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type IV pilus secretin PilQ [Glaesserella parasuis]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
HofQ super family
cl34825 Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
13-412
1.41e-142
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];
COG4796 :Pssm-ID: 443824 [Multi-domain]
Cd Length: 570
Bit Score: 418.10
E-value: 1.41e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 13 PVLANQQI SL SIRNA P TAEIISYL A EE TG K N IT ISD EIKDTKNF R VEKSHF D EI L NSLI K THQ L NLK K ENGIYYIH ---- 88
Cdd:COG4796 156 KGYTGEKL SL NFQDI P VRSVLQLI A DF TG L N LV ISD SVTGNITL R LKNVPW D QA L DIIL K AKG L DKR K NGNVLLVA paee 235
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 89 - Q A Q E HKQHTTA Q LVNA L PK L I T KT I K L H Y S KAS EVIES L TKGQ G N LLSE S G YLHF D D R S N SI IV K D SAASVKNFTQ LI E 167
Cdd:COG4796 236 l A A R E KLELEAK Q QIEE L EP L R T EY I Q L N Y A KAS DLAKL L KGQR G S LLSE R G SVTV D E R T N TL IV R D TPSKLEEIRR LI A 315
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 168 S LD K P TE Q IA IEARIV TI S SEHLQQ LGVRWG LFSP N E --- N HYKLA G N L E G NG ---- L TTNN LNVN F P V - NP SA S VA L QI 239
Cdd:COG4796 316 K LD I P VR Q VL IEARIV EA S DSFSRE LGVRWG GSGA N G tgn N RGGIG G S L N G TT agtp L LPDG LNVN L P A a NP AG S LG L TL 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 240 A AI - NS R V LDLEL T ALE S E NNI EII A SPR LL T T D KKP ASI K QGTEIPY AMY S KKEE i T DI EF R EAVL G LEVTP H I SKQNQ 318
Cdd:COG4796 396 A KL g GG R L LDLEL S ALE A E GKG EII S SPR VI T A D QQE ASI E QGTEIPY QES S SSGA - T SV EF K EAVL S LEVTP Q I TPDGR 474
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 319 I L LDL AI S QN SP NNQINNTMVT ID KQ EIKTQVL AKH GET I VLGGI FQHLIAKGE DKVP L LG S IP VIKR LF SQSQDKIS KR 398
Cdd:COG4796 475 I I LDL DV S KD SP GETVAGGVPA ID TK EIKTQVL VEN GET V VLGGI YEQTESNSV DKVP F LG D IP LLGW LF KNTTKTDE KR 554
410
....*....|....
gi 544679899 399 EL V IF V TP Y IVK SE 412
Cdd:COG4796 555 EL L IF I TP R IVK DA 568
Name
Accession
Description
Interval
E-value
HofQ
COG4796 Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
13-412
1.41e-142
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443824 [Multi-domain]
Cd Length: 570
Bit Score: 418.10
E-value: 1.41e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 13 PVLANQQI SL SIRNA P TAEIISYL A EE TG K N IT ISD EIKDTKNF R VEKSHF D EI L NSLI K THQ L NLK K ENGIYYIH ---- 88
Cdd:COG4796 156 KGYTGEKL SL NFQDI P VRSVLQLI A DF TG L N LV ISD SVTGNITL R LKNVPW D QA L DIIL K AKG L DKR K NGNVLLVA paee 235
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 89 - Q A Q E HKQHTTA Q LVNA L PK L I T KT I K L H Y S KAS EVIES L TKGQ G N LLSE S G YLHF D D R S N SI IV K D SAASVKNFTQ LI E 167
Cdd:COG4796 236 l A A R E KLELEAK Q QIEE L EP L R T EY I Q L N Y A KAS DLAKL L KGQR G S LLSE R G SVTV D E R T N TL IV R D TPSKLEEIRR LI A 315
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 168 S LD K P TE Q IA IEARIV TI S SEHLQQ LGVRWG LFSP N E --- N HYKLA G N L E G NG ---- L TTNN LNVN F P V - NP SA S VA L QI 239
Cdd:COG4796 316 K LD I P VR Q VL IEARIV EA S DSFSRE LGVRWG GSGA N G tgn N RGGIG G S L N G TT agtp L LPDG LNVN L P A a NP AG S LG L TL 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 240 A AI - NS R V LDLEL T ALE S E NNI EII A SPR LL T T D KKP ASI K QGTEIPY AMY S KKEE i T DI EF R EAVL G LEVTP H I SKQNQ 318
Cdd:COG4796 396 A KL g GG R L LDLEL S ALE A E GKG EII S SPR VI T A D QQE ASI E QGTEIPY QES S SSGA - T SV EF K EAVL S LEVTP Q I TPDGR 474
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 319 I L LDL AI S QN SP NNQINNTMVT ID KQ EIKTQVL AKH GET I VLGGI FQHLIAKGE DKVP L LG S IP VIKR LF SQSQDKIS KR 398
Cdd:COG4796 475 I I LDL DV S KD SP GETVAGGVPA ID TK EIKTQVL VEN GET V VLGGI YEQTESNSV DKVP F LG D IP LLGW LF KNTTKTDE KR 554
410
....*....|....
