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Conserved domains on  [gi|544771762|ref|WP_021197039|]
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MULTISPECIES: DUF2892 domain-containing protein [Ralstonia]

Protein Classification

DUF2892 domain-containing protein( domain architecture ID 10567512)

DUF2892 domain-containing protein, similar to Bacillus subtilis membrane protein YezF

SCOP:  4004795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2892 pfam11127
Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is ...
 11-74 2.39e-12

Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is not known.


:

Pssm-ID: 463227  Cd Length: 66  Bit Score: 55.73  E-value: 2.39e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544771762  11 KNVPNWERAVRIVLALAVVVGGLALAAAPWNWLLAAAGAGFGLTGVVGFCPACALVGRRLQPPK 74
Cdd:pfam11127  3 KNVGTLDRLLRIIVGLVLLALALLGLLGGWGWLLGLVGAVLLLTGLTGFCPLYALLGINTCKAK 66
 
Name Accession Description Interval E-value
DUF2892 pfam11127
Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is ...
 11-74 2.39e-12

Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is not known.


Pssm-ID: 463227  Cd Length: 66  Bit Score: 55.73  E-value: 2.39e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544771762  11 KNVPNWERAVRIVLALAVVVGGLALAAAPWNWLLAAAGAGFGLTGVVGFCPACALVGRRLQPPK 74
Cdd:pfam11127  3 KNVGTLDRLLRIIVGLVLLALALLGLLGGWGWLLGLVGAVLLLTGLTGFCPLYALLGINTCKAK 66
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
1-36 6.82e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 33.00  E-value: 6.82e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 544771762   1 MSFLKSALYVKNVPNWERAVRIVLALAVVVGGLALA 36
Cdd:COG3167    1 MALDLNNLDLREIGSWPLPVKILLLLLLVLLVLALG 36
 
Name Accession Description Interval E-value
DUF2892 pfam11127
Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is ...
 11-74 2.39e-12

Protein of unknown function (DUF2892); This family is conserved in bacteria. The function is not known.


Pssm-ID: 463227  Cd Length: 66  Bit Score: 55.73  E-value: 2.39e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544771762  11 KNVPNWERAVRIVLALAVVVGGLALAAAPWNWLLAAAGAGFGLTGVVGFCPACALVGRRLQPPK 74
Cdd:pfam11127  3 KNVGTLDRLLRIIVGLVLLALALLGLLGGWGWLLGLVGAVLLLTGLTGFCPLYALLGINTCKAK 66
DUF4175 pfam13779
Domain of unknown function (DUF4175);
16-75 2.06e-03

Domain of unknown function (DUF4175);


Pssm-ID: 463981 [Multi-domain]  Cd Length: 833  Bit Score: 34.58  E-value: 2.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544771762   16 WERAVRIVLALAVVVG--------GLALAAAPWNW--LLAAAGAGFGLTGVVGFcpacalvgRRLQPPKR 75
Cdd:pfam13779  15 WERLWPALWPLLSVLGlflalswlGLWLLLPPWLRlgLLAAFALAALAALVWGL--------RRFRWPTR 76
PilO COG3167
Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];
1-36 6.82e-03

Type IV pilus assembly protein PilO [Cell motility, Extracellular structures];


Pssm-ID: 442400 [Multi-domain]  Cd Length: 202  Bit Score: 33.00  E-value: 6.82e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 544771762   1 MSFLKSALYVKNVPNWERAVRIVLALAVVVGGLALA 36
Cdd:COG3167    1 MALDLNNLDLREIGSWPLPVKILLLLLLVLLVLALG 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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