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Conserved domains on  [gi|526019309|ref|WP_020838946|]
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MULTISPECIES: glycine betaine/L-proline ABC transporter permease ProW [Vibrio]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 5-343 0e+00

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK10952:

Pssm-ID: 444901  Cd Length: 355  Bit Score: 526.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309   5 QTNNDPWS-----QAAPTQEDPWSQGSEAATNN---DWLNS-EAVQETPFDIMNPFQDAVLPLDNWVESGLNWLVEHGRP 75
Cdd:PRK10952   3 ADQNNPWDttpaaDSAAQSADAWGTPAGAPTDGggaDWLNSaPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  76 VFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFSNFKLGLSTLVSLVFIGLIGAWSQAMTTLALVLTSVFFCLL 155
Cdd:PRK10952  83 VFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 156 IGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAG 235
Cdd:PRK10952 163 IGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEAS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 236 HSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLAAVGGLGIVILAILLD 315
Cdd:PRK10952 243 RSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILD 322

                        330       340       350
                 ....*....|....*....|....*....|.
gi 526019309 316 RITQELGVNA---GNTklRWYHTGPISYLLK 343
Cdd:PRK10952 323 RLTQAVGRDSrsrGNR--RWYTTGPVGLLTR 351
 
Name Accession Description Interval E-value
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
5-343 0e+00

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 526.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309   5 QTNNDPWS-----QAAPTQEDPWSQGSEAATNN---DWLNS-EAVQETPFDIMNPFQDAVLPLDNWVESGLNWLVEHGRP 75
Cdd:PRK10952   3 ADQNNPWDttpaaDSAAQSADAWGTPAGAPTDGggaDWLNSaPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  76 VFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFSNFKLGLSTLVSLVFIGLIGAWSQAMTTLALVLTSVFFCLL 155
Cdd:PRK10952  83 VFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 156 IGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAG 235
Cdd:PRK10952 163 IGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEAS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 236 HSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLAAVGGLGIVILAILLD 315
Cdd:PRK10952 243 RSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILD 322

                        330       340       350
                 ....*....|....*....|....*....|.
gi 526019309 316 RITQELGVNA---GNTklRWYHTGPISYLLK 343
Cdd:PRK10952 323 RLTQAVGRDSrsrGNR--RWYTTGPVGLLTR 351
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 48-322 1.92e-153

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 432.60  E-value: 1.92e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  48 MNPFQDAVLPLDNWVESGLNWLVEHGRPVFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFSNFKLGLSTLVSL 127
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRLRGWRLALFTALGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 128 VFIGLIGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVV 207
Cdd:COG4176   81 LLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 208 TIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQM 287
Cdd:COG4176  161 TVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQE 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 526019309 288 VLRGIGRLDMGLAAVGGLGIVILAILLDRITQELG 322
Cdd:COG4176  241 VLRALQRLDIGLGFEAGLAIVILAIILDRITQALG 275
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
53-318 1.45e-90

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 272.68  E-value: 1.45e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309   53 DAVLPLDNWVESGLNWLVEHGRPVFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFS-NFKLGLSTLVSLVFIG 131
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQrSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  132 LIGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIF 211
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  212 ALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRG 291
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 526019309  292 IGRLDMGLAAVGGLGIVILAILLDRIT 318
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 139-314 3.40e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 92.34  E-value: 3.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 139 AMTTLALVLTSVFFCLLIGLPMGIWLARSQ-TAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNV---------PGVVVT 208
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 209 IIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMV 288
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*.
gi 526019309 289 LRGIGRLDMGLAAVGGLGIVILAILL 314
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 157-314 1.49e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 82.35  E-value: 1.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  157 GLPMGIWLARSQ--TAAKFVRPILDAMQTTPAFVYLVPIVML-----FGIGNVPGVVVTIIFALPPVVRLTILGIQQVPE 229
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  230 ELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMI-AVGGLGQMVLRGIGRLDMGLAAVGGLGIV 308
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 526019309  309 ILAILL 314
Cdd:pfam00528 161 LILLLL 166
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 142-246 2.41e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 41.38  E-value: 2.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 142 TLALVLTSVFFCLLIGLPMGIWLA-RSQTAAKFVRPILDA-MQTTPAFVYLVPIVML-----FGIGNV---PG--VVVTI 209
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLAlRRFPGRRLVISLLNTlMGLPPVVVGLIVYLLLsrsgpLGFLGLlytPTamIIAQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 526019309 210 IFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQML 246
Cdd:NF038017  81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
 
