFLLFLNPTSpyntLLSTILAGSDLSLYGSTATNLLILLAWIAVPLALAYVLFKRKD 280
EfiE COG4200
Predicted lantabiotic-exporting membrane pepmease, EfiE/EfiG/ABC2 family [Defense mechanisms];
27-281 5.59e-03

Predicted lantabiotic-exporting membrane pepmease, EfiE/EfiG/ABC2 family [Defense mechanisms];


Pssm-ID: 443354 [Multi-domain]  Cd Length: 250  Bit Score: 37.63  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498  27 RRVLRSEWAKLWSLRSTWITLGLGLLFLLAFGTIAALRYKSMLNSGqrMDPDFADATSYSLALFGVPFSLIALGVLGVLT 106
Cdd:COG4200    3 LRLLRAELLKLKRSLIWLLVLLLPLLSALLGLFNYLLNYEILQPYN--DGDGWLSLWTQSFLFWSFFFLPLLIALLASLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498 107 ASGEYTSGMIRSTLAAVPRRLPVLWSKAAVYGVIAFVTGAVgaLAGFLLSSGVLSGTAAGMSLSDggVVRGLLGAGLYLG 186
Cdd:COG4200   81 ARLEHKNGNWKQLLTLPVSRAKLYLAKLLVVALLLLLSQLL--FFVLYLLSGLLLGLSGSIPWGE--LLKWLLLGWLASL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522002498 187 LVGVIGVALGTLLRSTAggISALVGTFLLVPGLMSLLPKSWRDDLTPY----LPSNAGESIFALHHSTGTlsagaGLLVL 262
Cdd:COG4200  157 PLIALQLWLSLRFRSFA--APVGIGIVGTIAGLLASVTGSGLGYYYPWslpvLGMRSNGLGDLSSVSLVL-----FLLVS 229

                        250
                 ....*....|....*....
gi 522002498 263 LGWTALALGGAAYRLMRSD 281
Cdd:COG4200  230 LLYFVLFLILGILWFKRRD 248
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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