|
Name |
Accession |
Description |
Interval |
E-value |
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
2-545 |
0e+00 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 582.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 2 LTVLVMSLVIFLLAPIIYLFVQAFLDKDGVFVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKI 81
Cdd:TIGR03262 7 LAGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 82 KFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLGVHvPIYGAVGIILAQIIYVFPQSFQILYISLSSTDYRLYE 161
Cdd:TIGR03262 87 PGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGF-SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 162 ASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEFNVLSIDVYKQIIGQQNMPMGATVSILLLIP 241
Cdd:TIGR03262 166 AARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLLP 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 242 AIISFIVTKKIEKNQNSYITSKSIPYKVKSNKLRDGVLGGIIGLIAFGIIAVMLTVILSSLISVWPYDLRLTLEHFSMKN 321
Cdd:TIGR03262 246 ALLAFGIDRAIQRRQRAQLSSRSVPYQPKPNRVRDAACLVYCAIISAALLAVVGMAVYASLVKFWPYNLSLTLKHYNFDL 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 322 -SIDGIKPFVNSIKMSLLTAILGTSFVFLFAYLNEKTEKAPYLKSFGYFLSTLPMALSGLVLGIAYVLFFNKLEfnfmdt 400
Cdd:TIGR03262 326 mDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNAPT------ 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 401 iyikNLFNGIYGTLLIMVICNIVHFFSVAFITATTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVLENFMYFFL 480
Cdd:TIGR03262 400 ----NPLNGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFV 475
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544973550 481 NSMVTISALVFIYTASSKVAAISIVQLDDKGSTAQAAALAVLILVTNILVKVIYEFIKNRLEKRT 545
Cdd:TIGR03262 476 NSMTTVSAVVFLYSPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAVAKLLFALASRRLLRRT 540
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
2-540 |
4.34e-119 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 361.79 E-value: 4.34e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 2 LTVLVMSLVIFLLAPIIYLFVQAFldkdgvFVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKI 81
Cdd:COG1178 13 LLLLALLLALLVLLPLLALLLRAF------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 82 KFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLL----GVHVP-IYGAVGIILAQIIYVFPQSFQILYISLSSTD 156
Cdd:COG1178 87 PGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLralfGLEPPdIYGLGGIILVLVLFNYPYVYLLLRAALRSID 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 157 YRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEFNVLSIDVYKQIIGQQNMPMGATVSI 236
Cdd:COG1178 167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQAWLGDFDLGAAAALAL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 237 LLLIPAIISFIVTKKIEKNQN-SYITSKSIPY-KVKSNKLRDGVLGGIIGLIAFGIIAVMLTVILSSLISVwpYDLRLTL 314
Cdd:COG1178 247 VLLLLVLLLLLLERRLRRRRRyATVGGRARRPrRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKA--LDDNLTL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 315 EHFS-MKNSIDGIKPFVNSIKMSLLTAILGTSFVFLFAYLNEKTEKApyLKSFGYFLSTLPMALSGLVLGIAYVLFFNKL 393
Cdd:COG1178 325 DNYRfVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGR--LARLLDRLAMLPYAVPGIVLGLGLLLLFNRP 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 394 efnfmdtiyiknLFNGIYGTLLIMVICNIVHFFSVAFITATTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVLE 473
Cdd:COG1178 403 ------------LPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLA 470
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 544973550 474 NFMYFFLNSMVTISALVFIYTASSKVAAISIVQLDDKGSTAQAAALAVLILVTNILVKVIYEFIKNR 540
Cdd:COG1178 471 AALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
9-254 |
1.59e-32 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 126.03 E-value: 1.59e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 9 LVIFLLAPIIYLFVQAFLDKDGVFV-----GLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKIKF 83
Cdd:COG1176 22 LLLFFVLPLLLLLVYSFTTRDPYGGvvpgfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRW 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 84 KGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLG----VHVPI---YGAVGIILAQIIYVFPQSFQILYISLSSTD 156
Cdd:COG1176 102 RNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLalglIDEPLrllYTEFAVVIGLVYVYLPFMVLPLYAALEKID 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 157 YRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGG-EFNVLSIDVYKQIIGQQNMPMGATVS 235
Cdd:COG1176 182 PSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGgKVLMIGNLIYQQFLSALNWPLAAALA 261
|
250
....*....|....*....