Name Accession Description Interval E-value
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
5-343 0e+00

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 526.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309   5 QTNNDPWS-----QAAPTQEDPWSQGSEAATNN---DWLNS-EAVQETPFDIMNPFQDAVLPLDNWVESGLNWLVEHGRP 75
Cdd:PRK10952   3 ADQNNPWDttpaaDSAAQSADAWGTPAGAPTDGggaDWLNSaPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRP 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  76 VFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFSNFKLGLSTLVSLVFIGLIGAWSQAMTTLALVLTSVFFCLL 155
Cdd:PRK10952  83 VFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCIV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 156 IGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAG 235
Cdd:PRK10952 163 IGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEAS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 236 HSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLAAVGGLGIVILAILLD 315
Cdd:PRK10952 243 RSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILD 322

                        330       340       350
                 ....*....|....*....|....*....|.
gi 526019309 316 RITQELGVNA---GNTklRWYHTGPISYLLK 343
Cdd:PRK10952 323 RLTQAVGRDSrsrGNR--RWYTTGPVGLLTR 351
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 48-322 1.92e-153

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 432.60  E-value: 1.92e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  48 MNPFQDAVLPLDNWVESGLNWLVEHGRPVFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFSNFKLGLSTLVSL 127
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRLRGWRLALFTALGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 128 VFIGLIGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVV 207
Cdd:COG4176   81 LLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 208 TIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQM 287
Cdd:COG4176  161 TVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQE 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 526019309 288 VLRGIGRLDMGLAAVGGLGIVILAILLDRITQELG 322
Cdd:COG4176  241 VLRALQRLDIGLGFEAGLAIVILAIILDRITQALG 275
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
53-318 1.45e-90

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 272.68  E-value: 1.45e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309   53 DAVLPLDNWVESGLNWLVEHGRPVFQAIRVPIDFILSSFETALVSTPSPIMVLILFLLAWQFS-NFKLGLSTLVSLVFIG 131
Cdd:TIGR03416   1 DHKIPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQrSWSLALFVLLGLLLII 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  132 LIGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIF 211
Cdd:TIGR03416  81 NQGYWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  212 ALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRG 291
Cdd:TIGR03416 161 AIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRA 240

                         250       260
                  ....*....|....*....|....*..
gi 526019309  292 IGRLDMGLAAVGGLGIVILAILLDRIT 318
Cdd:TIGR03416 241 LNTVNIALGFEAGLAIVVLAIVLDRMF 267
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 136-317 4.38e-45

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 153.67  E-value: 4.38e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 136 WSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPP 215
Cdd:COG1174   17 LALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLP 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 216 VVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRGIGRL 295
Cdd:COG1174   97 ILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDGLQLN 176

                        170       180
                 ....*....|....*....|..
gi 526019309 296 DMGLAAVGGLGIVILAILLDRI 317
Cdd:COG1174  177 NTALILAGAILVALLALLVDLL 198
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 101-317 7.02e-40

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 141.44  E-value: 7.02e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 101 PIMVLILFLLAWQF-------SNFKLG-----LSTLVSLVFIGLIgaWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQ 168
Cdd:COG0600   15 PLLSLALLLALWELaarlglvPPFLLPspsavLAALVELLASGEL--WEHLLASLLRVLLGFALAALLGVPLGLLLGLSR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 169 TAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYR 248
Cdd:COG0600   93 LLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRK 172

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 249 IQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVG-GLGQMVLRGIGRLDMGLAAVGGLGIVILAILLDRI 317
Cdd:COG0600  173 VVLPAALPYIFTGLRIALGLAWIGLVVAELLGASsGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLL 242
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 139-314 3.40e-22

