|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
126-426 |
1.94e-146 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 418.27 E-value: 1.94e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 126 LFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKS 205
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 206 IVEDILTNENSTLDIEP-VPCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLaaadtfraaaTEQLEIWANRTNVDIIK 284
Cdd:COG0552 81 ELLEILDPVDKPLAIEEkKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLaagdtfraaaIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 285 HQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKT 364
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 544959590 365 FKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFGN 426
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
119-425 |
9.96e-146 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 417.19 E-value: 9.96e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 119 KEDKKVNLFERLKQGLTKAKQGITDRIDEVLkSYTKIDEELLEDLEEILITADVGVNTTMDIIERLRDKIKQKGITEPIK 198
Cdd:PRK10416 9 KKEKKEGWFERLKKGLSKTRENFGEGINGLF-AKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 199 VREELKSIVEDILTNENSTLDIEPV-PCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANR 277
Cdd:PRK10416 88 LKELLKEELAEILEPVEKPLNIEEKkPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGER 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 278 TNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQN 357
Cdd:PRK10416 168 VGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544959590 358 AVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFG 425
Cdd:PRK10416 248 ALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
170-424 |
4.62e-100 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 299.56 E-value: 4.62e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTN------ENSTLDIEPVPCIILMVGVNGVGKTTTIGK 243
Cdd:TIGR00064 17 SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllkntDLELIVEENKPNVILFVGVNGVGKTTTIAK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 244 LANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKAN 323
Cdd:TIGR00064 97 LANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 324 LMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIG 403
Cdd:TIGR00064 177 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIG 256
|
250 260
....*....|....*....|.
gi 544959590 404 VGESVEDLQDFNAKSFSDALF 424
Cdd:TIGR00064 257 VGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
226-423 |
1.49e-95 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 285.23 E-value: 1.49e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
224-425 |
3.07e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 266.20 E-value: 3.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 224 PCIILMVGVNGVGKTTTIGKLANRYK-KDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAA 302
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 303 KARKTDVLICDTAGRLHNKANLMNELGKVFKIVDrefPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGT 382
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK---PD---EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 544959590 383 AKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFG 425
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
226-423 |
2.64e-85 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 258.63 E-value: 2.64e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVdrefpeAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
27-147 |
2.06e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 53.25 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 27 VEDSVDnlENLEETIFSGLEEEVIDKVED-----VEEKNEESVNNEGTEEIENFEKIEVEMD-SNGKEVENISNNDSQEE 100
Cdd:PTZ00341 979 VEENVE--ENVEENVEENVEENVEENIEEnveenVEENIEENVEEYDEENVEEVEENVEEYDeENVEEIEENAEENVEEN 1056
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 544959590 101 IIEELENYDEIESKEIED--KEDKKVNLFERLKQGLTKAKQGITDRIDE 147
Cdd:PTZ00341 1057 IEENIEEYDEENVEEIEEniEENIEENVEENVEENVEEIEENVEENVEE 1105
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
126-426 |
1.94e-146 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 418.27 E-value: 1.94e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 126 LFERLKQGLTKAKQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKS 205
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 206 IVEDILTNENSTLDIEP-VPCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLaaadtfraaaTEQLEIWANRTNVDIIK 284
Cdd:COG0552 81 ELLEILDPVDKPLAIEEkKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLaagdtfraaaIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 285 HQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKT 364
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 544959590 365 FKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFGN 426
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGE 302
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
119-425 |
9.96e-146 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 417.19 E-value: 9.96e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 119 KEDKKVNLFERLKQGLTKAKQGITDRIDEVLkSYTKIDEELLEDLEEILITADVGVNTTMDIIERLRDKIKQKGITEPIK 198
Cdd:PRK10416 9 KKEKKEGWFERLKKGLSKTRENFGEGINGLF-AKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 199 VREELKSIVEDILTNENSTLDIEPV-PCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANR 277
Cdd:PRK10416 88 LKELLKEELAEILEPVEKPLNIEEKkPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGER 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 278 TNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQN 357
Cdd:PRK10416 168 VGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544959590 358 AVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFG 425
Cdd:PRK10416 248 ALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
170-424 |
4.62e-100 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 299.56 E-value: 4.62e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTN------ENSTLDIEPVPCIILMVGVNGVGKTTTIGK 243
Cdd:TIGR00064 17 SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllkntDLELIVEENKPNVILFVGVNGVGKTTTIAK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 244 LANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKAN 323
Cdd:TIGR00064 97 LANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVN 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 324 LMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIG 403
Cdd:TIGR00064 177 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIG 256
|
250 260
....*....|....*....|.