gi 544973550 236 ILLLIPAIISFIVTKKIEK 254
Cdd:COG1176 262 VVLLLIVLLVLLLYLRLLR 280
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
2-248 |
4.76e-31 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 121.37 E-value: 4.76e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 2 LTVLVMSLVIFLLAPIIYLFVQAFLDKDGVFV-----GLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYAL 76
Cdd:COG1177 9 LRLFLALVLLFLYLPILVLVLYSFNDSWFLTFppegfTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 77 TRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLgvhvpiygavGIILAQIIYVFPQSFQILYISLSSTD 156
Cdd:COG1177 89 ARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW----------GLILAHVVFTLPFVVLVVLARLQGFD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 157 YRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPK-VIGGEFNVLSIDVYKQiIGQQNMPMGATVS 235
Cdd:COG1177 159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLfLAGPGVTTLPVYIYSM-IRRGISPEINALS 237
|
250
....*....|...
gi 544973550 236 ILLLIPAIISFIV 248
Cdd:COG1177 238 TLLILLSLLLLLL 250
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
9-254 |
9.33e-29 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 116.00 E-value: 9.33e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 9 LVIFLLAPIIYLFVQAFLDKDGV-----FVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRtKIKF 83
Cdd:COG1175 31 LLVFVLYPLLYTLYLSFTDWNLLgpppeFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 84 KGFFKSLAMLPMFAPTMmhAIGLVYLF---GNQGLVTNLLG-VHV--------PIYGAVGIILAQIIYVFPQSFQILYIS 151
Cdd:COG1175 110 RGFFRTLFFLPWVISPV--VVALIWKWlfnPDYGLLNALLGaLGLepinwlgdPSLALPAVIIVTVWKGTGFNMLIFLAG 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 152 LSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVI-----GGEFNVLSIDVYKQIIGQQ 226
Cdd:COG1175 188 LQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgggpGNSTTTLVLYIYQTAFQQF 267
|
250 260
....*....|....*....|....*....
gi 544973550 227 NMPMGATVS-ILLLIPAIISFIVTKKIEK 254
Cdd:COG1175 268 DFGYASAIAvVLFLIILVLTLLQLRLLRR 296
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
2-257 |
7.49e-24 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 100.98 E-value: 7.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 2 LTVLVMSLVIFLLAPIIYLFVQAFLdkdgvfVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKI 81
Cdd:COG0555 13 LGLTLLYLSLIVLLPLAALVLKAAG------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 82 KFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLL---GVHVpIYGAVGIILAQIIYVFPQSFQILYISLSSTDYR 158
Cdd:COG0555 87 PGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLaplGIKV-AFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 159 LYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEF----NVLSIDVYKQIIgQQNMPMGATV 234
Cdd:COG0555 166 LEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLpmktEILPLLIYLKLE-EGDYAGATAI 244
|
250 260
....*....|....*....|...
gi 544973550 235 SILLLIPAIISFIVTKKIEKNQN 257
Cdd:COG0555 245 ALVLLLISFLLLLLINLLQRRSR 267
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
42-248 |
1.94e-16 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 78.59 E-value: 1.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 42 LASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLL- 120
Cdd:TIGR01581 14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLe 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 121 --GVHVpIYGAVGIILAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCF 198
Cdd:TIGR01581 94 aaGIQV-IFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 544973550 199 TDFGAPKVIGGEF----NVLSIDVYKQIIgQQNMPMGATVSILLLIPAIISFIV 248
Cdd:TIGR01581 173 GEFGATLMFAGSIqgktRTLPLAIYLNIQ-SDNIEAAVASALLLLVIAFLLLLV 225
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
271-544 |
2.83e-15 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 75.92 E-value: 2.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 271 SNKLRDGVLGGIIGLIAFGIIAVMLTVILSSLISVWpyDLRLTLEHFSMK------NSIDGIKPFVNSIKMSLLTAILGT 344
Cdd:COG1177 1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSW--FLTFPPEGFTLRwyaelfSDPRLLDALLNSLLIALLSTLLAT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 345 SFVFLFAYLNEKTEKApyLKSFGYFLSTLPMALSGLVLGIAYVLFFNKLefnfmdtiyiknlfnGIYGTLLIMVICNIVH 424
Cdd:COG1177 79 VLGTPAALALARYRFR--GRRLLLALLLLPLVVPGIVLGVALLLLFSAL---------------GLSGGLWGLILAHVVF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 425 FFSVAFITATTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVLENFMYFFLNSM--VTISalVFIYTASSKVAAI 502
