|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-446 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 669.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 9 WSDCLTHLQAKVSPTDYSTWLRPLQA-SATSSELVLYAHNQFVATWVKDKFLGEIVTLARSLSKNEqLQVEIRVGIKPAE 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 88 QAVTSVAPTATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGeSHCNPFSLYGGTGLGKTHLLHAIG 167
Cdd:TIGR00362 80 LEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 168 NEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIV 247
Cdd:TIGR00362 159 NEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 248 TSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAW 327
Cdd:TIGR00362 239 TSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAY 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 328 SNFTSRQITIDAVREALKDLIASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIG 407
Cdd:TIGR00362 319 ASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIG 398
|
410 420 430
....*....|....*....|....*....|....*....
gi 544682295 408 REFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKL 446
Cdd:TIGR00362 399 KAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-448 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 654.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 4 TVSSLWSDCLTHLQAKVSPTDYSTWLRPLQ-ASATSSELVLYAHNQFVATWVKDKFLGEIVTLARslskneqlqveirvg 82
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 83 ikpaeqavtsvaptatppqetqatalrsgLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHL 162
Cdd:PRK00149 66 -----------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAY-NPLFIYGGVGLGKTHL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 163 LHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERS 242
Cdd:PRK00149 116 LHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 243 KQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALN 322
Cdd:PRK00149 196 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 323 RAIAWSNFTSRQITIDAVREALKDLIASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHS 402
Cdd:PRK00149 276 RLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLS 355
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 544682295 403 LPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLSS 448
Cdd:PRK00149 356 LPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
116-415 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 518.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 116 LTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAI 195
Cdd:COG0593 5 YTFDNFVVGPSNRLAHAAALAVAEWPGKAY-NPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFINAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 196 KANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 275
Cdd:COG0593 84 RNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVVDI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 276 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALKDLIASYDHLI 355
Cdd:COG0593 164 QPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKKEI 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 356 TIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDH 415
Cdd:COG0593 244 TIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
112-331 |
1.12e-114 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 335.45 E-value: 1.12e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 112 LTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDM 191
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAY-NPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 192 VKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGV 271
Cdd:pfam00308 80 VDAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 272 NAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFT 331
Cdd:pfam00308 160 VTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
357-446 |
2.99e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 146.89 E-value: 2.99e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 357 IENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQ 436
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 544682295 437 EDYTNLTRKL 446
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
356-424 |
3.21e-38 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 133.02 E-value: 3.21e-38
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 356 TIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKT 424
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-446 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 669.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 9 WSDCLTHLQAKVSPTDYSTWLRPLQA-SATSSELVLYAHNQFVATWVKDKFLGEIVTLARSLSKNEqLQVEIRVGIKPAE 87
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 88 QAVTSVAPTATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGeSHCNPFSLYGGTGLGKTHLLHAIG 167
Cdd:TIGR00362 80 LEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 168 NEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIV 247
Cdd:TIGR00362 159 NEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 248 TSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAW 327
Cdd:TIGR00362 239 TSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAY 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 328 SNFTSRQITIDAVREALKDLIASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIG 407
Cdd:TIGR00362 319 ASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIG 398
|
410 420 430
....*....|....*....|....*....|....*....
