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Conserved domains on  [gi|544826436|ref|WP_021242427|]
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MULTISPECIES: divergent polysaccharide deacetylase family protein [Enterobacter]

Protein Classification

divergent polysaccharide deacetylase family protein( domain architecture ID 10789863)

divergent polysaccharide deacetylase family protein similar to Escherichia coli YibQ

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
12-239 1.09e-115

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


:

Pssm-ID: 442108  Cd Length: 334  Bit Score: 337.08  E-value: 1.09e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  12 VSALALAAPVYAGKLAIVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLSKQ-PLE 90
Cdd:COG2861  105 AYARPFPAAAAAPKIAIVIDDLGYSLSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKnDPG 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  91 KDTLRPDMSSEEIERIIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVK 170
Cdd:COG2861  185 PGTLLTGMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVP 264
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436 171 VIKRKVFLDDTQNEADIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTLPSD-ITLVRPSDLLN 239
Cdd:COG2861  265 VARRDVFLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARgIELVPVSALLK 334
 
Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
12-239 1.09e-115

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442108  Cd Length: 334  Bit Score: 337.08  E-value: 1.09e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  12 VSALALAAPVYAGKLAIVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLSKQ-PLE 90
Cdd:COG2861  105 AYARPFPAAAAAPKIAIVIDDLGYSLSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKnDPG 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  91 KDTLRPDMSSEEIERIIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVK 170
Cdd:COG2861  185 PGTLLTGMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVP 264
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436 171 VIKRKVFLDDTQNEADIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTLPSD-ITLVRPSDLLN 239
Cdd:COG2861  265 VARRDVFLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARgIELVPVSALLK 334
Polysacc_deac_2 pfam04748
Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 ...
28-238 1.99e-97

Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 (personal obs:Yeats C).


Pssm-ID: 428102  Cd Length: 214  Bit Score: 285.97  E-value: 1.99e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436   28 IVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLS--KQPLEKDTLRPDMSSEEIER 105
Cdd:pfam04748   1 IVIDDLGYNLATAEALLALPPPVTLAILPYAPHSRELAELARAAGHEVLLHLPMEPLSypKNDPGPGALLVGMSPEEIRR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  106 IIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVKVIKRKVFLDDTQNEA 185
Cdd:pfam04748  81 RLEWALARVPGAVGVNNHMGSRFTADERAMRAVLEELKERGLFFLDSRTTAKSVAPKVAKELGVPYAERDVFLDNVQDEA 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 544826436  186 DIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTLPSD-ITLVRPSDLL 238
Cdd:pfam04748 161 AIRKQLDKAEAIARKRGSAIAIGHPYPETLEALKEWLPELEARgIELVPVSALL 214
CE4_DAC2 cd10936
Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This ...
25-237 1.97e-90

Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This family contains an uncharacterized protein BH1492 from Bacillus halodurans, an uncharacterized protein ATU2773 from Agrobacterium tumefaciens C58, and other bacterial hypothetical proteins. Although their functions are still unknown, structural superposition and sequence comparison suggest that BH1492 and ATU2773 might be divergently related to the 7-stranded barrel catalytic domain of polysaccharide deacetylases (DACs) from the carbohydrate esterase 4 (CE4) superfamily, which remove N-linked acetyl groups from cell wall polysaccharides. This family is designated as DAC family 2, a divergent DAC family.


Pssm-ID: 200562  Cd Length: 215  Bit Score: 268.31  E-value: 1.97e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  25 KLAIVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLSKQPLEKD-TLRPDMSSEEI 103
Cdd:cd10936    1 RLAIVIDDLGYDLATAEALLALPFPVTLAILPYAPHAAELAEAARAAGHEVLLHLPMEPLGYPKNDPPgALLTGMSAEEI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436 104 ERIIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVKVIKRKVFLDDTQN 183
Cdd:cd10936   81 EKRLEAALARVPGAVGVNNHMGSRFTADREAMRQVLEALKERGLFFVDSRTTPKSVAYRVAKELGVPTARRDVFLDNEQD 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 544826436 184 EADIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTL-PSDITLVRPSDL 237
Cdd:cd10936  161 EAAIRRQLDKAAKIARKRGSAIAIGHPRPETLAALKEWLPELeARGIELVPVSAL 215
 
Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
12-239 1.09e-115

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442108  Cd Length: 334  Bit Score: 337.08  E-value: 1.09e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  12 VSALALAAPVYAGKLAIVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLSKQ-PLE 90
Cdd:COG2861  105 AYARPFPAAAAAPKIAIVIDDLGYSLSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKnDPG 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  91 KDTLRPDMSSEEIERIIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVK 170
Cdd:COG2861  185 PGTLLTGMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVP 264
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436 171 VIKRKVFLDDTQNEADIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTLPSD-ITLVRPSDLLN 239
Cdd:COG2861  265 VARRDVFLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARgIELVPVSALLK 334
Polysacc_deac_2 pfam04748
Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 ...
28-238 1.99e-97

Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 (personal obs:Yeats C).


Pssm-ID: 428102  Cd Length: 214  Bit Score: 285.97  E-value: 1.99e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436   28 IVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLS--KQPLEKDTLRPDMSSEEIER 105
Cdd:pfam04748   1 IVIDDLGYNLATAEALLALPPPVTLAILPYAPHSRELAELARAAGHEVLLHLPMEPLSypKNDPGPGALLVGMSPEEIRR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  106 IIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVKVIKRKVFLDDTQNEA 185
Cdd:pfam04748  81 RLEWALARVPGAVGVNNHMGSRFTADERAMRAVLEELKERGLFFLDSRTTAKSVAPKVAKELGVPYAERDVFLDNVQDEA 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 544826436  186 DIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTLPSD-ITLVRPSDLL 238
Cdd:pfam04748 161 AIRKQLDKAEAIARKRGSAIAIGHPYPETLEALKEWLPELEARgIELVPVSALL 214
CE4_DAC2 cd10936
Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This ...
25-237 1.97e-90

Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This family contains an uncharacterized protein BH1492 from Bacillus halodurans, an uncharacterized protein ATU2773 from Agrobacterium tumefaciens C58, and other bacterial hypothetical proteins. Although their functions are still unknown, structural superposition and sequence comparison suggest that BH1492 and ATU2773 might be divergently related to the 7-stranded barrel catalytic domain of polysaccharide deacetylases (DACs) from the carbohydrate esterase 4 (CE4) superfamily, which remove N-linked acetyl groups from cell wall polysaccharides. This family is designated as DAC family 2, a divergent DAC family.


Pssm-ID: 200562  Cd Length: 215  Bit Score: 268.31  E-value: 1.97e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436  25 KLAIVIDDFGYRPHYENQVLAMPSAISVAVLPNAPHAREMATKAHSSGHQVLIHLPMAPLSKQPLEKD-TLRPDMSSEEI 103
Cdd:cd10936    1 RLAIVIDDLGYDLATAEALLALPFPVTLAILPYAPHAAELAEAARAAGHEVLLHLPMEPLGYPKNDPPgALLTGMSAEEI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544826436 104 ERIIRDAYNKVPYAVGLNNHMGSAMTSSLYGMLKVMQALERYNLYFLDSMTIGNSQAMRAAQGTGVKVIKRKVFLDDTQN 183
Cdd:cd10936   81 EKRLEAALARVPGAVGVNNHMGSRFTADREAMRQVLEALKERGLFFVDSRTTPKSVAYRVAKELGVPTARRDVFLDNEQD 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 544826436 184 EADIRVQFNRAVQLARRNGSAIAIGHPHPSTVRVLQQMLPTL-PSDITLVRPSDL 237
Cdd:cd10936  161 EAAIRRQLDKAAKIARKRGSAIAIGHPRPETLAALKEWLPELeARGIELVPVSAL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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