Cdd:COG1177 142 TLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFdeFVIT--LFLAGPGVTTLPV 219
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 544973550 503 SIVQLDDKGSTAQAAALAVLILVTNILVKVIYEFIKNRLEKR 544
Cdd:COG1177 220 YIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
2-248 |
2.98e-15 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 76.29 E-value: 2.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 2 LTVLVMSLVIFLLAPIIYLFVQAFLDKDGVFVG----------LQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALV 71
Cdd:COG0395 17 LYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGppsllpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 72 YAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLGVHVPiYGAVGIILAqiIYVFPQSFQILYIS 151
Cdd:COG0395 97 AAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILP-YLAFGLPFG--IFLLRQFFRSIPRE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 152 lsstdyrLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEFNVLSIDVY-KQIIGQQNMPM 230
Cdd:COG0395 174 -------LEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGlASFQGQYGTDW 246
|
250 260
....*....|....*....|
gi 544973550 231 G--ATVSILLLIPAIISFIV 248
Cdd:COG0395 247 GllMAAAVIATLPVLILFLF 266
|
|
| modB |
PRK09421 |
molybdate ABC transporter permease subunit; |
45-203 |
1.04e-12 |
|
molybdate ABC transporter permease subunit;
Pssm-ID: 181841 Cd Length: 229 Bit Score: 67.64 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 45 ESLLNSLKntifVSVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLGVHV 124
Cdd:PRK09421 9 QAVLLSLK----VSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 125 PI------YGAVgiiLAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCF 198
Cdd:PRK09421 85 GIsfafswRGAA---LAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161
|
....*
gi 544973550 199 TDFGA 203
Cdd:PRK09421 162 GEFGA 166
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
58-462 |
1.69e-10 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 63.40 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 58 SVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVT---NLLGV--HVPIYGAVGI 132
Cdd:TIGR01253 56 AFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLAtlaNLFGLewQFHIYGLQGI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 133 ILAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGG--E 210
Cdd:TIGR01253 136 LIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGgpQ 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 211 FNVLSIDVYKQIIGQQNMPMGATVSILLLIPAIISFIVTKKIEK-NQNSyiTSKSIPYKVKSNKLRDGVLGGIIGLIAfg 289
Cdd:TIGR01253 216 ATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSKaIANG--LSLLNGWFDPDDKLASKICDILLILLA-- 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 290 iIAVMLTVILSSLISVWPYDLRLTLEHFSMKnsidgIKPFVNSIKMSLLTAILGTSFVFLFAYLNEKTEKAPYLKSFGYF 369
Cdd:TIGR01253 292 -LFFLFPPLLAIIIDALNSRNLLEVLANPQL-----WQALGTSLRIALAAALLALTLAIALLLLSRELEALHKMKAGQFI 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 370 LST--LPMALSGLVLGIAYVLFFNKLEFNFMDtiyiknlfngiygTLLIMVICNIVHFFSVAFITATTAIKKVDKELDMV 447
Cdd:TIGR01253 366 EMAgmLILAIPGIVLAMGFFLLLNDRDFLNID-------------ADGIVIFCNALMAIPFALKILEAPFHDIMARYEML 432
|
410
....*....|....*
gi 544973550 448 AKSMGINSASILKNV 462
Cdd:TIGR01253 433 CNSLGIEGWQRFKLI 447
|
|
| PRK15050 |
PRK15050 |
2-aminoethylphosphonate transport system permease PhnU; Provisional |
9-238 |
4.65e-10 |
|
2-aminoethylphosphonate transport system permease PhnU; Provisional
Pssm-ID: 237888 [Multi-domain] Cd Length: 296 Bit Score: 60.79 E-value: 4.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 9 LVIFLLAPIIYLFVQAFLDKDGVfvGLQNFQEYLASESLLNSLKNTIFVSVIST----VISLTLALVYAYaltrtkIKFK 84
Cdd:PRK15050 35 LAPLVVYPLVRVVLQSLTGEHGL--GLATYRAVLGSPDFRGALLTTLQIAFASTagclVLGVLLALVLAF------VPFP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 85 G------FFKSLAMLPMFaptmMHAIGLVYLFGNQGLV----TNLLGVHVP----IYGAVGIILAQIIYVFPQSFQILYI 150
Cdd:PRK15050 107 GaslvgrFIDTFVAFPSF----LITLAFTFLYGSAGSVnialQRLFGLEAPpldfLYSPGGVILAEITFYTPFVVRPLLA 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 151 SLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGG-EFNVLSIDVYKQIIGQQNMP 229
Cdd:PRK15050 183 AFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAkDVVTLPVLIYSKAIVDFDYP 262
|
250
....*....|..