gi 544679899 399 EL V IF V TP Y IVK SE 412
Cdd:COG4796 555 EL L IF I TP R IVK DA 568
IV_pilus_PilQ
TIGR02515 type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
17-410
1.51e-125
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]
Pssm-ID: 274173 [Multi-domain]
Cd Length: 418
Bit Score: 369.34
E-value: 1.51e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 17 NQQ ISL SIRNA P TAEIISYL AE E TG K NI TI SD EIKDTKNF R VEKSHF D EI L NSLI K THQ L NLKKENG I Y YI H ----- Q AQ 91
Cdd:TIGR02515 1 GEK ISL NFQDI P VRTVLQVI AE F TG L NI VV SD SVQGNITL R LKNVPW D QA L DIVL K SKG L DKRRDGN I I YI A pldel A AQ 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 92 E HKQHTTAQLVNA L PK L I T KT I K L H Y S KAS E --- V IESL T K G Q G N LLS ES G YLHF D D R S N SI IV K D SAASVKNFTQ LI ES 168
Cdd:TIGR02515 81 E KDELEAKKQIEN L EP L Q T EL I Q L N Y A KAS D iak V LTGV T G G S G G LLS PR G SVTV D P R T N TL IV T D TPENLARIRK LI AE 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 169 LD K P TE Q IA IEARIV TISSEHLQQ LGVRWG LFSP N E N HYKL AG NLE GN -------- G L T T N ----- NLNVN FPV - NPS A S 234
Cdd:TIGR02515 161 LD I P VR Q VL IEARIV EATDSFSRE LGVRWG ITDK N G N GNGT AG GIG GN ngttatga G G T G N ppfgd NLNVN LAT a TTA A G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 235 VALQIAA I N S - R V LDLEL T ALESE NNI EII A SPR L LT TDK K P A S I K QGTEIPY AMY S K k EEI T DI EF R EAVL G LEVTP H I 313
Cdd:TIGR02515 241 ISFALGK I G S g R L LDLEL S ALESE GKG EII S SPR V LT ANN K E A K I E QGTEIPY QQT S S - SGA T SV EF K EAVL S LEVTP Q I 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 314 SKQNQ I LL DL AI S QN SP NN -- Q INNTMVT IDKQEI K TQVL A K H GET I V L GGI FQHLIAKG EDKVPLLG S IPV IKR LF SQS 391
Cdd:TIGR02515 320 TPDGR I IM DL LV S KD SP GV va Q AGGGVPA IDKQEI N TQVL V K N GET V V I GGI YEQTQTNS EDKVPLLG D IPV LGN LF KKT 399
410
....*....|....*....