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 92.34  E-value: 3.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 139 AMTTLALVLTSVFFCLLIGLPMGIWLARSQ-TAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNV---------PGVVVT 208
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 209 IIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMV 288
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*.
gi 526019309 289 LRGIGRLDMGLAAVGGLGIVILAILL 314
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 157-314 1.49e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 82.35  E-value: 1.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  157 GLPMGIWLARSQ--TAAKFVRPILDAMQTTPAFVYLVPIVML-----FGIGNVPGVVVTIIFALPPVVRLTILGIQQVPE 229
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  230 ELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMI-AVGGLGQMVLRGIGRLDMGLAAVGGLGIV 308
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 526019309  309 ILAILL 314
Cdd:pfam00528 161 LILLLL 166
PRK10160 PRK10160
taurine ABC transporter permease TauC;
136-334 2.02e-15

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 75.59  E-value: 2.02e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 136 WSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPP 215
Cdd:PRK10160  77 WQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAP 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 216 VVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVG-GLGQMVLRGIGR 294
Cdd:PRK10160 157 VAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLGFMVQSAGEF 236

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 526019309 295 LDMGLAAVGGLGIVILAILLdritqELGVNAGNTKLRWYH 334
Cdd:PRK10160 237 LATDVVLAGIAVIAIIAFLL-----ELGLRALQRRLTPWH 271
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 136-314 1.86e-13

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 69.37  E-value: 1.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 136 WSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAK-FVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTII---- 210
Cdd:COG1177   60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRrLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLIlahv 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 211 -FALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGG------ 283
Cdd:COG1177  140 vFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvttlpv 219

                        170       180       190
                 ....*....|....*....|....*....|..
gi 526019309 284 -LGQMVLRGIgrlDMGLAAVGGLGIVILAILL 314
Cdd:COG1177  220 yIYSMIRRGI---SPEINALSTLLILLSLLLL 248
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 142-322 2.42e-12

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 65.46  E-value: 2.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 142 TLALVLTSVFFCLLIGLPMGIWLARSQ----TAAKFVRPILDA----MQTTPAFVYLVPIV----MLFG--IGNVPGVVV 207
Cdd:COG2011   19 TLYMVGVSTLIAVLLGLPLGVLLVLTRpgglLPNPVLYRVLGVivniFRSIPFIILLVALIpltrLIVGtsIGTTAAIVP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 208 TIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQM 287
Cdd:COG2011   99 LTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAGAVGGGGLGDL 178

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 526019309 288 VLR-GIGRLDMGLAAVgglgIVILAILLDRITQELG 322
Cdd:COG2011  179 AIRyGYQRFDTDVMLV----TVVILIVLVQIIQFLG 210
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 102-321 6.06e-12

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 64.87  E-value: 6.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  102 IMVLILFLLAWQFSNFKLGLSTLVSLV--FIGLIG------------AWSQAMTTLALVLTSVFFCLLIGLPMGIWLARS 167
Cdd:TIGR01097   9 LLALLVALYVWAFALLGFDLARLLAGPgqMADLLGrmfppdwsylprILKALLETLAMAILGTVLAAVLAVPLALLAARN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309  168 QTAAKFV----RPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKK 243
Cdd:TIGR01097  89 ITPSPWLyglaRLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKL 168

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 526019309  244 QMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLAAVGGLGIVILAILLDRITQEL 321
Cdd:TIGR01097 169 QVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDTAIGLFDYDEVSAIILVILVVVVIIDLISARL 246
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 136-314 6.17e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 65.55  E-value: 6.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 136 WSQAMTTLALVLTSVFFCLLIGLPMGIWLARsqtAAKFVRPILDAMQTTPAFV-YLV----------------------- 191
Cdd:COG1176   66 LKVLLRTLWIALLTTLICLLLGYPIAYFLAR---APPRWRNLLLLLVILPFWTsFLVrtyawivllgrngllnslllalg 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 192 ----PIVMLFgigNVPGVVVTIIFALPPVVRLTILG-IQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTL 266
Cdd:COG1176  143 lidePLRLLY---TEFAVVIGLVYVYLPFMVLPLYAaLEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVF 219

