NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|544824168|ref|WP_021240171|]
View 

DUF4435 domain-containing protein [Enterobacter roggenkampii]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4435 super family cl20540
Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. ...
 24-120 1.26e-07

Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.


The actual alignment was detected with superfamily member pfam14491:

Pssm-ID: 433988  Cd Length: 233  Bit Score: 51.21  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544824168   24 FIVVEGSDDVPIYENIIsASTDEDIDfdVIHSGGKP----RIKTFINENPSLSNCIFIIDRDFDVL----DCHNEKLVHL 95
Cdd:pfam14491   4 FLFVEGEDDKKFYRTLI-DRIENRYR--YFPLGGKKkvlkNCQLLAQKEDGGRDMLYFVDADFDYLigniILNNPYIYVT 80

                          90       100
                  ....*....|....*....|....*
gi 544824168   96 ERYSIENFYFCEDVLKAVVAMSIKL 120
Cdd:pfam14491  81 YCYAIENLLIYESTLHKVLVSEFTL 105
 
Name Accession Description Interval E-value
DUF4435 pfam14491
Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. ...
 24-120 1.26e-07

Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.


Pssm-ID: 433988  Cd Length: 233  Bit Score: 51.21  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544824168   24 FIVVEGSDDVPIYENIIsASTDEDIDfdVIHSGGKP----RIKTFINENPSLSNCIFIIDRDFDVL----DCHNEKLVHL 95
Cdd:pfam14491   4 FLFVEGEDDKKFYRTLI-DRIENRYR--YFPLGGKKkvlkNCQLLAQKEDGGRDMLYFVDADFDYLigniILNNPYIYVT 80

                          90       100
                  ....*....|....*....|....*
gi 544824168   96 ERYSIENFYFCEDVLKAVVAMSIKL 120
Cdd:pfam14491  81 YCYAIENLLIYESTLHKVLVSEFTL 105
 
Name Accession Description Interval E-value
DUF4435 pfam14491
Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. ...
 24-120 1.26e-07

Protein of unknown function (DUF4435); This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.


Pssm-ID: 433988  Cd Length: 233  Bit Score: 51.21  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544824168   24 FIVVEGSDDVPIYENIIsASTDEDIDfdVIHSGGKP----RIKTFINENPSLSNCIFIIDRDFDVL----DCHNEKLVHL 95
Cdd:pfam14491   4 FLFVEGEDDKKFYRTLI-DRIENRYR--YFPLGGKKkvlkNCQLLAQKEDGGRDMLYFVDADFDYLigniILNNPYIYVT 80

                          90       100
                  ....*....|....*....|....*
gi 544824168   96 ERYSIENFYFCEDVLKAVVAMSIKL 120
Cdd:pfam14491  81 YCYAIENLLIYESTLHKVLVSEFTL 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH