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Conserved domains on  [gi|544679861|ref|WP_021112034|]
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flavodoxin FldA [Glaesserella parasuis]

Protein Classification

flavodoxin( domain architecture ID 10013166)

flavodoxin is a low-potential electron donor to a number of redox enzymes; such as Escherichia coli flavodoxin 1 (FldA) that is involved in the reactivation of inactive cob(II)alamin in methionine synthase, and Azotobacter chroococcum flavodoxin B (NifF) that is the electron donor to nitrogenase

CATH:  3.40.50.360
Gene Ontology:  GO:0010181|GO:0009055
PubMed:  16465441
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 7.24e-108

flavodoxin FldA; Validated


:

Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.22  E-value: 7.24e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTG 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  81 KIVGIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDeTFVGLCIDEDRQPELTEERVNRW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDG-KFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 544679861 161 CKQIFDEMYL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 7.24e-108

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.22  E-value: 7.24e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTG 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  81 KIVGIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDeTFVGLCIDEDRQPELTEERVNRW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDG-KFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 544679861 161 CKQIFDEMYL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 4-168 3.57e-85

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 247.66  E-value: 3.57e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    4 VGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTGKIV 83
Cdd:TIGR01752   2 IGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   84 GIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDETFVGLCIDEDRQPELTEERVNRWCKQ 163
Cdd:TIGR01752  82 ALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVEQ 161


                  ....*
gi 544679861  164 IFDEM 168
Cdd:TIGR01752 162 IKPEF 166
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 4.43e-46

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 147.36  E-value: 4.43e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   4 VGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWyYGESQADWDDFMPTLKEiDFTGKIV 83
Cdd:COG0716    1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  84 GIFGCGDQEDYAeyfcDAMGTVRDVIEPNGGTIVghwstEGYTFEASQAlvddetfvglcidedRQPELTEERVNRWCKQ 163
Cdd:COG0716   79 ALFGTGDSSGYG----DALGELKELLEEKGAKVV-----GGYDFEGSKA---------------PDAEDTEERAEEWLKQ 134


                 .
gi 544679861 164 I 164
Cdd:COG0716  135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 1.46e-26

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 97.83  E-value: 1.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    6 LFYGSDTGNTENISKMIQKQLG-----ANLVDIRDIAKsTKEDIEAYDFLLIGIPTWYYGESQA------DWDDFMPTLK 74
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGeagfeVDVVDLDDVDE-TLSEIEEEDLLLVVVSTWGEGEPPDnakpfvDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   75 EIDFTGKIVGIFGCGDQEDYaeYFCDAMGTVRDVIEPNGGTIVghwstegytfeasqalvddetFVGLCIDEDRQPELTE 154
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLE 136


                  ....*.
gi 544679861  155 ERVNRW 160
Cdd:pfam00258 137 EAFEAW 142
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-121 1.22e-05

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 44.08  E-value: 1.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   6 LFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGesqadwddfMPT-----LKEIDFTG 80
Cdd:NF038196   1 IFYFSGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWG---------LPRivedfIKKLKLKG 71

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 544679861  81 --KIVGIFGCGDQEDYaeyfcdAMGTVRDVIEPNGGTIVGHWS 121
Cdd:NF038196  72 nkYIFAVATCGGSIGN------ALAQLKKLLKKKGLKLSGGFS 108
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-170 7.24e-108

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 305.22  E-value: 7.24e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTG 80
Cdd:PRK09267   1 MAKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  81 KIVGIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDeTFVGLCIDEDRQPELTEERVNRW 160
Cdd:PRK09267  81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDG-KFVGLALDEDNQSELTDERIEAW 159

                        170
                 ....*....|
gi 544679861 161 CKQIFDEMYL 170
Cdd:PRK09267 160 VKQIKPEFGL 169
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 4-168 3.57e-85

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 247.66  E-value: 3.57e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    4 VGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTGKIV 83
Cdd:TIGR01752   2 IGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKTV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   84 GIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDETFVGLCIDEDRQPELTEERVNRWCKQ 163
Cdd:TIGR01752  82 ALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDEDNQPDLTEERIEKWVEQ 161