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 526019309 267 MLSLSMVVIASMIavGGLGQMVL------RGIGRLDMGLAAVggLGIVILAILL 314
Cdd:COG1176  220 IPALGAFVTPALL--GGGKVLMIgnliyqQFLSALNWPLAAA--LAVVLLLIVL 269
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
101-316 2.99e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 61.33  E-value: 2.99e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 101 PIMVLILFLLAWQFSNFklgLSTLVSLVFIGLIGawsqamTTLALVLTSVFFCLLIGLPMGIWLARSQ-TAAKFVRPILD 179
Cdd:COG1178   27 PLLALLLRAFTDGLANF---WALLSDPYLWRALG------NTLLLALLVTLLSLLLGVPLAWLLARTDfPGRRLLRWLLL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 180 AMQTTPAFVYLVPIVMLFG-------------------IGNVPGVV-VTIIFALPPVVRLTILGIQQVPEELIEAGHSFG 239
Cdd:COG1178   98 LPLALPPYVVALAWIALFGpngllntllralfgleppdIYGLGGIIlVLVLFNYPYVYLLLRAALRSIDASLEEAARSLG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 240 ANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIavGGLGQMVLRGI-----GRLDMGLAAVGG---LGIVILA 311
Cdd:COG1178  178 ASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GGGYTTLTTAIyqawlGDFDLGAAAALAlvlLLLVLLL 255


                 ....*
gi 526019309 312 ILLDR 316
Cdd:COG1178  256 LLLER 260
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
102-314 8.59e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 59.79  E-value: 8.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 102 IMVLILFLLAWQFSNFKLGLSTLVSLVFIGL-IGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTaakFVRPILDA 180
Cdd:COG1178  302 LLLPLLALLLWSLTKALDDNLTLDNYRFVLLdPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG---RLARLLDR 378

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 181 MQTTPafvYLVPIVMLfGIG-----NVPG-----------VVVTIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQ 244
Cdd:COG1178  379 LAMLP---YAVPGIVL-GLGllllfNRPLplllygtlailVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLR 454

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 526019309 245 MLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGG---LGQMVLRGIGRLDMGLAAVGGLGIVILAILL 314
Cdd:COG1178  455 TLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGfetLAVLIYQLASSGRYGEAAALALLLVLVSLLP 527
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 192-314 2.25e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 54.62  E-value: 2.25e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 192 PIVMLFGIGNVpgVVVTIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLS 271
Cdd:PRK15050 154 PLDFLYSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLN 231

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 526019309 272 MVVIASMIAVGGLGQM-VL---RGIGRLDMGLAAVGGLGIVILAILL 314
Cdd:PRK15050 232 EFGIVLFTGAKDVVTLpVLiysKAIVDFDYPTACAIAVVNLALSLGL 278
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
142-287 3.07e-08

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 53.58  E-value: 3.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 142 TLALVLTSVFFCLLIGLPMGIWL--------ARSQTAAKFVRPILDAMQTTPAFVYLVPIV----MLFG--IGNVPGVVV 207
Cdd:PRK10782  16 TLAMTFVSGFFGFVIGLPVGVLLyvtrpgqiIANAKLYRTLSALVNIFRSIPFIILLVWMIpftrVIVGtsIGLQAAIVP 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 208 TIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGLGQM 287
Cdd:PRK10782  96 LTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI 175
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 100-262 2.78e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 51.29  E-value: 2.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 100 SPIMVLILFLLAWQFSNfkLGLSTLVSLVFIGLIgaWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTaakFVRPILD 179
Cdd:COG0555   21 SLIVLLPLAALVLKAAG--LGWAEFWAVLTSPRV--LAALKLSLGTALIAALINLVFGLPLAWVLVRYRF---PGKRLVD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 180 AMQTTPaFVyLVPIV------MLFG----IGN------------VPGVVVTIIF-ALPPVVRLTILGIQQVPEELIEAGH 236
Cdd:COG0555   94 ALVDLP-FA-LPTAVagiallLLFGpngwLGQllaplgikvaftPLGIVLAQTFvSLPFVVRTVQPVLEELDPELEEAAA 171

                        170       180
                 ....*....|....*....|....*.
gi 526019309 237 SFGANKKQMLYRIQLPLALPTIMAGV 262
Cdd:COG0555  172 TLGASRWQTFRRVILPLLLPALLTGF 197
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
136-314 2.78e-07

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 51.29  E-value: 2.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 136 WSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFV--------------YLVPIVMLFGIGN 201
Cdd:COG1175   75 WNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVvaliwkwlfnpdygLLNALLGALGLEP 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 202 V----------PGVVVTIIFALPPVVRLTIL-GIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSL 270
Cdd:COG1175  155 InwlgdpslalPAVIIVTVWKGTGFNMLIFLaGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAL 234

