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Conserved domains on  [gi|527036685|ref|WP_020883426|]
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MULTISPECIES: YoaH family protein [Enterobacter]

Protein Classification

YoaH family protein( domain architecture ID 10006959)

YoaH family protein similar to Yersinia pseudotuberculosis UPF0181 protein YPTS_1774

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yoaH COG3140
Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];
1-58 1.17e-27

Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];


:

Pssm-ID: 442374  Cd Length: 58  Bit Score: 93.48  E-value: 1.17e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 527036685  1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGERIVARFEDDE 58
Cdd:COG3140   1 MFNGLPALTHEQQQQAVERIQQLMAQGMSSGEAIALVAQEIREEHQGEQVVVRFDDED 58
 
Name Accession Description Interval E-value
yoaH COG3140
Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];
1-58 1.17e-27

Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];


Pssm-ID: 442374  Cd Length: 58  Bit Score: 93.48  E-value: 1.17e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 527036685  1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGERIVARFEDDE 58
Cdd:COG3140   1 MFNGLPALTHEQQQQAVERIQQLMAQGMSSGEAIALVAQEIREEHQGEQVVVRFDDED 58
PRK05114 PRK05114
YoaH family protein;
1-59 6.62e-26

YoaH family protein;


Pssm-ID: 179941  Cd Length: 59  Bit Score: 89.31  E-value: 6.62e-26
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 527036685  1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGERIVARFEDDEE 59
Cdd:PRK05114  1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQGERIVARFEDEDE 59
UPF0181 pfam03701
Uncharacterized protein family (UPF0181); This family contains small proteins of about 50 ...
 1-49 2.65e-20

Uncharacterized protein family (UPF0181); This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH.


Pssm-ID: 427449  Cd Length: 50  Bit Score: 74.67  E-value: 2.65e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 527036685   1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGER 49
Cdd:pfam03701  1 MLDGLPSLTHEQQQQAVERIQQLMAQGMSSGEAIAIVAQELREEHQGKE 49
TCP1_epsilon cd03339
TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved ...
 40-60 7.05e-03

TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239455  Cd Length: 526  Bit Score: 32.27  E-value: 7.05e-03
                         10        20
                 ....*....|....*....|.
gi 527036685  40 ELRATHTGERIVARFEDDEEE 60
Cdd:cd03339  322 ELIAIATGGRIVPRFEDLSPE 342
 
Name Accession Description Interval E-value
yoaH COG3140
Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];
1-58 1.17e-27

Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown];


Pssm-ID: 442374  Cd Length: 58  Bit Score: 93.48  E-value: 1.17e-27
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 527036685  1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGERIVARFEDDE 58
Cdd:COG3140   1 MFNGLPALTHEQQQQAVERIQQLMAQGMSSGEAIALVAQEIREEHQGEQVVVRFDDED 58
PRK05114 PRK05114
YoaH family protein;
1-59 6.62e-26

YoaH family protein;


Pssm-ID: 179941  Cd Length: 59  Bit Score: 89.31  E-value: 6.62e-26
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 527036685  1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGERIVARFEDDEE 59
Cdd:PRK05114  1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQGERIVARFEDEDE 59
UPF0181 pfam03701
Uncharacterized protein family (UPF0181); This family contains small proteins of about 50 ...
 1-49 2.65e-20

Uncharacterized protein family (UPF0181); This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH.


Pssm-ID: 427449  Cd Length: 50  Bit Score: 74.67  E-value: 2.65e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 527036685   1 MFAGLPSLSHDQQQKAVERIQELMSQGMSSGQAITQVANELRATHTGER 49
Cdd:pfam03701  1 MLDGLPSLTHEQQQQAVERIQQLMAQGMSSGEAIAIVAQELREEHQGKE 49
TCP1_epsilon cd03339
TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved ...
 40-60 7.05e-03

TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.


Pssm-ID: 239455  Cd Length: 526  Bit Score: 32.27  E-value: 7.05e-03
                         10        20
                 ....*....|....*....|.
gi 527036685  40 ELRATHTGERIVARFEDDEEE 60
Cdd:cd03339  322 ELIAIATGGRIVPRFEDLSPE 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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