gi 544682295 408 REFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKL 446
Cdd:TIGR00362 399 KAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-448 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 654.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 4 TVSSLWSDCLTHLQAKVSPTDYSTWLRPLQ-ASATSSELVLYAHNQFVATWVKDKFLGEIVTLARslskneqlqveirvg 82
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 83 ikpaeqavtsvaptatppqetqatalrsgLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHL 162
Cdd:PRK00149 66 -----------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAY-NPLFIYGGVGLGKTHL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 163 LHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERS 242
Cdd:PRK00149 116 LHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 243 KQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALN 322
Cdd:PRK00149 196 KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 323 RAIAWSNFTSRQITIDAVREALKDLIASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHS 402
Cdd:PRK00149 276 RLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLS 355
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 544682295 403 LPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLSS 448
Cdd:PRK00149 356 LPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
116-415 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 518.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 116 LTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAI 195
Cdd:COG0593 5 YTFDNFVVGPSNRLAHAAALAVAEWPGKAY-NPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFINAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 196 KANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAI 275
Cdd:COG0593 84 RNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVVDI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 276 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALKDLIASYDHLI 355
Cdd:COG0593 164 QPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKKEI 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 356 TIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDH 415
Cdd:COG0593 244 TIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
112-331 |
1.12e-114 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 335.45 E-value: 1.12e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 112 LTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDM 191
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAY-NPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 192 VKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGV 271
Cdd:pfam00308 80 VDAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 272 NAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFT 331
Cdd:pfam00308 160 VTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
81-446 |
3.07e-109 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 335.26 E-value: 3.07e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 81 VGIKPAEQAVTSVAPTA-TPPQETQATALRSG-----LTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHcNPFSLYGG 154
Cdd:PRK14086 244 GPPERDDAPVVPIRPSApGPLAAQPAPAPGPGeptarLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAY-NPLFIYGE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 155 TGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHT 234
Cdd:PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHT 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 235 FNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNV 314
Cdd:PRK14086 403 FNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNI 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 315 RELEGALNRAIAWSNFTSRQITIDAVREALKDLIASYDHL-ITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMA 393
Cdd:PRK14086 483 RELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMY 562
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 544682295 394 LAKELTNHSLPEIGREFgGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKL 446
Cdd:PRK14086 563 LCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 614
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
9-448 |
2.66e-73 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 237.04 E-value: 2.66e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 9 WSDCLTHLQAKVSPTDYSTWLRPLQ-ASATSSELVLYAHNQFVATWVKDKFLGEIVTlarSLSKNEQLQVEIRVgikpae 87
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKvLCFDACNLYLEAKDSFQVTWFEEHIRHKVKA---SLVNNNGKPIRVHV------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 88 qavtSVAPTATP-PQETQATALRSG--------LTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHC---NPFSLYGGT 155
Cdd:PRK12422 75 ----TSLDKSTPfKKEKQIQQEKTAyftmkygeLDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGfpfNPIYLFGPE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 156 GLGKTHLLHAIGNEILKQNpnARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTF 235
Cdd:PRK12422 151 GSGKTHLMQAAVHALRESG--GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTF 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 236 NSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVR 315
Cdd:PRK12422 229 NSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVK 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 316 ELEGALN---RAIAWSNFTSRQITIDAVREALKDLI-ASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMA 391
Cdd:PRK12422 309 SLLHALTllaKRVAYKKLSHQLLYVDDIKALLHDVLeAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVA 388
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 544682295 392 MALAKELTNHSLPEIGREFgGRDHTTVMHACKTINE-LRDTDNSIQEDYTNLTRKLSS 448