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 526019309 271 SMVVIASMIAVGGLGQ--------MVLRGIGRLDMGLAAVggLGIVILAILL 314
Cdd:COG1175  235 QVFDLVYVLTGGGPGNstttlvlyIYQTAFQQFDFGYASA--IAVVLFLIIL 284
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
155-314 7.96e-07

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 49.93  E-value: 7.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 155 LIGLPMGIWLARSQTAAKFVRPILDAMQTTPAFVyLVPIVML-FGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIE 233
Cdd:PRK11365  78 SLGLILGLISGLSRWGERLLDTSIQMLRNVPHLA-LIPLVILwFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVE 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 234 AGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIASMIAVGGlgqmvlrGIGRLDMGLAAVGGLGIVILAIL 313
Cdd:PRK11365 157 MARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS-------GIGYLAMNAREFLQTDVVVVAII 229


                 .
gi 526019309 314 L 314
Cdd:PRK11365 230 L 230
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 101-312 3.56e-06

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 48.69  E-value: 3.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 101 PIMVLILFLLAWQFS----NFKLGLSTLVSLVFIGLIGawsQAMTTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRP 176
Cdd:COG4986   24 LLVLALLVLLAYGAKqmtaPLAPGETPPISLDPANLPY---YALRTTLRMFAALAASLLFTFVYATLAAKSRRAEKILIP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 177 ILDAMQTTPAFVYLvPIVMLFGI----GNVPGVVVTIIFALppvvrLT------ILGIQQ----VPEELIEAGHSFGANK 242
Cdd:COG4986  101 LLDILQSVPVLGFL-SFTVTFFIalfpGSLLGVELAAIFAI-----FTsqawnmAFSFYQslrtVPRDLDEAARIFRLSG 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 243 KQMLYRIQLPLALPtimaGVNQTLMLSLS----MVVIASMIAVG-------GLGQMVLRGIGRLDMG--LAAVGGLGIVI 309
Cdd:COG4986  175 WQRFWRLELPFAMP----GLVWNSMMSMSggwfFLVASEAISVGnqdirlpGIGSYLALAIAQGDLGaiGWAILAMLVVI 250


                 ...
gi 526019309 310 LAI 312
Cdd:COG4986  251 LLY 253
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 139-277 9.78e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 46.52  E-value: 9.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 139 AMTTLALVLTSVFFCLLIGLPMGIWLARSQ-TAAKFVRPILDAMQTTPAFVYLVPIVMLFGIGNVPGVVVT-----IIFA 212
Cdd:PRK09500  59 AQHSLTMAVFSATFATLIGSLTAVALYRYRfRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSllfahITFC 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 526019309 213 LPPVVrLTILG-IQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMVVIAS 277
Cdd:PRK09500 139 LPFVV-VTVYSrLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSS 203
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 102-261 3.66e-05

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 45.60  E-value: 3.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 102 IMVLILFLLAWQFSNFKLGLSTLVSLVFIGLIgawsqamtTLALVLTSVFFCLLIGLPMGIWLARSQTAAKFVRPIldaM 181
Cdd:COG4986  342 LLVLYGLWRLLLFLLTEVGLSEVLHVFLLGLL--------TLLRVVVLIALASLIWVPVGVWIGLRPRLARRLQPV---A 410

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 182 QTTPAFvylvPIVMLFgignvPGVVVTII-FALPP---VVRLTILGIQ------------QVPEELIEAGHSFGANKKQM 245
Cdd:COG4986  411 QFLASF----PANLLF-----PVAVLLIVrFGLNPniwLSPLMILGTQwyilfnviagasAIPNDLREAARNFGLRGWLW 481

                        170
                 ....*....|....*.
gi 526019309 246 LYRIQLPLALPTIMAG 261
Cdd:COG4986  482 WRRLILPGIFPYYVTG 497
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 112-260 4.81e-05

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 44.32  E-value: 4.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 112 WQFSNFKLGLSTlvslvfiglIGAWSQAMTTLALVLTSVFFCLLIGLPMGIWLARSQT-AAKFVRPILDAMQTTPAFVYL 190
Cdd:COG0395   58 FTLENYRAAFTD---------GPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFrGRKLLFLLILATLMIPGQVLL 128