gi 544959590 404 VGESVEDLQDFNAKSFSDALF 424
Cdd:TIGR00064 257 VGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
226-423 |
1.49e-95 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 285.23 E-value: 1.49e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVDREFPEAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
224-425 |
3.07e-88 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 266.20 E-value: 3.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 224 PCIILMVGVNGVGKTTTIGKLANRYK-KDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAA 302
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKlKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 303 KARKTDVLICDTAGRLHNKANLMNELGKVFKIVDrefPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGT 382
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK---PD---EVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 544959590 383 AKGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDALFG 425
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
226-423 |
2.64e-85 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 258.63 E-value: 2.64e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVdrefpeAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVV------APDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:pfam00448 156 GAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
170-419 |
1.92e-67 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 220.28 E-value: 1.92e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 170 ADVGVNTTMDIIERLRDKIK----QKGITeP----IK-VREELksivEDILTNENSTLDIEPV-PCIILMVGVNGVGKTT 239
Cdd:COG0541 41 ADVNLKVVKDFIERVKERALgeevLKSLT-PgqqvIKiVHDEL----VELLGGENEELNLAKKpPTVIMMVGLQGSGKTT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 240 TIGKLANRYKKDGKKVLLaaadtfraAAT--------EQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLI 311
Cdd:COG0541 116 TAAKLAKYLKKKGKKPLL--------VAAdvyrpaaiEQLKTLGEQIGVPVFPEEDGKDPVDIAKRALEYAKKNGYDVVI 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 312 CDTAGRLHNKANLMNELGKVFKIVDrefPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAV 391
Cdd:COG0541 188 VDTAGRLHIDEELMDELKAIKAAVN---PD---ETLLVVDAMTGQDAVNVAKAFNEALGLTGVILTKLDGDARGGAALSI 261
|
250 260
....*....|....*....|....*...
gi 544959590 392 KSEVDVPVKLIGVGESVEDLQDFNAKSF 419
Cdd:COG0541 262 RAVTGKPIKFIGTGEKLDDLEPFHPDRM 289
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
99-425 |
2.18e-66 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 215.22 E-value: 2.18e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 99 EEIIEELENYDEIESKEIEDKEDKKVNLFERLKQGLTKAKQgITDRIDEVlksytkideelledlEEILITADVGVNTTM 178
Cdd:PRK14974 22 EEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD-IEDLLEEL---------------ELELLESDVALEVAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 179 DIIERLRD-----KIKQKGITEPIkVREELKSIVEDILTNENSTLDIEPV-----PCIILMVGVNGVGKTTTIGKLANRY 248
Cdd:PRK14974 86 EILESLKEklvgkKVKRGEDVEEI-VKNALKEALLEVLSVGDLFDLIEEIkskgkPVVIVFVGVNGTGKTTTIAKLAYYL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 249 KKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNEL 328
Cdd:PRK14974 165 KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDEL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 329 GKVFKIVDREFpeakreVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV 408
Cdd:PRK14974 245 KKIVRVTKPDL------VIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGY 318
|
330
....*....|....*..
gi 544959590 409 EDLQDFNAKSFSDALFG 425
Cdd:PRK14974 319 DDLIPFDPDWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
226-423 |
5.29e-65 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 206.46 E-value: 5.29e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIvdrefpEAKREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEV------ESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKG 155
|
170 180 190
....*....|....*....|....*....|....*...