Cdd:PRK12422 389 MYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
357-446 |
2.99e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 146.89 E-value: 2.99e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 357 IENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQ 436
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 544682295 437 EDYTNLTRKL 446
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
357-425 |
1.22e-40 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 139.46 E-value: 1.22e-40
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 357 IENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKTI 425
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
356-424 |
3.21e-38 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 133.02 E-value: 3.21e-38
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 356 TIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKT 424
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
107-345 |
3.11e-32 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 122.30 E-value: 3.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 107 ALRSGLTETLTFDNFVQGkSNQLAKAVAQQVASNPGESHcnpFSLYGGTGLGKTHLLHAIGNEILKQNpnARVVYIHSER 186
Cdd:TIGR03420 3 PLDVGLPDDPTFDNFYAG-GNAELLAALRQLAAGKGDRF---LYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 187 FVQDMVKAIKAntIENFkkfyrslDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSR 266
Cdd:TIGR03420 77 LAQADPEVLEG--LEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 267 LSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALK 345
Cdd:TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
127-270 |
1.25e-18 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 82.19 E-value: 1.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 127 NQLAKAVAQQVASNPgeSHCNPFsLYGGTGLGKTHLLHAIGNEILKqnPNARVVYIHSERFVQDMVKAIKANTIENFKKF 206
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLL-LYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 544682295 207 ----YRSLDVLMIDDIQFFAN-KEATQEEFFHTFNSL---FERSKQIIVTSDVFP-KNIENIEERIRSRLSWG 270
Cdd:cd00009 78 elaeKAKPGVLFIDEIDSLSRgAQNALLRVLETLNDLridRENVRVIGATNRPLLgDLDRALYDRLDIRIVIP 150
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
117-345 |
1.33e-18 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 84.73 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 117 TFDNFVQGKSNQLAKAVaQQVASNPGESHcnpFSLYGGTGLGKTHLLHAIGNEILKQNpnARVVYIHSER---FVQDMVK 193
Cdd:PRK08084 20 TFASFYPGDNDSLLAAL-QNALRQEHSGY---IYLWSREGAGRSHLLHAACAELSQRG--RAVGYVPLDKrawFVPEVLE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 194 AIKantienfkkfyrSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSK-QIIVTSDVFPKNIENIEERIRSRLSWGVN 272
Cdd:PRK08084 94 GME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPDLASRLDWGQI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 544682295 273 AAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALK 345
Cdd:PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
117-346 |
2.63e-18 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 83.49 E-value: 2.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 117 TFDNFVQGKSNQLAKAVAQQVASNPGESHcnpFSLYGGTGLGKTHLLHAIGNEILKQNPNARvvYIhserfvqdmvkaiK 196
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF---FYLWGEAGSGRSHLLQALVADASYGGRNAR--YL-------------D 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 197 ANTIENFKKFYRSLDVLMIDDIQffANKEATQEEFFHTFNSLFERSKQIIVTS-DVFPKNIEnIEERIRSRLSWGVNAAI 275
Cdd:PRK08903 78 AASPLLAFDFDPEAELYAVDDVE--RLDDAQQIALFNLFNRVRAHGQGALLVAgPAAPLALP-LREDLRTRLGWGLVYEL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 544682295 276 EPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALKD 346
Cdd:PRK08903 155 KPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
151-249 |
3.41e-16 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 77.90 E-value: 3.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKQNPnaRVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEE 230
Cdd:COG1484 104 LLGPPGTGKTHLAIALGHEACRAGY--RVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAEL 181
|
90
....*....|....*....
gi 544682295 231 FFHTFNSLFERsKQIIVTS 249
Cdd:COG1484 182 LFELISDRYER-RSTIITS 199
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
6-68 |
2.26e-12 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 61.91 E-value: 2.26e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544682295 6 SSLWSDCLTHLQAKVSPTDYSTWLRPLQASA--TSSELVLYAHNQFVATWVKDKFLGEIVTLARS 68
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVDldDGGSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
151-267 |
6.38e-12 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 66.46 E-value: 6.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKqnpNAR-VVYIHSERFVQDMvKAIKANTIENFKKFYRSL---DVLMIDDIQFFANKEA 226
Cdd:PRK06835 188 FYGNTGTGKTFLSNCIAKELLD---RGKsVIYRTADELIEIL-REIRFNNDKELEEVYDLLincDLLIIDDLGTEKITEF 263
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 544682295 227 TQEEFFHTFNSLFERSKQIIVTSDVFPKNIENI-EERIRSRL 267
Cdd:PRK06835 264 SKSELFNLINKRLLRQKKMIISTNLSLEELLKTySERISSRL 305
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
333-430 |
4.48e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 60.18 E-value: 4.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 333 RQITIDAVREALKDLIASYDHLitieniqktVAEYYNIKMADLKS-KSRTRSVARPRQMAMALAKELTNHSLPEIGREFG 411
Cdd:PRK06030 10 WHIAPDKRRERLIELCEAVIDL---------LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG 80
|
90
....*....|....*....