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 526019309 191 VPIVMLFG----IGNVPGVVVT-IIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMA 260
Cdd:COG0395  129 IPLYLLFRqlglLNTYWGLILPyLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 140-279 9.41e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 43.52  E-value: 9.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 140 MTTLALVLTSVFFCLLIGLPMGIWLARSQTAakfVRPILDAMQTTPAFV-----------------YLVPIVMLFGIGNV 202
Cdd:PRK09497  66 LHSLNMALIATLACLVLGYPFAWFLAKLPHK---VRPLLLFLLIVPFWTnsliriyglkiflstkgYLNEFLLWLGVIDT 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 203 P--------GVVVTIIFALPPVVRLTIL-GIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIMAGVNQTLMLSLSMV 273
Cdd:PRK09497 143 PirimftesAVIIGLVYILLPFMVLPLYsSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222


                 ....*.
gi 526019309 274 VIASMI 279
Cdd:PRK09497 223 YVSDLL 228
pstA PRK11268
phosphate ABC transporter permease PstA;
103-262 1.25e-04

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 43.13  E-value: 1.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 103 MVLILFLLAW-QFSNFKLGLSTLVSLVFIGLIGAWSQAMTTLA--------LVLTSVFFCLLIGLPMGIWLA---RSQTA 170
Cdd:PRK11268  38 MAFGLFWLIWiLMSTITLGIDGMSLALFTEMTPPPNTAGGGLAnaiagsglLILWATVVGTPLGIMAGIYLAeygRKSWL 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 171 AKFVRPILDAMQTTPA-----FVYLVPIVMLFGIGNVPGVVVTIIFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQM 245
Cdd:PRK11268 118 AEVIRFINDILLSAPSivvglFVYTIVVAQMEHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKM 197

                        170
                 ....*....|....*..
gi 526019309 246 LYRIQLPLALPTIMAGV 262
Cdd:PRK11268 198 ISAITLKASVSGIMTGV 214
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 142-246 2.41e-04

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 41.38  E-value: 2.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 142 TLALVLTSVFFCLLIGLPMGIWLA-RSQTAAKFVRPILDA-MQTTPAFVYLVPIVML-----FGIGNV---PG--VVVTI 209
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLAlRRFPGRRLVISLLNTlMGLPPVVVGLIVYLLLsrsgpLGFLGLlytPTamIIAQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 526019309 210 IFALPPVVRLTILGIQQVPEELIEAGHSFGANKKQML 246
Cdd:NF038017  81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 142-315 3.54e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 41.98  E-value: 3.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 142 TLALVLTSVFFCLLIGLPMGIWLARSQ--TAAKFVRPILDAMQTTPAFVYLVPIVMLFGI--------GNVP---GVVVT 208
Cdd:COG0601   98 TLELALLALLLALLIGIPLGILAALRRgsWLDRLITVLALLGISIPSFWLGLLLILLFAVklgwlpvsGRVSpweDFLDA 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 209 IIFALPPVVRLTILGI--------QQVPEEL----IEAGHSFGANKKQMLYRIQLPLALPTIMAGvnqtLMLSLSMVVIA 276
Cdd:COG0601  178 LRHLILPALTLALGSLagiarltrSSMLEVLgqdyVRTARAKGLSERRVLLRHALRNALIPVVTV----LGLQLGGLLGG 253

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 526019309 277 SMI-----AVGGLGQMVLRGIGRLD----MGLAAVGGLGIVILAILLD 315
Cdd:COG0601  254 AVVvetvfSWPGLGRLLVDAILNRDypvvQGIVLLIAVLVVLVNLLVD 301
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 139-281 1.94e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 39.29  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 526019309 139 AMTTLALVLTSVFFCLLIGLPMGIW-LARSQTAAKFVRPILDAMQTTPAFVYLvpIVMLFGIGNVpGVVVTIIFALppVV 217
Cdd:COG0765   19 LLVTLLLTVLAIVLGLVLGLLLALArLSPNPVLRWLATAYVEFFRGTPLLVQL--FFIYFGLPLL-GIDLSPFVAA--VI 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 526019309 218 RLTIL-----------GIQQVPEELIEAGHSFGANKKQMLYRIQLPLALPTIM-AGVNQTLMLsLSMVVIASMIAV 281
Cdd:COG0765   94 ALTLNsaaylaeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILpPLGNEFISL-LKDTSLVSVIGV 168
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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