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:cd03115 156 GAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
226-414 |
9.58e-58 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 187.81 E-value: 9.58e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVdreFPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKG 385
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVL---NPD---EVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 544959590 386 GVVLAVKSEVDVPVKLIGVGESVEDLQDF 414
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
170-425 |
5.73e-52 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 180.40 E-value: 5.73e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 170 ADVGVNTTMDIIERLRDKIKQ----KGITepikVREELKSIVEDILTN----ENSTLDIEPVPCIILMVGVNGVGKTTTI 241
Cdd:PRK00771 37 ADVNVKLVKELSKSIKERALEeeppKGLT----PREHVIKIVYEELVKllgeETEPLVLPLKPQTIMLVGLQGSGKTTTA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 242 GKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKarKTDVLICDTAGRLHNK 321
Cdd:PRK00771 113 AKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALE 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 322 ANLMNELGKVFKIVDrefPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKL 401
Cdd:PRK00771 191 EDLIEEMKEIKEAVK---PD---EVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKF 264
|
250 260
....*....|....*....|....
gi 544959590 402 IGVGESVEDLQDFNAKSFSDALFG 425
Cdd:PRK00771 265 IGTGEKIDDLERFDPDRFISRLLG 288
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
225-419 |
7.16e-46 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 156.97 E-value: 7.16e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 225 CIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKA 304
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 305 RKTDVLICDTAGRLHNKANLMNELGKVFKIVDrefPEakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAK 384
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK---PD---EVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*
gi 544959590 385 GGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSF 419
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRF 189
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
170-425 |
3.13e-33 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 129.57 E-value: 3.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 170 ADVGVNTTMDIIERLRDKIKQKGITEPIKVREELKSIVEDILTNensTLD--IEPV------PCIILMVGVNGVGKTTTI 241
Cdd:TIGR01425 41 SDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN---LVDpgVEAFtpkkgkTCVIMFVGLQGAGKTTTC 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 242 GKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARKTDVLICDTAGRLHNK 321
Cdd:TIGR01425 118 TKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 322 ANLMNELGKVFKIVDREfpeakrEVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKL 401
Cdd:TIGR01425 198 KELFEEMQQVREAIKPD------SIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIF 271
|
250 260
....*....|....*....|....
gi 544959590 402 IGVGESVEDLQDFNAKSFSDALFG 425
Cdd:TIGR01425 272 IGTGEHVDEFEIFDAEPFVSKLLG 295
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
227-423 |
1.16e-31 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 119.64 E-value: 1.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 227 ILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDAIKAAKARK 306
Cdd:cd17876 3 IVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 307 TDVLICDTAGRLHNKANLMNELGKVFKIVDrefPEAkreVLLVVDATTGQNAVVQAKTF-KEVAD---------ITGIVL 376
Cdd:cd17876 83 FDVVLIDTAGRMQNNEPLMRALAKLIKENN---PDL---VLFVGEALVGNDAVDQLKKFnQALADyspsdnprlIDGIVL 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 544959590 377 TKLDGTA-KGGVVLAVKSEVDVPVKLIGVGESVEDLQDFNAKSFSDAL 423