gi 544973550 230 ---MGATVSILL 238
Cdd:PRK15050 263 tacAIAVVNLAL 274
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
51-246 |
1.59e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 57.67 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 51 LKNTIFVSVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLGvhvpiYGAV 130
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPG-----LGLP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 131 GIILAqIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGE 210
Cdd:cd06261 76 ALILA-LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 544973550 211 FNVLSIDVYKQIIGQQNMPMGATVSILLLIPAIISF 246
Cdd:cd06261 155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
1-240 |
1.47e-08 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 56.23 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 1 MLTVLVMSLVIFLLAPIIYLFVQAFLDKDGV-FVGLQ-NFQEY------LASESLLNSLKntifVSVISTVISLTLALVY 72
Cdd:PRK09497 11 VIVTIVGWLVLFVFLPNLMIIGTSFLTRDDAnFVKMVfTLDNYtrlldpLYAEVLLHSLN----MALIATLACLVLGYPF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 73 AYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLG----VHVPI---YGAVGIILAQIIYVFPQSF 145
Cdd:PRK09497 87 AWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLwlgvIDTPIrimFTESAVIIGLVYILLPFMV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 146 QILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEFNVLSIDVYK-QIIG 224
Cdd:PRK09497 167 LPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKsQFLN 246
|
250
....*....|....*.
gi 544973550 225 QQNMPMGATVSILLLI 240
Cdd:PRK09497 247 IRDWPFGAATSITLTI 262
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
284-543 |
1.22e-07 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 53.22 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 284 GLIAFGIIAVMLTVILSSLISVWPYDLRLTLEHFSmknSIDGIKPFVNSIKMSLLTAILGTSFVFLFAYLnektekapyl 363
Cdd:COG0555 10 GLTLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFW---AVLTSPRVLAALKLSLGTALIAALINLVFGLP---------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 364 ksFGYFLS--------------TLPMALSGLVLGIAYVLFFNKLEF--NFMDTIYIKNLFNgIYGTLLIMVicnivhFFS 427
Cdd:COG0555 77 --LAWVLVryrfpgkrlvdalvDLPFALPTAVAGIALLLLFGPNGWlgQLLAPLGIKVAFT-PLGIVLAQT------FVS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 428 VAFI--TATTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVLENFMYFFLNSMVTISALVFIYTAS---SKVAAI 502
Cdd:COG0555 148 LPFVvrTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLpmkTEILPL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 544973550 503 SIVQLDDKGSTAQAAALAVLILVTNILVKVIYEFIKNRLEK 543
Cdd:COG0555 228 LIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQRRSRR 268
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
329-526 |
8.90e-07 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 49.58 E-value: 8.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 329 FVNSIKMSLLTAILGTSFVFLFAYLneKTEKAPYLKSFGYFLSTLPMALSGLVLGIAYVLFFNKLefnfmdtiyikNLFN 408
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGII--LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-----------LGWG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 409 GIYGTLLIMVICNIVHFFSVAFITATTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVLENFMYFFLNSMVTISA 488
Cdd:cd06261 68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147
|
170 180 190
....*....|....*....|....*....|....*...