gi 544679899 392 QDKIS K R EL V IF V TP Y IV K 410
Cdd:TIGR02515 400 GKSDE K S EL L IF I TP R IV N 418
hofQ
PRK13568 DNA uptake porin HofQ;
36-412
7.54e-124
DNA uptake porin HofQ;
Pssm-ID: 237430 [Multi-domain]
Cd Length: 381
Bit Score: 363.67
E-value: 7.54e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 36 LA EETGK N ITISDEIKDTKNF R VEKSHFDEI L NSLIKTHQ L NLKK E NGIY ------ Y I HQA Q EHKQHTT A QLVNA LP k L I 109
Cdd:PRK13568 5 LA DYQQL N LVTAPGVGGNLSL R LIEVPWEQA L AIILRMGK L SAER E GNVL mvfpeq E I QER Q QKTKQQA A PQEQM LP - L A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 110 TK T IK L H Y SK A S EV IE SL TKGQ G N LLS ES G YLHF D D R S N SIIVK D SA A SVKNFTQLIES LD K P TE Q IAIE A R IVTISSE H 189
Cdd:PRK13568 84 NL T LT L Q Y AD A E EV AD SL QSQR G G LLS PR G SVTA D K R T N TLLIR D TP A ALAQLKNWLIE LD L P LQ Q VQLA A H IVTISSE S 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 190 LQ Q LGVRWG LF spnenhykl A G NLEGNG L TT N NL NVN F P V - NP S AS VALQI A AINS R V LDLEL T ALE S EN NIE IIASPRL 268
Cdd:PRK13568 164 LQ E LGVRWG MG --------- E G KQGNTA L RI N DF NVN L P L p NP A AS AGFHL A RLGG R L LDLEL S ALE Q EN QVD IIASPRL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 269 L T TDKKP ASIKQGTEIPY AMY S K K EEI T D IEF R EAVLG L EVTP H I SKQNQ I L L D L A ISQN S P NNQ I --- NNT M VT IDKQE 345
Cdd:PRK13568 235 F T SHQQT ASIKQGTEIPY TVS S G K SGS T S IEF K EAVLG M EVTP K I LRNGR I T L K L K ISQN M P GRT I krg EGE M LA IDKQE 314
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544679899 346 I K TQV LA K H GETIVLGGIFQ HLIAKGED KVPLLG S IP VIKR LF S Q SQDKI S K RELVIF V TP YIVKSE 412
Cdd:PRK13568 315 I Q TQV TV K D GETIVLGGIFQ QQKRQSVN KVPLLG D IP LLGA LF R Q DTQQQ S R RELVIF I TP KLISAD 381
Secretin
pfam00263 Bacterial type II and III secretion system protein;
253-409
1.18e-50
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain]
Cd Length: 159
Bit Score: 168.08
E-value: 1.18e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 253 ALE SENNIE I IA SP R LLT T D KKP ASIK Q G T E I P YAM -- YSKKEEI T DI EF RE A V L G L E VTP HISKQNQ I L L DLAISQN SP 330
Cdd:pfam00263 1 ALE QNGKAK I LS SP S LLT L D NQE ASIK V G Q E V P VPT ts TTGGTTT T TV EF KD A G L S L K VTP QVTPDGT I T L KINPEVS SP 80
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544679899 331 NNQIN N TMV TI DKQ EI K T Q V LA K H G E T I V L GG IF Q HLIAKG E D KVPLLG S IP VIKR LF SQSQDKIS K R EL V IF V TP Y IV 409
Cdd:pfam00263 81 DGNGG N GVP TI NTR EI S T T V RV K D G Q T V V I GG LI Q EEDSET E S KVPLLG D IP LLGA LF RSTSKSKE K T EL L IF I TP R IV 159
Name
Accession
Description
Interval
E-value
HofQ
COG4796 Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
13-412
1.41e-142
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443824 [Multi-domain]
Cd Length: 570
Bit Score: 418.10
E-value: 1.41e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 13 PVLANQQI SL SIRNA P TAEIISYL A EE TG K N IT ISD EIKDTKNF R VEKSHF D EI L NSLI K THQ L NLK K ENGIYYIH ---- 88
Cdd:COG4796 156 KGYTGEKL SL NFQDI P VRSVLQLI A DF TG L N LV ISD SVTGNITL R LKNVPW D QA L DIIL K AKG L DKR K NGNVLLVA paee 235
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 89 - Q A Q E HKQHTTA Q LVNA L PK L I T KT I K L H Y S KAS EVIES L TKGQ G N LLSE S G YLHF D D R S N SI IV K D SAASVKNFTQ LI E 167
Cdd:COG4796 236 l A A R E KLELEAK Q QIEE L EP L R T EY I Q L N Y A KAS DLAKL L KGQR G S LLSE R G SVTV D E R T N TL IV R D TPSKLEEIRR LI A 315
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 168 S LD K P TE Q IA IEARIV TI S SEHLQQ LGVRWG LFSP N E --- N HYKLA G N L E G NG ---- L TTNN LNVN F P V - NP SA S VA L QI 239
Cdd:COG4796 316 K LD I P VR Q VL IEARIV EA S DSFSRE LGVRWG GSGA N G tgn N RGGIG G S L N G TT agtp L LPDG LNVN L P A a NP AG S LG L TL 395
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 240 A AI - NS R V LDLEL T ALE S E NNI EII A SPR LL T T D KKP ASI K QGTEIPY AMY S KKEE i T DI EF R EAVL G LEVTP H I SKQNQ 318
Cdd:COG4796 396 A KL g GG R L LDLEL S ALE A E GKG EII S SPR VI T A D QQE ASI E QGTEIPY QES S SSGA - T SV EF K EAVL S LEVTP Q I TPDGR 474
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 319 I L LDL AI S QN SP NNQINNTMVT ID KQ EIKTQVL AKH GET I VLGGI FQHLIAKGE DKVP L LG S IP VIKR LF SQSQDKIS KR 398
Cdd:COG4796 475 I I LDL DV S KD SP GETVAGGVPA ID TK EIKTQVL VEN GET V VLGGI YEQTESNSV DKVP F LG D IP LLGW LF KNTTKTDE KR 554
410
....*....|....