Cdd:cd17876 157 TKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
226-419 |
4.45e-23 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 95.69 E-value: 4.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKD-GKKVLLAAADTFRAAATEQLEIWANRTNVdiikhqegadPGAVVFDAIKAAKA 304
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEDPEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 305 ----RKTDVLICDTAGRLHNKANLMNELgkvfkivdREFPEAKR--EVLLVVDATTgqnavvQAKTFKEVAD------IT 372
Cdd:cd17873 72 lerlSDRDLILIDTAGRSPRDKEQLEEL--------KELLGAGEdiEVHLVLSATT------KAKDLKEIIErfsplgYR 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 544959590 373 GIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV-EDLQDFNAKSF 419
Cdd:cd17873 138 GLILTKLDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRL 185
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
179-425 |
6.36e-23 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 99.17 E-value: 6.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 179 DIIERLRDKIKQKGITEpiKVREELKSIVEDILTNENStlDIEPVPCIILMVGVNGVGKTTTIGKLANRYK-KDGKKVLL 257
Cdd:COG1419 123 ELARELLEKLPEDLSAE--EAWRALLEALARRLPVAED--PLLDEGGVIALVGPTGVGKTTTIAKLAARFVlRGKKKVAL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 258 aaadtfraaAT---------EQLEIWANRTNVDIIkhqegadpgaVVFDAIKAAKA----RKTDVLICDTAGRLHNKANL 324
Cdd:COG1419 199 ---------ITtdtyrigavEQLKTYARILGVPVE----------VAYDPEELKEAlerlRDKDLVLIDTAGRSPRDPEL 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 325 MNELGKVFKIVDRefpeakREVLLVVDATT-GQNAVVQAKTFKEVaDITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIG 403
Cdd:COG1419 260 IEELKALLDAGPP------IEVYLVLSATTkYEDLKEIVEAFSSL-GLDGLILTKLDETASLGSILNLLIRTGLPLSYIT 332
|
250 260
....*....|....*....|...
gi 544959590 404 VGESV-EDLQDFNAKSFSDALFG 425
Cdd:COG1419 333 NGQRVpEDIEVADPERLARLLLG 355
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
56-412 |
9.57e-17 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 81.48 E-value: 9.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 56 VEEKNEESVNNEGTEEIENFEK--------IEVEMDSNGKEVENISNNDSQEEIIEELENYDEIESKEIE--DKEDKKVN 125
Cdd:PRK05703 51 VDEDETPKKNPVLREEKRKPAKsilslqalLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKaaAESKVVQK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 126 LFERLKQGLtkakQGITDRIDEVLKSYTKIDEELLEDLEEILITADVGVNTtmDIIERLRDKIKQKGITEPIKVREELKS 205
Cdd:PRK05703 131 ELDELRDEL----KELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGLSP--EIAEKLLKLLLEHMPPRERTAWRYLLE 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 206 IVEDILTNENStlDIEPVPCIILMVGVNGVGKTTTIGKLANRY--KKDGKKVLLaaadtfraaAT---------EQLEIW 274
Cdd:PRK05703 205 LLANMIPVRVE--DILKQGGVVALVGPTGVGKTTTLAKLAARYalLYGKKKVAL---------ITldtyrigavEQLKTY 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 275 ANRTNVDIIkhqegadpgaVVFDAIKAAKA----RKTDVLICDTAGRLHNKANLMNELgkvfkivdREFPEAKRE---VL 347
Cdd:PRK05703 274 AKIMGIPVE----------VVYDPKELAKAleqlRDCDVILIDTAGRSQRDKRLIEEL--------KALIEFSGEpidVY 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544959590 348 LVVDATTgQNAVVQA--KTFKEVaDITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV-EDLQ 412
Cdd:PRK05703 336 LVLSATT-KYEDLKDiyKHFSRL-PLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIK 401
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
226-354 |
2.84e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 61.24 E-value: 2.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEiwanrtNVDIIKHQEGADPGAVVFDAIKAAKAR 305
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARKL 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 544959590 306 KTDVLICDTAGRLHNKANLMNELGKVFKIVDreFPEAKREVLLVVDATT 354