gi 544682295 412 gRDHTTVMHACKTINELRD 430
Cdd:PRK06030 81 -RDRTTVGHACHTVEDLRD 98
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
117-267 |
8.22e-10 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 59.26 E-value: 8.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 117 TFDNF-VQGKSNQ---LAKAVAQQVASNPGESHcnPFSLYGGTGLGKTHLLHAIGNEILKQnpNARVVYIHSERFVQDMV 192
Cdd:PRK08116 83 TFENFlFDKGSEKaykIARKYVKKFEEMKKENV--GLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRIK 158
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 193 KAIKANTIENFKKFYRSL---DVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIEN-IEERIRSRL 267
Cdd:PRK08116 159 STYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNqYGKRIYDRI 237
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
151-266 |
7.06e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 7.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKqnPNARVVYIHSERFVQDMVKAIKANTIENFKKF---------------YRSLDVLMI 215
Cdd:smart00382 7 IVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPDVLIL 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 544682295 216 DDIQFFANKEATQEEFFHTFNSLF-----ERSKQIIVTSDVFPKNIENIEERIRSR 266
Cdd:smart00382 85 DEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
151-218 |
1.47e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 52.95 E-value: 1.47e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKQnpNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDI 218
Cdd:PRK08939 161 LYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
110-267 |
8.55e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 50.16 E-value: 8.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 110 SGLTET---LTFDNFVQGKSNQLAKAVAQ------QVASNPGESHCNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVV 180
Cdd:PRK06921 72 SEITEAfrkLTFKNFKTEGKPQAIKDAYEcaveyvKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 181 YIHSERF--VQDMVKAIKANtIENFKKfyrsLDVLMIDDIQFFANKE--ATQ---EEFFHTFNSLFERSKQIIVTSDVFP 253
Cdd:PRK06921 152 FPFVEGFgdLKDDFDLLEAK-LNRMKK----VEVLFIDDLFKPVNGKprATEwqiEQMYSVLNYRYLNHKPILISSELTI 226
|
170
....*....|....
gi 544682295 254 KNIENIEERIRSRL 267
Cdd:PRK06921 227 DELLDIDEALGSRI 240
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
99-214 |
6.34e-06 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 47.81 E-value: 6.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 99 PPQETQAT-ALRSGLTETLTFDNFVQgksNQLAKAVAQQVASNPGESHCNPFSLyGGTGLGKTHLLHAIGNEILKQNPNA 177
Cdd:PRK13894 104 PPVVPAPTfAIRKKAVAIFTLDQYVE---RGIMTAAQREAIIAAVRAHRNILVI-GGTGSGKTTLVNAIINEMVIQDPTE 179
|
90 100 110
....*....|....*....|....*....|....*..
gi 544682295 178 RVVYIHSERFVQdmvkaikaNTIENFKKFYRSLDVLM 214
Cdd:PRK13894 180 RVFIIEDTGEIQ--------CAAENYVQYHTSIDVNM 208
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
2-80 |
2.03e-05 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 46.29 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 2 EQTVSSLWSDCLTHLQAKVSPTDYSTWLRPLQASATSSELVLYAHNQFVATWVKDKFLGEIVTLARSLSKNE-QLQVEIR 80
Cdd:PRK06672 188 QEESKTIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGNTyEIQFELK 267
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
189-345 |
2.80e-05 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 45.22 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 189 QDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFankeaTQEEFFHTFNSLFERSKQIIVTSDVFPKN--IENIEERIRSR 266
Cdd:PRK06620 65 QNLSNAYIIKDIFFNEEILEKYNAFIIEDIENW-----QEPALLHIFNIINEKQKYLLLTSSDKSRNftLPDLSSRIKSV 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544682295 267 LSWGVNaaiePPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALK 345
Cdd:PRK06620 140 LSILLN----SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
109-218 |
4.17e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.83 E-value: 4.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 109 RSG---LTETLTFDNF-VQGKSNQLAKAVAQQVASNPGeSHCNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYihs 184
Cdd:PRK12377 61 RSGiqpLHRKCSFANYqVQNDGQRYALSQAKSIADELM-TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT--- 136
|
90 100 110
....*....|....*....|....*....|....*....