gi 544679899 399 EL V IF V TP Y IVK SE 412
Cdd:COG4796 555 EL L IF I TP R IVK DA 568
IV_pilus_PilQ
TIGR02515 type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
17-410
1.51e-125
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]
Pssm-ID: 274173 [Multi-domain]
Cd Length: 418
Bit Score: 369.34
E-value: 1.51e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 17 NQQ ISL SIRNA P TAEIISYL AE E TG K NI TI SD EIKDTKNF R VEKSHF D EI L NSLI K THQ L NLKKENG I Y YI H ----- Q AQ 91
Cdd:TIGR02515 1 GEK ISL NFQDI P VRTVLQVI AE F TG L NI VV SD SVQGNITL R LKNVPW D QA L DIVL K SKG L DKRRDGN I I YI A pldel A AQ 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 92 E HKQHTTAQLVNA L PK L I T KT I K L H Y S KAS E --- V IESL T K G Q G N LLS ES G YLHF D D R S N SI IV K D SAASVKNFTQ LI ES 168
Cdd:TIGR02515 81 E KDELEAKKQIEN L EP L Q T EL I Q L N Y A KAS D iak V LTGV T G G S G G LLS PR G SVTV D P R T N TL IV T D TPENLARIRK LI AE 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 169 LD K P TE Q IA IEARIV TISSEHLQQ LGVRWG LFSP N E N HYKL AG NLE GN -------- G L T T N ----- NLNVN FPV - NPS A S 234
Cdd:TIGR02515 161 LD I P VR Q VL IEARIV EATDSFSRE LGVRWG ITDK N G N GNGT AG GIG GN ngttatga G G T G N ppfgd NLNVN LAT a TTA A G 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 235 VALQIAA I N S - R V LDLEL T ALESE NNI EII A SPR L LT TDK K P A S I K QGTEIPY AMY S K k EEI T DI EF R EAVL G LEVTP H I 313
Cdd:TIGR02515 241 ISFALGK I G S g R L LDLEL S ALESE GKG EII S SPR V LT ANN K E A K I E QGTEIPY QQT S S - SGA T SV EF K EAVL S LEVTP Q I 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 314 SKQNQ I LL DL AI S QN SP NN -- Q INNTMVT IDKQEI K TQVL A K H GET I V L GGI FQHLIAKG EDKVPLLG S IPV IKR LF SQS 391
Cdd:TIGR02515 320 TPDGR I IM DL LV S KD SP GV va Q AGGGVPA IDKQEI N TQVL V K N GET V V I GGI YEQTQTNS EDKVPLLG D IPV LGN LF KKT 399
410
....*....|....*....
gi 544679899 392 QDKIS K R EL V IF V TP Y IV K 410
Cdd:TIGR02515 400 GKSDE K S EL L IF I TP R IV N 418
hofQ
PRK13568 DNA uptake porin HofQ;
36-412
7.54e-124
DNA uptake porin HofQ;
Pssm-ID: 237430 [Multi-domain]
Cd Length: 381
Bit Score: 363.67
E-value: 7.54e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 36 LA EETGK N ITISDEIKDTKNF R VEKSHFDEI L NSLIKTHQ L NLKK E NGIY ------ Y I HQA Q EHKQHTT A QLVNA LP k L I 109
Cdd:PRK13568 5 LA DYQQL N LVTAPGVGGNLSL R LIEVPWEQA L AIILRMGK L SAER E GNVL mvfpeq E I QER Q QKTKQQA A PQEQM LP - L A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 110 TK T IK L H Y SK A S EV IE SL TKGQ G N LLS ES G YLHF D D R S N SIIVK D SA A SVKNFTQLIES LD K P TE Q IAIE A R IVTISSE H 189
Cdd:PRK13568 84 NL T LT L Q Y AD A E EV AD SL QSQR G G LLS PR G SVTA D K R T N TLLIR D TP A ALAQLKNWLIE LD L P LQ Q VQLA A H IVTISSE S 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 190 LQ Q LGVRWG LF spnenhykl A G NLEGNG L TT N NL NVN F P V - NP S AS VALQI A AINS R V LDLEL T ALE S EN NIE IIASPRL 268
