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Conserved domains on  [gi|522058450|ref|WP_020569659|]
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50S ribosomal protein L19 [Neolewinella persica]

Protein Classification

RplS family protein( domain architecture ID 10001229)

RplS family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RplS COG0335
Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 ...
1-116 1.07e-58

Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440104  Cd Length: 116  Bit Score: 176.39  E-value: 1.07e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   1 MDAISFIhEQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPA 80
Cdd:COG0335    1 MNLIKEI-EAEQLKKDIPEFRPGDTVRVHVKIKEGNKERIQVFEGVVIARRGGGLNETFTVRKISYGVGVERTFPLHSPR 79
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 522058450  81 IDGIAIVKHGKVRRSRLFYLRDRVGKKARIKERRIK 116
Cdd:COG0335   80 IEKIEVVRRGKVRRAKLYYLRDLRGKAARIKEKRDA 115
 
Name Accession Description Interval E-value
RplS COG0335
Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 ...
1-116 1.07e-58

Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440104  Cd Length: 116  Bit Score: 176.39  E-value: 1.07e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   1 MDAISFIhEQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPA 80
Cdd:COG0335    1 MNLIKEI-EAEQLKKDIPEFRPGDTVRVHVKIKEGNKERIQVFEGVVIARRGGGLNETFTVRKISYGVGVERTFPLHSPR 79
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 522058450  81 IDGIAIVKHGKVRRSRLFYLRDRVGKKARIKERRIK 116
Cdd:COG0335   80 IEKIEVVRRGKVRRAKLYYLRDLRGKAARIKEKRDA 115
rplS PRK05338
50S ribosomal protein L19; Provisional
1-114 2.30e-56

50S ribosomal protein L19; Provisional


Pssm-ID: 235418  Cd Length: 116  Bit Score: 170.28  E-value: 2.30e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   1 MDAISFIhEQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPA 80
Cdd:PRK05338   1 MNLIKEI-EAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHSPR 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 522058450  81 IDGIAIVKHGKVRRSRLFYLRDRVGKKARIKERR 114
Cdd:PRK05338  80 IDSIEVVRRGKVRRAKLYYLRELRGKAARIKERR 113
Ribosomal_L19 pfam01245
Ribosomal protein L19;
9-111 2.01e-53

Ribosomal protein L19;


Pssm-ID: 460130  Cd Length: 108  Bit Score: 162.55  E-value: 2.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450    9 EQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPAIDGIAIVK 88
Cdd:pfam01245   6 EKEQLKKDIPEFRPGDTVRVHVKIKEGNKERIQVFEGVVIARRGGGINETFTVRKISYGVGVERTFPLHSPRIEKIEVVR 85
                          90       100
                  ....*....|....*....|...
gi 522058450   89 HGKVRRSRLFYLRDRVGKKARIK 111
Cdd:pfam01245  86 RGKVRRAKLYYLRDLRGKAARIK 108
rplS_bact TIGR01024
ribosomal protein L19, bacterial type; This model describes bacterial ribosomoal protein L19 ...
9-114 4.07e-44

ribosomal protein L19, bacterial type; This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130096  Cd Length: 113  Bit Score: 139.37  E-value: 4.07e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450    9 EQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPAIDGIAIVK 88
Cdd:TIGR01024   8 EQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHSPRIDSIEVVR 87
                          90       100
                  ....*....|....*....|....*.
gi 522058450   89 HGKVRRSRLFYLRDRVGKKARIKERR 114
Cdd:TIGR01024  88 RGKVRRAKLYYLRERRGKAARIKERR 113
 
Name Accession Description Interval E-value
RplS COG0335
Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 ...
1-116 1.07e-58

Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L19 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440104  Cd Length: 116  Bit Score: 176.39  E-value: 1.07e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   1 MDAISFIhEQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPA 80
Cdd:COG0335    1 MNLIKEI-EAEQLKKDIPEFRPGDTVRVHVKIKEGNKERIQVFEGVVIARRGGGLNETFTVRKISYGVGVERTFPLHSPR 79
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 522058450  81 IDGIAIVKHGKVRRSRLFYLRDRVGKKARIKERRIK 116
Cdd:COG0335   80 IEKIEVVRRGKVRRAKLYYLRDLRGKAARIKEKRDA 115
rplS PRK05338
50S ribosomal protein L19; Provisional
1-114 2.30e-56

50S ribosomal protein L19; Provisional


Pssm-ID: 235418  Cd Length: 116  Bit Score: 170.28  E-value: 2.30e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   1 MDAISFIhEQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPA 80
Cdd:PRK05338   1 MNLIKEI-EAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHSPR 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 522058450  81 IDGIAIVKHGKVRRSRLFYLRDRVGKKARIKERR 114
Cdd:PRK05338  80 IDSIEVVRRGKVRRAKLYYLRELRGKAARIKERR 113
Ribosomal_L19 pfam01245
Ribosomal protein L19;
9-111 2.01e-53

Ribosomal protein L19;


Pssm-ID: 460130  Cd Length: 108  Bit Score: 162.55  E-value: 2.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450    9 EQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPAIDGIAIVK 88
Cdd:pfam01245   6 EKEQLKKDIPEFRPGDTVRVHVKIKEGNKERIQVFEGVVIARRGGGINETFTVRKISYGVGVERTFPLHSPRIEKIEVVR 85
                          90       100
                  ....*....|....*....|...
gi 522058450   89 HGKVRRSRLFYLRDRVGKKARIK 111
Cdd:pfam01245  86 RGKVRRAKLYYLRDLRGKAARIK 108
rplS_bact TIGR01024
ribosomal protein L19, bacterial type; This model describes bacterial ribosomoal protein L19 ...
9-114 4.07e-44

ribosomal protein L19, bacterial type; This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130096  Cd Length: 113  Bit Score: 139.37  E-value: 4.07e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450    9 EQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPAIDGIAIVK 88
Cdd:TIGR01024   8 EQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHSPRIDSIEVVR 87
                          90       100
                  ....*....|....*....|....*.
gi 522058450   89 HGKVRRSRLFYLRDRVGKKARIKERR 114
Cdd:TIGR01024  88 RGKVRRAKLYYLRERRGKAARIKERR 113
rpl19 CHL00084
ribosomal protein L19
9-113 8.57e-39

ribosomal protein L19


Pssm-ID: 177023  Cd Length: 117  Bit Score: 125.81  E-value: 8.57e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 522058450   9 EQVSNKTDLPAFRAGDTVVVDYRITEGEKSRIQQFRGDVIQIKGEGLTKTFTVRKISNGIGVERIFPLSSPAIDGIAIVK 88
Cdd:CHL00084  12 ESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLLHSPKLASIEVLR 91
                         90       100
                 ....*....|....*....|....*
gi 522058450  89 HGKVRRSRLFYLRDRVGKKARIKER 113
Cdd:CHL00084  92 RSKVRRAKLYYLRNRVGKAARLKQK 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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