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLL--LLLKSEKNLTVILTTN 124
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
57-409 |
1.01e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 63.16 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 57 EEKNEESvnNEGTEEIEnfekiEVEMDSNGKEVENISNNDSQEEIIEELEN------YDEIESKEIEDKEDKKVNLFERL 130
Cdd:PRK11889 61 EDKQEEV--NEGTAQFH-----EQLMDVVNDPSEQIVKANGIQSVLHNLENvttpmsYAAMQTGNSEEWARKKEKLLKLF 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 131 KQGLTKAKQGITDRIDE---VLKSYTKIDEELLEDLEEILITADVGVNTTMDIIER----------LRDKIKQKGITEPI 197
Cdd:PRK11889 134 EKGIVVVKQTEETKVTKkqkAVKKVVPVKKEEVVVKKEKQESVPFIIQKVIRMLEQndveqyfihaYAEKLKVKFENATM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 198 KVREE-LKSIVEDILTNENSTLDIEPVPCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWAN 276
Cdd:PRK11889 214 ITEEEvIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 277 RTNVDIIK-HQEGADPGAVVFDAIKAakarKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFpeakreVLLVVDATTG 355
Cdd:PRK11889 294 TIGFEVIAvRDEAAMTRALTYFKEEA----RVDYILIDTAGKNYRASETVEEMIETMGQVEPDY------ICLTLSASMK 363
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 544959590 356 QNAVVQAKT-FKEVaDITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVE 409
Cdd:PRK11889 364 SKDMIEIITnFKDI-HIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
226-418 |
3.77e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 61.54 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRY--KKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIikHQegADPGAVVFDAIKAAK 303
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV--HE--ADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 304 ARKTdVLIcDTAGRLHNKANLMNELgkvfkivdrEFPEAKREV--LLVVDATT---GQNAVVqaKTFKEvADITGIVLTK 378
Cdd:PRK12727 428 DYKL-VLI-DTAGMGQRDRALAAQL---------NWLRAARQVtsLLVLPANAhfsDLDEVV--RRFAH-AKPQGVVLTK 493
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 544959590 379 LDGTAKGGVVLAVKSEVDVPVKLIGVGESV-EDLQDFNAKS 418
Cdd:PRK12727 494 LDETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAAS 534
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
199-424 |
5.13e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 61.36 E-value: 5.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 199 VREELKSIVEdILTNENSTLDIEPVpciILMVGVNGVGKTTTIGKLANRY--KKDGKKVLLAAADTFRAAATEQLEIWAN 276
Cdd:PRK14723 164 IRNELATHLP-VLRDEDALLAQGGV---LALVGPTGVGKTTTTAKLAARCvaREGADQLALLTTDSFRIGALEQLRIYGR 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 277 RTNVDIIKHQEGADpgavVFDAIKAAKARKTdVLIcDTAG---RLHNKANLMNELGKVFKIVDRefpeakreVLLVVDAT 353
Cdd:PRK14723 240 ILGVPVHAVKDAAD----LRFALAALGDKHL-VLI-DTVGmsqRDRNVSEQIAMLCGVGRPVRR--------LLLLNAAS 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544959590 354 TGQ--NAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV-EDLQDFNAKSFSDALF 424
Cdd:PRK14723 306 HGDtlNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQKVpEHLELAQADELVDRAF 379
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
186-409 |
5.77e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 56.68 E-value: 5.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 186 DKIKQKGITEPIKVREELKSIVEDILTNENSTLDIEPVPCIILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRA 265
Cdd:PRK06731 37 EKLKVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 266 AATEQLEIWANRTNVDIIKHQegaDPGAVVFDAIKAAKARKTDVLICDTAGRLHNKANLMNELGKVFKIVDREFpeakre 345
Cdd:PRK06731 117 GTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDY------ 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544959590 346 VLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVE 409