Cdd:PRK13568 164 LQ E LGVRWG MG --------- E G KQGNTA L RI N DF NVN L P L p NP A AS AGFHL A RLGG R L LDLEL S ALE Q EN QVD IIASPRL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 269 L T TDKKP ASIKQGTEIPY AMY S K K EEI T D IEF R EAVLG L EVTP H I SKQNQ I L L D L A ISQN S P NNQ I --- NNT M VT IDKQE 345
Cdd:PRK13568 235 F T SHQQT ASIKQGTEIPY TVS S G K SGS T S IEF K EAVLG M EVTP K I LRNGR I T L K L K ISQN M P GRT I krg EGE M LA IDKQE 314
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544679899 346 I K TQV LA K H GETIVLGGIFQ HLIAKGED KVPLLG S IP VIKR LF S Q SQDKI S K RELVIF V TP YIVKSE 412
Cdd:PRK13568 315 I Q TQV TV K D GETIVLGGIFQ QQKRQSVN KVPLLG D IP LLGA LF R Q DTQQQ S R RELVIF I TP KLISAD 381
hofQ
PRK10560 outer membrane porin HofQ; Provisional
26-412
2.08e-93
outer membrane porin HofQ; Provisional
Pssm-ID: 182549 [Multi-domain]
Cd Length: 386
Bit Score: 286.33
E-value: 2.08e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 26 NA P T A EIISY LAE ETGK N ITI S DEIKD T KNFRVEKSHFDEI L NSLI K THQ L N L KK E NG I YYI H QAQEHKQHTT ------ A 99
Cdd:PRK10560 4 DV P V A QVLQA LAE QEKL N LVV S PDVSG T VSLHLTDVPWKQA L QTVV K SAG L I L RQ E GN I LSV H SQAWQNENIA rqeaeq A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 100 QLVNA LP k L ITKT I K L H Y SK A S E vies L T K GQGN LLS ES G YLHF D D R S N SIIVK D SAASVKNFT Q LIESL D K P TE Q IAIE 179
Cdd:PRK10560 84 RAQAN LP - L ENRS I T L Q Y AD A G E ---- L A K AGEK LLS AK G SMTV D K R T N RLLLR D NKTALSALE Q WVAQM D L P VG Q VELA 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 180 A R IVTI SSEH L QQ LGV R W G L FSP nenhy KL AG NLEGNGLTTNN L N V N fpv NPSAS V ALQ I AA IN S R V LDLEL T ALE SENN 259
Cdd:PRK10560 159 A H IVTI NEKS L RE LGV K W T L ADA ----- QQ AG GVGQVTTLGSD L S V A --- TATTR V GFN I GR IN G R L LDLEL S ALE QKQQ 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 260 IE IIASPRLL TTDKK PASIKQG T EIPY AMY S KKEEI T DI EF R EAVLG L EVTP HISKQNQ I L L D L A ISQN S P NN --- Q INN 336
Cdd:PRK10560 231 LD IIASPRLL ASHLQ PASIKQG S EIPY QVS S GESGA T SV EF K EAVLG M EVTP TVLQKGR I R L K L H ISQN V P GQ vlq Q ADG 310
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544679899 337 TMVT IDKQEI K TQV LA K H GET IV LGGIF QHLIAK G E D K VPLLG S IP VIKR LF SQSQDKISK RELV I F V TP YI V K SE 412
Cdd:PRK10560 311 EVLA IDKQEI E TQV EV K S GET LA LGGIF SRKNKS G Q D S VPLLG D IP WLGQ LF RHDGKEDER RELV V F I TP RL V S SE 386
PulD
COG1450 Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
117-412
9.03e-67
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 441059 [Multi-domain]
Cd Length: 333
Bit Score: 215.94
E-value: 9.03e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 117 Y SK A SEVIES L T kgqg N LL SES -- GYLHF D D R S NS I IV KDSAASVKNFTQ LIE S LD K P TE Q IA IEA R IV TI S SEH L QQ LG 194
Cdd:COG1450 24 Y AD A EDLAKV L R ---- S LL GGA ag VSVVA D P R T NS L IV RATPEQLREIEE LIE Q LD V P RR Q VL IEA K IV EV S LSD L RE LG 99
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 195 VR W GL fspnenhyk L A GN LE G NGLTTNNLNVNFPVNP S ASVA L QIAAINSRVLDLE L T ALES ENNIEIIA SP RL LT TDKK 274
