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Conserved domains on  [gi|544678885|ref|WP_021111109|]
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oxaloacetate decarboxylase subunit gamma [Glaesserella parasuis]

Protein Classification

oxaloacetate decarboxylase subunit gamma( domain architecture ID 10011867)

oxaloacetate decarboxylase subunit gamma (OadG) is a component of the heterotrimeric complex that catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 8.42e-30

oxaloacetate decarboxylase subunit gamma; Provisional


:

Pssm-ID: 235086  Cd Length: 82  Bit Score: 100.90  E-value: 8.42e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885  1 MTETELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVvETTQPSPQPAIP-NDLERLRPVIVAAIAHHRR 79
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPV-AAPAPRPVPVAPvDDFTRLKPVIAAAIHHHRR 79


                ...
gi 544678885 80 TQG 82
Cdd:PRK02919 80 LNA 82
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 8.42e-30

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 100.90  E-value: 8.42e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885  1 MTETELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVvETTQPSPQPAIP-NDLERLRPVIVAAIAHHRR 79
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPV-AAPAPRPVPVAPvDDFTRLKPVIAAAIHHHRR 79


                ...
gi 544678885 80 TQG 82
Cdd:PRK02919 80 LNA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-79 1.07e-21

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 80.37  E-value: 1.07e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885  1 MTETELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVVETTQ-PSPQPAIPNDLERLRPVIVAAIAHHRR 79
Cdd:COG3630   1 MTNSELLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFPEPEPAPVAtPSASAAPTADDPELVAAITAAIHHHRR 80
OAD_gamma pfam04277
Oxaloacetate decarboxylase, gamma chain;
9-78 1.01e-09

Oxaloacetate decarboxylase, gamma chain;


Pssm-ID: 461248  Cd Length: 76  Bit Score: 49.51  E-value: 1.01e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544678885   9 EGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPE-----PVVETTQPSPQPAIPNDLERLRPVIVAAIAHHR 78
Cdd:pfam04277  2 EGLLLTLLGMGVVFVFLILLSLVISLMSKIINKFAKKkkakaAAAAAAAAAAAAADLTDDPELVAVIAAAIAAYR 76
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 4-81 1.58e-08

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 46.66  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885   4 TELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVVETTQPSPQPAIP---NDLERLRPVIVAAIAHHRRT 80
Cdd:TIGR01195  1 NSLLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKVPEPPASAKKSKKAAVPavqDEDEELVAAIAAAVHEHLRK 80


                 .
gi 544678885  81 Q 81
Cdd:TIGR01195 81 T 81
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 8.42e-30

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 100.90  E-value: 8.42e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885  1 MTETELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVvETTQPSPQPAIP-NDLERLRPVIVAAIAHHRR 79
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPV-AAPAPRPVPVAPvDDFTRLKPVIAAAIHHHRR 79


                ...
gi 544678885 80 TQG 82
Cdd:PRK02919 80 LNA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-79 1.07e-21

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 80.37  E-value: 1.07e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885  1 MTETELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVVETTQ-PSPQPAIPNDLERLRPVIVAAIAHHRR 79
Cdd:COG3630   1 MTNSELLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFPEPEPAPVAtPSASAAPTADDPELVAAITAAIHHHRR 80
OAD_gamma pfam04277
Oxaloacetate decarboxylase, gamma chain;
9-78 1.01e-09

Oxaloacetate decarboxylase, gamma chain;


Pssm-ID: 461248  Cd Length: 76  Bit Score: 49.51  E-value: 1.01e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544678885   9 EGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPE-----PVVETTQPSPQPAIPNDLERLRPVIVAAIAHHR 78
Cdd:pfam04277  2 EGLLLTLLGMGVVFVFLILLSLVISLMSKIINKFAKKkkakaAAAAAAAAAAAAADLTDDPELVAVIAAAIAAYR 76
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 4-81 1.58e-08

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 46.66  E-value: 1.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544678885   4 TELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVVETTQPSPQPAIP---NDLERLRPVIVAAIAHHRRT 80
Cdd:TIGR01195  1 NSLLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKVPEPPASAKKSKKAAVPavqDEDEELVAAIAAAVHEHLRK 80


                 .
gi 544678885  81 Q 81
Cdd:TIGR01195 81 T 81
PRK03814 PRK03814
oxaloacetate decarboxylase subunit gamma; Provisional
 1-75 5.82e-05

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235161  Cd Length: 85  Bit Score: 37.85  E-value: 5.82e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544678885  1 MTE-TELITEGLNLMFVGMGFVMLFLLLLILAIQLMSHLINRYFPEPVvetTQPSPQPAIPNDLERLRPVIVAAIA 75
Cdd:PRK03814  1 MTDiGSLLVDAATLMLTGMGVVFIFLTLLVYLVQLMSKLIPQEVPEPI---AAPKKSKKQQPTSSAVSPQVVAAIS 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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