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Conserved domains on  [gi|544872581|ref|WP_021285873|]
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DUF3113 family protein [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3113 super family cl12850
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.89e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


The actual alignment was detected with superfamily member pfam11310:

Pssm-ID: 288203  Cd Length: 60  Bit Score: 80.79  E-value: 1.89e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872581   1 MQQQAYINATIDIRIPTEVDYQHFDDVDNEKEALADYLYNNPDELLEYDNLKIRNVNVEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.89e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 80.79  E-value: 1.89e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872581   1 MQQQAYINATIDIRIPTEVDYQHFDDVDNEKEALADYLYNNPDELLEYDNLKIRNVNVEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
Mcm2 COG1241
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ...
 18-56 3.92e-03

DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];


Pssm-ID: 440854 [Multi-domain]  Cd Length: 682  Bit Score: 33.23  E-value: 3.92e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 544872581  18 EVDYQHFDDVDNEkeaLADYLYNNPDELLEYDNLKIRNV 56
Cdd:COG1241   36 VVDYNDLYSFDPD---LADDLLENPDEVLEAAEEALREI 71
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.89e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 80.79  E-value: 1.89e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 544872581   1 MQQQAYINATIDIRIPTEVDYQHFDDVDNEKEALADYLYNNPDELLEYDNLKIRNVNVEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
Mcm2 COG1241
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ...
 18-56 3.92e-03

DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];


Pssm-ID: 440854 [Multi-domain]  Cd Length: 682  Bit Score: 33.23  E-value: 3.92e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 544872581  18 EVDYQHFDDVDNEkeaLADYLYNNPDELLEYDNLKIRNV 56
Cdd:COG1241   36 VVDYNDLYSFDPD---LADDLLENPDEVLEAAEEALREI 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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