gi 544682295 185 erfVQDMVKAIKA-----NTIENFKKFYRSLDVLMIDDI 218
Cdd:PRK12377 137 ---VPDVMSRLHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
104-218 |
5.92e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 41.29 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 104 QATALRSGLTE---TLTFDNF-VQGKSNQLAKAVAQQVASNPGESHCNpFSLYGGTGLGKTHLLHAIGNEILKQNPNARV 179
Cdd:PRK07952 54 QRTFNRSGIRPlhqNCSFENYrVECEGQMNALSKARQYVEEFDGNIAS-FIFSGKPGTGKNHLAAAICNELLLRGKSVLI 132
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 544682295 180 VYihserfVQDMVKAIKAN------TIENFKKFYRSLDVLMIDDI 218
Cdd:PRK07952 133 IT------VADIMSAMKDTfsnsetSEEQLLNDLSNVDLLVIDEI 171
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
151-358 |
6.36e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 42.20 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEIlkqnpNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSL-DVLMIDDIQFFANK--EAT 227
Cdd:TIGR01243 217 LYGPPGTGKTLLAKAVANEA-----GAYFISINGPEIMSKYYGESEERLREIFKEAEENApSIIFIDEIDAIAPKreEVT 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 228 QE-------EFFHTFNSLFERSKQIIVTSDVFPkniENIEERIRSRLSWGVNAAIEPPELETRVAILmkKAEERGIELSE 300
Cdd:TIGR01243 292 GEvekrvvaQLLTLMDGLKGRGRVIVIGATNRP---DALDPALRRPGRFDREIVIRVPDKRARKEIL--KVHTRNMPLAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 301 DVAF---------FLGQKLRTNVRELE-GALNRAIAWS--NFTSRQI----------TIDAVREALKDLIASYDHLITIE 358
Cdd:TIGR01243 367 DVDLdklaevthgFVGADLAALAKEAAmAALRRFIREGkiNFEAEEIpaevlkelkvTMKDFMEALKMVEPSAIREVLVE 446
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
151-355 |
6.80e-04 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 41.76 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKQNPNARVVYI----HSERF--VQDMVKAIKANTIEN----FKKFYRSL--------DV 212
Cdd:PRK00411 60 IYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIncqiDRTRYaiFSEIARQLFGHPPPSsglsFDELFDKIaeylderdRV 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 213 LMI--DDIQFFANKEATQEEFFHT-FNSLFERSKQ--IIVTSDvfPKNIENIEERIRSRLswGVNAAIEPP----ELetr 283
Cdd:PRK00411 140 LIValDDINYLFEKEGNDVLYSLLrAHEEYPGARIgvIGISSD--LTFLYILDPRVKSVF--RPEEIYFPPytadEI--- 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 284 VAILMKKAEErgielsedvAFF---LGQKLRTNVRELEGA-----------LNRA--IAWSNfTSRQITIDAVREALKdl 347
Cdd:PRK00411 213 FDILKDRVEE---------GFYpgvVDDEVLDLIADLTARehgdarvaidlLRRAglIAERE-GSRKVTEEDVRKAYE-- 280
|
....*...
gi 544682295 348 IASYDHLI 355
Cdd:PRK00411 281 KSEIVHLS 288
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
151-252 |
8.77e-04 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 40.89 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKTHLLHAIGNEILKQnpNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEE 230
Cdd:pfam01695 97 LLGPPGVGKTHLAIALGVEACRA--GYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWGYLPLDQAEANL 174
|
90 100
....*....|....*....|..
gi 544682295 231 FFHTFNSLFERSKQIIVTSDVF 252
Cdd:pfam01695 175 LFQVISKRYEHRSIILTSNLPF 196
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
151-268 |
1.51e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 40.60 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544682295 151 LYGGTGLGKT----HLLHAIGNEILKQNPNARVVYI-----HSE-RFVQDMVKAIKAN---------TIENFKKFYRSLD 211
Cdd:COG1474 56 IYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYVncrqaSTRyRVLSRILEELGSGedipstglsTDELFDRLYEALD 135
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544682295 212 ------VLMIDDIQFFANKEAtqEEFFHTFNSLFERSKQ-----IIVTSDvfPKNIENIEERIRSRLS 268
Cdd:COG1474 136 erdgvlVVVLDEIDYLVDDEG--DDLLYQLLRANEELEGarvgvIGISND--LEFLENLDPRVKSSLG 199
|
|
| |