                  ....*
gi 544679861  164 IFDEM 168
Cdd:TIGR01752 162 IKPEF 166
PRK12359 PRK12359
flavodoxin FldB; Provisional
 4-168 6.25e-62

flavodoxin FldB; Provisional


Pssm-ID: 183471 [Multi-domain]  Cd Length: 172  Bit Score: 189.01  E-value: 6.25e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   4 VGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFTGKIV 83
Cdd:PRK12359   3 IGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  84 GIFGCGDQEDYAEYFCDAMGTVRDVIEPNGGTIVGHWSTEGYTFEASQALVDDET-FVGLCIDEDRQPELTEERVNRWCK 162
Cdd:PRK12359  83 ALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQlFVGLALDEVNQYDLSDERIQQWCE 162


                 ....*.
gi 544679861 163 QIFDEM 168
Cdd:PRK12359 163 QILLEM 168
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-164 4.43e-46

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 147.36  E-value: 4.43e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   4 VGLFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWyYGESQADWDDFMPTLKEiDFTGKIV 83
Cdd:COG0716    1 ILIVYGSTTGNTEKVAEAIAEALGAAGVDLFEIEDADLDDLEDYDLLILGTPTW-AGELPDDWEDFLEELKE-DLSGKKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  84 GIFGCGDQEDYAeyfcDAMGTVRDVIEPNGGTIVghwstEGYTFEASQAlvddetfvglcidedRQPELTEERVNRWCKQ 163
Cdd:COG0716   79 ALFGTGDSSGYG----DALGELKELLEEKGAKVV-----GGYDFEGSKA---------------PDAEDTEERAEEWLKQ 134


                 .
gi 544679861 164 I 164
Cdd:COG0716  135 L 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-160 1.46e-26

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 97.83  E-value: 1.46e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    6 LFYGSDTGNTENISKMIQKQLG-----ANLVDIRDIAKsTKEDIEAYDFLLIGIPTWYYGESQA------DWDDFMPTLK 74
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGLGeagfeVDVVDLDDVDE-TLSEIEEEDLLLVVVSTWGEGEPPDnakpfvDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   75 EIDFTGKIVGIFGCGDQEDYaeYFCDAMGTVRDVIEPNGGTIVghwstegytfeasqalvddetFVGLCIDEDRQPELTE 154
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSGYE--GFCGAAKKLDEKLSELGASRV---------------------GPLGEGDEDPQEDGLE 136


                  ....*.
gi 544679861  155 ERVNRW 160
Cdd:pfam00258 137 EAFEAW 142
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 8-118 2.98e-18

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 76.61  E-value: 2.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    8 YGSDTGNTENISKMIQK--QLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGE-SQADWDDFMPTLKEIDFTGKIVG 84
Cdd:TIGR01753   5 YASMTGNTEEMANIIAEglKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDlEQDDFEPFFEELEDIDLGGKKVA 84

                          90       100       110
                  ....*....|....*....|....*....|....
gi 544679861   85 IFGCGDQEDyaeYFCDAMGTVRDVIEPNGGTIVG 118
Cdd:TIGR01753  85 LFGSGDWGY---EFCEAVDDWEERLKEAGATIIA 115
PRK06703 PRK06703
flavodoxin; Provisional
 1-117 6.85e-15

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 67.86  E-value: 6.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLGAN--LVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDF 78
Cdd:PRK06703   1 MAKILIAYASMSGNTEDIADLIKVSLDAFdhEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 544679861  79 TGKIVGIFGCGdqeDYA-EYFCDAMGTVRDVIEPNGGTIV 117
Cdd:PRK06703  81 SGKKVAVFGSG---DTAyPLFCEAVTIFEERLVERGAELV 117
PRK07308 PRK07308
flavodoxin; Validated
 1-115 1.11e-08

flavodoxin; Validated


Pssm-ID: 180922 [Multi-domain]  Cd Length: 146  Bit Score: 51.33  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLG--ANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDF 78
Cdd:PRK07308   1 MALAKIVYASMTGNTEEIADIVADKLRelGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDL 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 544679861  79 TGKIVGIFGCGDQedYAEYFCDAMGTVRDVIEPNGGT 115
Cdd:PRK07308  81 SGKIYGVVGSGDT--FYDYFCKSVDDFEAQFALTGAT 115
PRK06756 PRK06756
flavodoxin; Provisional
 1-90 2.56e-08

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 50.26  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQL--GANLVDIRDIAKS-TKEDIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEID 77
Cdd:PRK06756   1 MSKLVMIFASMSGNTEEMADHIAGVIreTENEIEVIDIMDSpEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSID 80

                         90
                 ....*....|...
gi 544679861  78 FTGKIVGIFGCGD 90
Cdd:PRK06756  81 LTGKKAAVFGSCD 93
NorV COG0426
Flavorubredoxin [Energy production and conversion];
4-89 9.20e-08