Cdd:PRK06731 188 ICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
179-316 |
2.10e-08 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 55.03 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 179 DIIERLRDKIKQKgiTEPIKVREELKSIVEDILTNENSTLDIEPVPCIILMVGVNGVGKTTTIGKLANRY--KKDGKKVL 256
Cdd:TIGR03499 151 ELARELLEKLPED--ADAEDAWRWLREALEGMLPVKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFalEHGKKKVA 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544959590 257 LaaadtfraaAT---------EQLEIWANRTNVDIIKHQEGADpgavvFDAIKAAKARKTDVLIcDTAG 316
Cdd:TIGR03499 229 L---------ITtdtyrigavEQLKTYAEILGIPVKVARDPKE-----LREALDRLRDKDLILI-DTAG 282
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
27-147 |
2.06e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 53.25 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 27 VEDSVDnlENLEETIFSGLEEEVIDKVED-----VEEKNEESVNNEGTEEIENFEKIEVEMD-SNGKEVENISNNDSQEE 100
Cdd:PTZ00341 979 VEENVE--ENVEENVEENVEENVEENIEEnveenVEENIEENVEEYDEENVEEVEENVEEYDeENVEEIEENAEENVEEN 1056
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 544959590 101 IIEELENYDEIESKEIED--KEDKKVNLFERLKQGLTKAKQGITDRIDE 147
Cdd:PTZ00341 1057 IEENIEEYDEENVEEIEEniEENIEENVEENVEENVEEIEENVEENVEE 1105
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
26-147 |
2.21e-06 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 50.17 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 26 EVEDSV--DNLENLEETIFSGLEEEVIDKVED-----VEEKNEESVNNEGTEEIEnfEKIEVEMDSNGKEVENISNNDSQ 98
Cdd:PTZ00341 950 DAEENVeeDAEENVEENVEENVEENVEENVEEnveenVEENVEENVEENVEENIE--ENVEENVEENIEENVEEYDEENV 1027
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 544959590 99 EEIIEELENYDEIESKEIEDKEDKKV--NLFERLKQGLTKAKQGITDRIDE 147
Cdd:PTZ00341 1028 EEVEENVEEYDEENVEEIEENAEENVeeNIEENIEEYDEENVEEIEENIEE 1078
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
226-410 |
3.19e-06 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 48.95 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANR--YKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPgavvfdAIKAAK 303
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL------QLALAE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 304 ARKTDVLICDTAGRLHNKANLMNELGKVFKivdrefPEAKREVLLVVDATT---GQNAVVQA------KTFKEVADITGI 374
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHG------ADTPVQRLLLLNATShgdTLNEVVQAyrsaagQPKAALPDLAGC 286
|
170 180 190
....*....|....*....|....*....|....*.
gi 544959590 375 VLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESVED 410
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
26-122 |
1.60e-05 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 47.47 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 26 EVEDSVDnlENLEETIFSGLEEEVIDKVEDVEEKNEESVNNEGTEEIE-NFEKIEVEMDSNgkeVENISNNDSQEEIIEE 104
Cdd:PTZ00341 1044 EIEENAE--ENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEeNVEEIEENVEEN---VEENAEENAEENAEEN 1118
|
90
....*....|....*...
gi 544959590 105 LENYDEIESKEIEDKEDK 122
Cdd:PTZ00341 1119 AEEYDDENPEEHNEEYDE 1136
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
226-408 |
6.60e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 44.95 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYK-KDGKKVLLAAADTFRAAATEQLEIWanrtnvdiikhqegADPGAVVFDAIKAAKA 304
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRY--------------ADTMGMPFYPVKDIKK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 305 RK-------TDVLICDTAGRLH-NKANL--MNELGKVFKIVDrefpeaKREVLLVVDATTGQNAVVQAKTFKEVADITGI 374
Cdd:PRK12724 291 FKetlardgSELILIDTAGYSHrNLEQLerMQSFYSCFGEKD------SVENLLVLSSTSSYHHTLTVLKAYESLNYRRI 364
|
170 180 190
....*....|....*....|....*....|....
