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Conserved domains on  [gi|544681352|ref|WP_021113429|]
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hypothetical protein [Glaesserella parasuis]

Protein Classification

type IV pilus biogenesis protein PilM( domain architecture ID 1004113)

type IV pilus biogenesis protein PilM binds to PilB, PilT, and possibly PilC and that binding of PilN may modulate the interaction of PilM with PilB, PilT, and/or PilC

Gene Ontology:  GO:0043683|GO:0046872|GO:0005524
PubMed:  28496159

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilM super family cl34852
Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];
73-153 5.52e-04

Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];


The actual alignment was detected with superfamily member COG4972:

Pssm-ID: 443997 [Multi-domain]  Cd Length: 294  Bit Score: 40.22  E-value: 5.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544681352  73 KTLILPELHshLKQAEQIIRV-LKQSLPLALSEVNIDYHITPLAESHLCQLN--LYALRKSN-----------SFDPTAI 138
Cdd:COG4972   82 RKITLPALS--EKELEEAIEFeAEQYIPFPLEEVVLDFQVLGPSEEGPEKVEvlLVAARKEVvedyvelleaaGLKPVVV 159

                         90
                 ....*....|....*
gi 544681352 139 lDCELYCLLRAVGFL 153
Cdd:COG4972  160 -DVEPFALLRALELL 173
 
Name Accession Description Interval E-value
PilM COG4972
Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];
73-153 5.52e-04

Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];


Pssm-ID: 443997 [Multi-domain]  Cd Length: 294  Bit Score: 40.22  E-value: 5.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544681352  73 KTLILPELHshLKQAEQIIRV-LKQSLPLALSEVNIDYHITPLAESHLCQLN--LYALRKSN-----------SFDPTAI 138
Cdd:COG4972   82 RKITLPALS--EKELEEAIEFeAEQYIPFPLEEVVLDFQVLGPSEEGPEKVEvlLVAARKEVvedyvelleaaGLKPVVV 159

                         90
                 ....*....|....*
gi 544681352 139 lDCELYCLLRAVGFL 153
Cdd:COG4972  160 -DVEPFALLRALELL 173
 
Name Accession Description Interval E-value
PilM COG4972
Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];
73-153 5.52e-04

Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures];


Pssm-ID: 443997 [Multi-domain]  Cd Length: 294  Bit Score: 40.22  E-value: 5.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544681352  73 KTLILPELHshLKQAEQIIRV-LKQSLPLALSEVNIDYHITPLAESHLCQLN--LYALRKSN-----------SFDPTAI 138
Cdd:COG4972   82 RKITLPALS--EKELEEAIEFeAEQYIPFPLEEVVLDFQVLGPSEEGPEKVEvlLVAARKEVvedyvelleaaGLKPVVV 159

                         90
                 ....*....|....*
gi 544681352 139 lDCELYCLLRAVGFL 153
Cdd:COG4972  160 -DVEPFALLRALELL 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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