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 50.60  E-value: 9.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   4 VGLFYGSDTGNTENISKMIQKQLGANLVDIR--DIAKSTKEDI----EAYDFLLIGIPTwYYGESQADWDDFMPTLKEID 77
Cdd:COG0426  249 VVIVYASMYGNTEKMAEAIAEGLTEEGVKVKlyDLEKTDPSEIiteiFDAKGIVIGSPT-YNGGAFPPIADLLGYLKGLA 327

                         90
                 ....*....|..
gi 544679861  78 FTGKIVGIFGCG 89
Cdd:COG0426  328 PKNKLAGAFGSY 339
PRK09271 PRK09271
flavodoxin; Provisional
 6-101 1.22e-07

flavodoxin; Provisional


Pssm-ID: 181744  Cd Length: 160  Bit Score: 48.65  E-value: 1.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   6 LFYGSDTGNTENISKMIQKQLGA-----NLVDIRDIAKSTKE-DIEAYDFLLIGIPTWYYGESQADWDDFMPTLKEIDFT 79
Cdd:PRK09271   5 LAYASLSGNTREVAREIEERCEEaghevDWVETDVQTLAEYPlDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGK 84

                         90       100
                 ....*....|....*....|..
gi 544679861  80 GKIVGIFGCGDQEDYAEYFCDA 101
Cdd:PRK09271  85 PPNVAVFGTGETQWGEEYYCGA 106
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 6-121 1.22e-05

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 44.08  E-value: 1.22e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   6 LFYGSDTGNTENISKMIQKQLGANLVDIRDIAKSTKEDIEAYDFLLIGIPTWYYGesqadwddfMPT-----LKEIDFTG 80
Cdd:NF038196   1 IFYFSGTGNSLYVAKRIAEELGDELISISKAIKEGDFKLKEDEPIGFVFPVYAWG---------LPRivedfIKKLKLKG 71

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 544679861  81 --KIVGIFGCGDQEDYaeyfcdAMGTVRDVIEPNGGTIVGHWS 121
Cdd:NF038196  72 nkYIFAVATCGGSIGN------ALAQLKKLLKKKGLKLSGGFS 108
PRK06242 PRK06242
flavodoxin; Provisional
 13-127 6.30e-04

flavodoxin; Provisional


Pssm-ID: 180484 [Multi-domain]  Cd Length: 150  Bit Score: 38.36  E-value: 6.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861  13 GNTENISKMIQKQLGANLVDIRDIaksTKEDIEAYDflLI----GIptwYYGESQADWDDFMPTLKEIDftGKIVGIFG- 87
Cdd:PRK06242  13 GNTEKIAKAIAEVLDAEVIDPGDV---NPEDLSEYD--LIgfgsGI---YFGKFHKSLLKLIEKLPPVS--GKKAFIFSt 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 544679861  88 CGDQedyaeyFCDAMGTVRDVIEPNGGTIVGHWSTEGY-TF 127
Cdd:PRK06242  83 SGLP------FLKYHKALKKKLKEKGFEIVGEFSCKGFdTF 117
PRK05568 PRK05568
flavodoxin; Provisional
 1-87 9.92e-04

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 37.48  E-value: 9.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861   1 MAVVGLFYGSDTGNTENISKMIQKQLGANLVDIR--DIAKSTKEDIEAYDFLLIGIPTwyYGESQADWDDFMPTLKEI-- 76
Cdd:PRK05568   1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKllNVSEASVDDVKGADVVALGSPA--MGDEVLEEGEMEPFVESIss 78

                         90
                 ....*....|.
gi 544679861  77 DFTGKIVGIFG 87
Cdd:PRK05568  79 LVKGKKLVLFG 89
Flavodoxin_5 pfam12724
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins ...
 6-89 1.16e-03

Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 463681 [Multi-domain]  Cd Length: 144  Bit Score: 37.24  E-value: 1.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679861    6 LFYGSDTGNTENISKMIQKQLGAN--LVDIRDIAKStkEDIEAYDFLLIGIPTwYYGESQADWDDFMPTLKEiDFTGKIV 83
Cdd:pfam12724   2 ILYSSRDGQTKKIAERIAEELREEgeLVDVEDVEAG--EDLSSYDAVVIGASI-YYGKHLPELRQFVTKHRD-ELSSKPV 77


                  ....*.
gi 544679861   84 GIFGCG 89
Cdd:pfam12724  78 AFFSVN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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