Cdd:COG1450 100 ID W SA --------- L G GN GG G VNFGGTGSLGSLAAAG S LGGG L NLGLLGGGNFGAL L N ALES NGDANVLS SP SI LT LNNQ 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 275 P A S IK Q G TEI PY ----- AMY S KKEEI T D IE FREAVLG L E VTP H I SKQNQIL LD LAI --- S QNSPNNQIN N TMV TI D K Q EI 346
Cdd:COG1450 171 E A V IK V G QTV PY vtgst TTS S TGNPT T T IE YVDVGIT L K VTP Q I NEDGTVT LD INP evs S VTGSTTGGG N GLP TI N K R EI 250
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544679899 347 K T Q V LA K H G E T I VLGG IFQHLIAKG E D KVPLLG S IP VIK RLF SQSQDKIS K R ELVIF V TP Y I VKSE 412
Cdd:COG1450 251 S T T V RV K D G Q T V VLGG LIRDEESES E S KVPLLG D IP LLG RLF RSTSKSKE K T ELVIF I TP T I IRDG 316
IV
PHA00019 phage assembly protein
2-412
3.92e-56
phage assembly protein
Pssm-ID: 222772 [Multi-domain]
Cd Length: 428
Bit Score: 190.79
E-value: 3.92e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 2 RY LFLL F F AT F PVL A nqq ISLSIR N A P TA E II S YLAEE TGK NITISDEI K DTKNFR --- V EKSHFDEILN S LIKTHQLN L 78
Cdd:PHA00019 9 ML LFLL M F LS F SSF A --- LPVELN N S P IR E FV S WYSQQ TGK SVVLGPDV K GNVTVY sad V NPANLPQFFD S VLRANGFD L 85
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 79 KKENGIYY I H Q A -- QE HKQHTTAQLVNALPK -------------- LI TK T IKLHYSK AS EVI --- ESLT K GQ G nll SES G 139
Cdd:PHA00019 86 VAGGPAVV I K Q N pn QE DYADDLRDSRDDVFY dnsvpsgapevpnd LI VR T FNINNVR AS DLL plv KIFV K SN G --- APG G 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 140 YLHFDDRS NS II V KD SA ASVKNFTQL I ESL D K P TE Q IA IEA R I VTI S SEHLQQ L GVRW GL F S PN enhy K L AG NLEGNG LT 219
Cdd:PHA00019 163 SVTDLPGT NS LV V SG SA SQLPALADF I SAI D V P RR Q VL IEA L I FET S LGDGVD L SFAA GL A S GG ---- K V AG GFNTAR LT 238
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 220 T N n L N vnfpvnp SA SVALQ I aa I N SR VL D L ELT ALE SEN N IEIIAS PR L LT TDKKPAS I KQ G TEI P YAMYSKKE E ITD -- 297
Cdd:PHA00019 239 T V - L S ------- SA GGSFG I -- F N GN VL G L SVK ALE NSS N SRVLSR PR I LT LSGQSGY I SV G QNV P FVTGRVTG E AAN vn 308
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 298 ----- IE FREAVLG LEVTP HISKQN Q IL LD LAISQN S PNNQINNTMVTIDKQEIK T Q V LA K H G E T IV LGG IFQHLIAK G E 372
Cdd:PHA00019 309 npfqt IE RKDVGVS LEVTP VVMGDG Q LV LD IDTKAD S LSDSTIASDIITNQRSLQ T T V QV K D G Q T LL LGG LISSNNTD G D 388
410 420 430 440
....*....|....*....|....*....|....*....|
gi 544679899 373 DK VP L L GS IP V I KR LF SQSQ D KISK R E L VIFV T PYIV K SE 412
Cdd:PHA00019 389 SS VP F L SK IP L I GW LF RSKS D SNEQ R T L YVLL T ARVI K AL 428
Secretin
pfam00263 Bacterial type II and III secretion system protein;
253-409
1.18e-50
Bacterial type II and III secretion system protein;
Pssm-ID: 459738 [Multi-domain]
Cd Length: 159
Bit Score: 168.08
E-value: 1.18e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 253 ALE SENNIE I IA SP R LLT T D KKP ASIK Q G T E I P YAM -- YSKKEEI T DI EF RE A V L G L E VTP HISKQNQ I L L DLAISQN SP 330