gi 544959590 375 VLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV 408
Cdd:PRK12724 365 LLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
229-424 |
2.69e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 43.01 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 229 MVGVNGVGKTTTIGKLANR--YKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPgAVVFDAIKAakarK 306
Cdd:PRK14721 196 LIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL-QLMLHELRG----K 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 307 TDVLIcDTAGRLHNKANLMNELGKVFKIVDrefpEAKREVLLvvdattgqNAVVQAKTFKEVAD------ITGIVLTKLD 380
Cdd:PRK14721 271 HMVLI-DTVGMSQRDQMLAEQIAMLSQCGT----QVKHLLLL--------NATSSGDTLDEVISayqghgIHGCIITKVD 337
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 544959590 381 GTAKGGVVLAVKSEVDVPVKLIGVGESV-EDLQDFNAKSFSDALF 424
Cdd:PRK14721 338 EAASLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
226-410 |
3.24e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 42.80 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKhqegADPGAVVFDAIK-AAKA 304
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQyMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 305 RKTDVLICDTAGRLHNKANLMNELGKVFKIVDREfpeakrevLLVVDATTGQNAVVQAKTFKEVAD--ITGIVLTKLDGT 382
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPD--------LTCFTFSSGMKSADVMTILPKLAEipIDGFIITKMDET 355
|
170 180
....*....|....*....|....*...
gi 544959590 383 AKGGVVLAVKSEVDVPVKLIGVGESVED 410
Cdd:PRK12726 356 TRIGDLYTVMQETNLPVLYMTDGQNITE 383
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
169-213 |
8.30e-04 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 37.92 E-value: 8.30e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 544959590 169 TADVGVNTTMDIIERLRDKIKQKGITEpIKVREELKSIVEDILTN 213
Cdd:smart00963 32 EADVGVEVVKEIIERVKEKAKGEVLKG-LTPKQEVKKILKEELVK 75
|
|
| PRK14160 |
PRK14160 |
heat shock protein GrpE; Provisional |
46-150 |
4.22e-03 |
|
heat shock protein GrpE; Provisional
Pssm-ID: 237629 [Multi-domain] Cd Length: 211 Bit Score: 38.20 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 46 EEEVIDKVEDVEEKNEESVNNEGTEEIENFEKIEVEMDSNGKEVENISNNDSQEEIIEELENYDEIESKEIEDKEDKKVN 125
Cdd:PRK14160 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLR 86
|
90 100
....*....|....*....|....*....
gi 544959590 126 L---FERLKQGLTKAKQGI-TDRIDEVLK 150
Cdd:PRK14160 87 TvaeYDNYRKRTAKEKEGIySDACEDVLK 115
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
96-408 |
5.23e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 38.73 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 96 DSQEEIIEELENYDEIESKEIEDKEDKKVNLFERLKQGLTKAKQGITDRIDEVLKSytkideelledleeilitADVGVN 175
Cdd:PRK12723 65 NVEDEKRKILQSIKKEENSSIEDVLKEVKSLKNELAHKKEEINHPTILKIEDILRE------------------NDFSES 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 176 TTMDIIERLRDKIKQKGITEPIKVREE-LKSIVEDILTNENSTLDIEPVpcIILMVGVNGVGKTTTIGKLANRY----KK 250
Cdd:PRK12723 127 YIKDINEFIKKEFSLSDLDDYDKVRDSvIIYIAKTIKCSGSIIDNLKKR--VFILVGPTGVGKTTTIAKLAAIYginsDD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544959590 251 DGKKVLLAAADTFRAAATEQLEIWANRTNVDIIKHQEGADPGAVVFDaikaakARKTDVLICDTAGRLHNKANLMNELGK 330
Cdd:PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ------SKDFDLVLVDTIGKSPKDFMKLAEMKE 278
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544959590 331 VFKIVDREfpeakREVLLVVDATTGQNAVVQAKTFKEVADITGIVLTKLDGTAKGGVVLAVKSEVDVPVKLIGVGESV 408
Cdd:PRK12723 279 LLNACGRD-----AEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
226-257 |
5.64e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 36.25 E-value: 5.64e-03
10 20 30
....*....|....*....|....*....|..
gi 544959590 226 IILMVGVNGVGKTTTIGKLANRYKKDGKKVLL 257
Cdd:cd01983 3 IAVTGGKGGVGKTTLAAALAVALAAKGYKVLL 34
|
|
| |
