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Conserved domains on  [gi|522057059|ref|WP_020568268|]
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integrase core domain-containing protein, partial [Neolewinella persica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS3 super family cl41295
IS3 family transposase;
1-55 3.64e-09

IS3 family transposase;


The actual alignment was detected with superfamily member NF033516:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 51.80  E-value: 3.64e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAH 55
Cdd:NF033516 314 NAVAESFFGTLKRECLyRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
1-55 3.64e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 51.80  E-value: 3.64e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAH 55
Cdd:NF033516 314 NAVAESFFGTLKRECLyRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-58 3.66e-09

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 51.69  E-value: 3.66e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 522057059   1 NPVAERINGILKTELLQD-GYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAHKMM 58
Cdd:COG2801  247 NAFIESFFGTLKYELLYRrRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQL 305
rve_3 pfam13683
Integrase core domain;
1-51 3.56e-07

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 43.36  E-value: 3.56e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTP 51
Cdd:pfam13683 16 NGLVESFNGTLRDECLnEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 4-54 2.55e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.87  E-value: 2.55e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 522057059   4 AERINGILKTELLQDG-YPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQA 54
Cdd:NF033577 231 VERFHRTLKDEFAYARpYESLAELQAALDEWLHHYNHHRPHSALGGKTPAER 282
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-56 9.96e-03

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 33.30  E-value: 9.96e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAHK 56
Cdd:PHA02517 208 NAPAESINGLYKAEVIhRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAEAEK 264
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
1-55 3.64e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 51.80  E-value: 3.64e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAH 55
Cdd:NF033516 314 NAVAESFFGTLKRECLyRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-58 3.66e-09

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 51.69  E-value: 3.66e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 522057059   1 NPVAERINGILKTELLQD-GYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAHKMM 58
Cdd:COG2801  247 NAFIESFFGTLKYELLYRrRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQL 305
rve_3 pfam13683
Integrase core domain;
1-51 3.56e-07

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 43.36  E-value: 3.56e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTP 51
Cdd:pfam13683 16 NGLVESFNGTLRDECLnEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 4-54 2.55e-03

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.87  E-value: 2.55e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 522057059   4 AERINGILKTELLQDG-YPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQA 54
Cdd:NF033577 231 VERFHRTLKDEFAYARpYESLAELQAALDEWLHHYNHHRPHSALGGKTPAER 282
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 1-56 9.96e-03

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 33.30  E-value: 9.96e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 522057059   1 NPVAERINGILKTELL-QDGYPTHEEALEAVAEAIRIYNEERPHRSVDMMTPLQAHK 56
Cdd:PHA02517 208 NAPAESINGLYKAEVIhRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAEAEK 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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