Cdd:pfam00263 1 ALE QNGKAK I LS SP S LLT L D NQE ASIK V G Q E V P VPT ts TTGGTTT T TV EF KD A G L S L K VTP QVTPDGT I T L KINPEVS SP 80
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544679899 331 NNQIN N TMV TI DKQ EI K T Q V LA K H G E T I V L GG IF Q HLIAKG E D KVPLLG S IP VIKR LF SQSQDKIS K R EL V IF V TP Y IV 409
Cdd:pfam00263 81 DGNGG N GVP TI NTR EI S T T V RV K D G Q T V V I GG LI Q EEDSET E S KVPLLG D IP LLGA LF RSTSKSKE K T EL L IF I TP R IV 159
type_II_gspD
TIGR02517 type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
138-412
5.86e-47
type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274175 [Multi-domain]
Cd Length: 594
Bit Score: 169.87
E-value: 5.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 138 S GYLHF D DRS NS I I VKD S AASV KN FTQL I ES LD KPTE Q IAI EA R IV TI S SEHLQQ LGV R W GLFSPNENHYKLA G NLEGNG 217
Cdd:TIGR02517 294 S VSGSA D KAT NS L I ITA S PQDY KN IRAV I KQ LD VRRA Q VLV EA I IV EV S LDDALE LGV Q W LIAGTGGGVNFST G SPNSGS 373
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 218 L TTNNLNV ---- NFPVNP ----- S ASVALQIAAINSRVLD L e L T AL ESENNIEIIAS P R LLT T D KKP A S I KQ G T E I P YAM 288
Cdd:TIGR02517 374 L LGASASA islg SAGIGL lvtss S TTSGVGGTGGGPNLGV L - L N AL KQDTGFNVLST P S LLT L D NQE A E I NV G Q E V P VLT 452
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 289 Y S KKEEITD -------- IEFREAVLG L E VTP H I SKQNQIL L DL -- AI S QNS P NNQINNTM - V T ID K Q EIKT Q VL AKH G E T 357
Cdd:TIGR02517 453 G S YNTGTGG tnanpfnt YQRKDVGIK L K VTP Q I NEGGTVR L EI yq EV S SVA P TTVGSAAS g P T FN K R EIKT V VL VDN G D T 532
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 544679899 358 I VLGG IF Q HLIAKGED KVPLLG S IPV IKR LF SQSQDKIS K RE L VI F V TP Y I VKSE 412
Cdd:TIGR02517 533 V VLGG LI Q DKTSESVT KVPLLG D IPV LGW LF RSTTTERT K TN L MV F I TP R I IRDP 587
CpaC
COG4964 Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
175-410
8.30e-35
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443990 [Multi-domain]
Cd Length: 456
Bit Score: 134.23
E-value: 8.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 175 Q IAIEA R IVTI S SEH L Q QLG VR W GLFSPN enhykla G NLEGNG LT TNN L NVNFPVNPSASVALQIAAIN S rv LDLE L T AL 254
Cdd:COG4964 176 Q VMLKV R VAEV S RSV L K QLG IN W SGLGSS ------- G GFSFGL LT GGL L SGLLGGATAGAFSGFGFGNA S -- ISAT L D AL 246
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 255 E SENNIEII A S P R L LTTDKKP AS IKQ G T E I P YAMYSKKEE IT d I E FR E AVLG L EV TP HISKQNQ I L L DL A -- I S QNS P N N 332
Cdd:COG4964 247 E QNGLARVL A E P N L TALSGET AS FLA G G E F P IPVAQGDGT IT - V E YK E FGVS L NF TP TVLSNGR I S L KV A pe V S ELD P S N 325
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 333 -- QI N NTMV - TIDKQEIK T Q V LAKH G ETIVLG G IFQHLIAKGED KVP L LG S IP VIKR LF SQSQDKISKR ELVI F VTPY I V 409
Cdd:COG4964 326 av TL N GITI p GLTTRRAE T T V ELRS G QSFAIA G LLSSNTRQNVS KVP G LG D IP ILGA LF RSRSFQRNET ELVI I VTPY L V 405
.
