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Conserved domains on  [gi|544825810|ref|WP_021241807|]
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MULTISPECIES: outer membrane protein assembly factor BamC [Enterobacter]

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10013864)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


:

Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   1 MAYSVQKSRLAKVASVSLVMLLAACSSDSRYKRQVSGDESYLDATPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  81 DIRPPAQPLALVSGARTQFTGDTASLMVE-SARGSTLWPQVVSVIQAKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 160 RYQVSVKPQGYQQAVNVKLLNLEQAGKPVADAASLQRYSTEMLNVIAAGLDKNATDAANAAQSRNGVTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSDSAWQELGAKDPQLASGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 544825810 320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   1 MAYSVQKSRLAKVASVSLVMLLAACSSDSRYKRQVSGDESYLDATPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  81 DIRPPAQPLALVSGARTQFTGDTASLMVE-SARGSTLWPQVVSVIQAKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 160 RYQVSVKPQGYQQAVNVKLLNLEQAGKPVADAASLQRYSTEMLNVIAAGLDKNATDAANAAQSRNGVTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSDSAWQELGAKDPQLASGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 544825810 320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 2.44e-132

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 379.35  E-value: 2.44e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   47 LAELHAPAGMILPIQNGDYNIPVTNGSGLVGKALDIRPPAQPLALVSGARTQFTGDTASLMVESARgSTLWPQVVSVIQA 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSK-DELWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  127 KNYTIDKRDDASQTLTTDWIE-----WNRLDEDQQYRGRYQ--VSVKPQGYQQAVNVKLLNLEQAG--KPVADAASLQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  198 STEMLNVIAAGLDKNATDAANAAQSRNGVTFDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSIT 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 544825810  278 ATYKPLSDSAWQELGAKDPQLASGDYKIQVGDLDNRSSLQFIDPKGHTLTQSQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 2.35e-116

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 340.79  E-value: 2.35e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   7 KSRLAKVASVSLVMLLAACSSDSRYKRqvSGDESYLDATPLAELHAPAGMILPIQNGDYNIPvtNGSGLVGKALDIRPPA 86
Cdd:COG3317    1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  87 QPLALVSGARTQFTGDTASLMVEsARGSTLWPQVVSVIQAKNYTIDKRDDASQTLTTDWIEWNRLDED------------ 154
Cdd:COG3317   77 QVLPLVDGVRIERSGDQRWLVVD-ASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 155 QQYRGRYQVSVKPQ-GYQQAVNVKLLNLEQAG------KPVADAASlQRYSTEMLNVIAAGLDKNATDAANAAQSRNGVT 227
Cdd:COG3317  156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 228 FDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSDSA----WQELGAKDPQLASGDY 303
Cdd:COG3317  235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 544825810 304 KIQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFS 343
Cdd:COG3317  315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 652.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   1 MAYSVQKSRLAKVASVSLVMLLAACSSDSRYKRQVSGDESYLDATPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  81 DIRPPAQPLALVSGARTQFTGDTASLMVE-SARGSTLWPQVVSVIQAKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 160 RYQVSVKPQGYQQAVNVKLLNLEQAGKPVADAASLQRYSTEMLNVIAAGLDKNATDAANAAQSRNGVTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSDSAWQELGAKDPQLASGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 544825810 320 DPKGHTLTQSQNDALVAVFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 2.44e-132

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 379.35  E-value: 2.44e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   47 LAELHAPAGMILPIQNGDYNIPVTNGSGLVGKALDIRPPAQPLALVSGARTQFTGDTASLMVESARgSTLWPQVVSVIQA 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSK-DELWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  127 KNYTIDKRDDASQTLTTDWIE-----WNRLDEDQQYRGRYQ--VSVKPQGYQQAVNVKLLNLEQAG--KPVADAASLQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  198 STEMLNVIAAGLDKNATDAANAAQSRNGVTFDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSIT 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 544825810  278 ATYKPLSDSAWQELGAKDPQLASGDYKIQVGDLDNRSSLQFIDPKGHTLTQSQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 2.35e-116

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 340.79  E-value: 2.35e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810   7 KSRLAKVASVSLVMLLAACSSDSRYKRqvSGDESYLDATPLAELHAPAGMILPIQNGDYNIPvtNGSGLVGKALDIRPPA 86
Cdd:COG3317    1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810  87 QPLALVSGARTQFTGDTASLMVEsARGSTLWPQVVSVIQAKNYTIDKRDDASQTLTTDWIEWNRLDED------------ 154
Cdd:COG3317   77 QVLPLVDGVRIERSGDQRWLVVD-ASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 155 QQYRGRYQVSVKPQ-GYQQAVNVKLLNLEQAG------KPVADAASlQRYSTEMLNVIAAGLDKNATDAANAAQSRNGVT 227
Cdd:COG3317  156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544825810 228 FDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSDSA----WQELGAKDPQLASGDY 303
Cdd:COG3317  235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 544825810 304 KIQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFS 343
Cdd:COG3317  315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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