gi 544679899 410 K 410
Cdd:COG4964 406 K 406
PRK15346
PRK15346 EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
4-394
1.28e-21
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237950 [Multi-domain]
Cd Length: 499
Bit Score: 96.68
E-value: 1.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 4 L FL LFFA T FPVL A NQQ I S ------- LSI R NA P T AE IISY L AEET G KNIT IS D EI K DT KNFRVEKSHFDE ILN S L IKTHQ L 76
Cdd:PRK15346 8 I FL FLLN T AKFA A SKS I P wqgnpff IYS R GM P L AE VLHD L GANY G IPVV IS P EI N DT FSGKIRDGPPVK ILN E L ARRYH L 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 77 NLKKENGIY Y IHQ A Q E H K Q ---------------------------------- H T T A QL V NAL P ---------------- 106
Cdd:PRK15346 88 TWYYDGNTL Y VYK A S E I K R qvitptylsagrlikylqsqgilngkscevkait G T N A LE V SGV P eciervtqlakvldeq 167
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 107 ------- K LIT K TIK L H Y SK A SE ----------------- V IESLTK G QGNL L SE S G ------------ YLHF D D R S N SI 150
Cdd:PRK15346 168 aqkrkqn K ETV K VFP L K Y AS A TD ttyqyrdqnvvvpgvvs V LREMAQ G NSLP L PG S N avegspasqalp VFSA D P R Q N AV 247
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 151 IV K D S AA SVKNFTQ LI ES LD KPTEQ I A I EAR I VTISSEHLQ QLG VR W GL fspnenhykl AGN L E G NGLTT N NLNVNFPVN 230
Cdd:PRK15346 248 IV R D R AA NMAIYRS LI TQ LD QRPQM I E I SVS I IDVDAGDIN QLG ID W SA ---------- SAS L G G GKISF N SGFADGNAS 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 231 PSAS V alq I A ai N SRVLDLE L T ALE SENNIE I IAS P RLL T TDKKP A SIKQGT eipy AM Y S K -- K E EITDI E FREAVLG L E 308
Cdd:PRK15346 318 GFST V --- I S -- N TGNFMVR L N ALE KNSKAK I LSQ P SVV T LNNIQ A VLDKNV ---- TF Y T K lq G E KVAKL E SITTGSL L R 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 309 VTP HI --- SKQNQIL L D L A I S -- Q N S PNNQINNTMVTIDKQ EI K TQ VLA K H G ETIV LGG IF Q HLIAKGED K V PLLG S IP V 383
Cdd:PRK15346 389 VTP RL idd NGTQKVM L N L N I Q dg Q Q S ATQSETDPLPEVQNS EI A TQ ATL K A G QSLL LGG FI Q DKQIESQN K I PLLG D IP L 468
490
....*....|.
gi 544679899 384 I KR LF SQSQDK 394
Cdd:PRK15346 469 I GG LF RSTDKQ 479
PRK15339
PRK15339 EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
147-406
7.84e-15
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
Pssm-ID: 237948 [Multi-domain]
Cd Length: 559
Bit Score: 76.35
E-value: 7.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 147 S NS II VK DS A AS V KNFTQ L IES LD KPTEQIAIEAR I VTISSEH L Q QLGV R W glfspnenhyklagnl E G NGLTTNN L N V N 226
Cdd:PRK15339 274 T NS LL VK GT A EQ V HFIEM L VKA LD VAKRHVELSLW I IDLDKSD L E QLGV N W ---------------- S G SITIGDK L G V S 337
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 227 F pv N P S ASVA L Q ---- IAA IN srvldlelt ALE SENNIEIIAS P RL LT TDKK PA SIKQGT eipy AM Y S K KEEITDIEFRE 302
Cdd:PRK15339 338 L -- N Q S SIST L D gsrf IAA VM --------- ALE QKKKANVVSR P VV LT QENI PA IFDNNR ---- TF Y T K LVGERNVALEH 402
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544679899 303 AVL G -- LE V T P HI S KQN QI LLD L A I --- SQNS P NNQINNT --- MVTIDKQE I K T QVLAKH G ETIVL GG IFQHLIAKGEDK 374
Cdd:PRK15339 403 VTY G tm IS V L P RF S ADG QI EMS L D I edg NEKT P QSDTTTS vda LPEVGRTL I S T IARVPQ G KSLLI GG YTRDANTDEVQS 482
250 260 270
....*....|....*....|....*....|..
gi 544679899 375 V P L LGS I P V I KR LF SQ S QDKI S KREL V IFVT P 406
Cdd:PRK15339 483 I P F LGS L P L I GS LF RY S SKNK S NIVR V FLIE P 514
Secretin_N
pfam03958 Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
110-175
5.77e-11
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.
Pssm-ID: 461109 [Multi-domain]
Cd Length: 68
Bit Score: 58.00
E-value: 5.77e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544679899 110 T KT I K L H Y SK A SEVIES L TK -- G QGN LLS ES G YLHF D D R S NS I IV KDSAAS V KNFT QLI ES LD K P TE Q 175
Cdd:pfam03958 1 T RV I P L K Y AS A EDLASA L RS ll G GSG LLS KR G SVVA D P R T NS L IV SGPPEY V ELVR QLI KQ LD V P RA Q 68
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