gi 544973550 489 LVFIYTASSKVAAISIVQLDDKGSTAQAAALAVLILVT 526
Cdd:cd06261 148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALIL 185
|
|
| YnjC |
COG4135 |
ABC-type uncharacterized transport system YnjBCD, permease component [General function ... |
43-194 |
1.64e-06 |
|
ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];
Pssm-ID: 443310 [Multi-domain] Cd Length: 564 Bit Score: 50.64 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 43 ASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPtmmhaiGLVYLFGNQGLvTNLLGV 122
Cdd:COG4135 350 AAPGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVP------QIAFLFGLQVL-LLRLGL 422
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 544973550 123 HvpiYGAVGIILAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAFVSF 194
Cdd:COG4135 423 D---GTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGF 491
|
|
| thiP |
PRK09433 |
thiamine transporter membrane protein; Reviewed |
61-397 |
3.58e-06 |
|
thiamine transporter membrane protein; Reviewed
Pssm-ID: 181853 [Multi-domain] Cd Length: 525 Bit Score: 49.83 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 61 STVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQGLVTNLLGV-----HVPIYGAVGIILA 135
Cdd:PRK09433 56 SALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQAlglewPFSIYGLQGILLA 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 136 QIIYVFPQSFQILYISLSS--TDYRLYEASntMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDF-------GAPKv 206
Cdd:PRK09433 136 HVFFNLPLATRLLLQALESipAEQRQLAAQ--LGMRGWQFFRLVEWPYLRRQLPPVAALIFMLCFTSFatvltlgGGPK- 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 207 iggeFNVLSIDVYKQIIGQQNMPMGATVSILLLIPAIISFIVTKKIEKNQNSYITSKSIPYKVKSNKLRDGVLGGIIGLI 286
Cdd:PRK09433 213 ----ATTIELAIYQALSFDFDLARAALLALLQMVLCLGLVLLSQRLSKAIAVGATLLRGWRDPQDSLWSRLWDGLLIVLA 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 287 AFGIIAVMLTVILSSLISVWPYDLRltlehfsmkNSIdgikpFVNSIKMSLLTAILGTSFVFLFAY--LNEKTEKAPYLK 364
Cdd:PRK09433 289 LLLLLPPLLAVVVSGLNASLLRVLA---------QPA-----LWQALWTSLRIALAAALLAVVLTMmlLWSSRELRLRQR 354
|
330 340 350
....*....|....*....|....*....|....*..
gi 544973550 365 SFGY----FLSTLPMALSGLVLGIAYVLFFNKLEFNF 397
Cdd:PRK09433 355 KLAAqaleLSGMLILAMPGIVLATGLFLLLRNTTDLP 391
|
|
| cysW |
PRK11602 |
sulfate/thiosulfate ABC transporter permease CysW; |
10-248 |
5.82e-06 |
|
sulfate/thiosulfate ABC transporter permease CysW;
Pssm-ID: 183225 Cd Length: 283 Bit Score: 48.21 E-value: 5.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 10 VIFLLAPIIYLFVQAFldKDGVFVGLQNfqeyLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKIKFKGFFKS 89
Cdd:PRK11602 31 AFILVVPMIYIFVQAF--SKGLMPVLQN----LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLT 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 90 LAMLPmFAPTMMHAiGLVYL--FGNQGLVTNLLGVH--VPIYGAVGIILAQIIYVFPQSFQILYISLSSTDYRLYEASNT 165
Cdd:PRK11602 105 LLDIP-FAVSPVVA-GLVYLlfYGSNGPLGGWLDEHnlQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAIL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 166 MGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGGEF--NVLSIDVYKQIIGQQNMPMGA-TVSILLLIPA 242
Cdd:PRK11602 183 LGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIrgETLSLPLQIELLEQDYNTVGSfTAAALLTLMA 262
|
....*.
gi 544973550 243 IISFIV 248
Cdd:PRK11602 263 IITLFL 268
|
|
| thiP |
TIGR01253 |
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ... |
3-244 |
1.47e-04 |
|
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]
Pssm-ID: 130320 [Multi-domain] Cd Length: 519 Bit Score: 44.52 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 3 TVLVMSLVIFLLAPIIYLFVQAfldkdgvfVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTR---- 78
Cdd:TIGR01253 285 ILLILLALFFLFPPLLAIIIDA--------LNSRNLLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLLSREleal 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 79 TKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQglvtnllgVHVPIYGAVGIILAQIIYVFPQSFQILYISLSSTDYR 158
Cdd:TIGR01253 357 HKMKAGQFIEMAGMLILAIPGIVLAMGFFLLLNDR--------DFLNIDADGIVIFCNALMAIPFALKILEAPFHDIMAR 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 159 LYEASNTMGISKIREFISITIPSIKYSLISSAFVSFTLCFTDFGAPKVIGG-EFNVLSIDVYKQIIGQQNMPMGATVSIL 237
Cdd:TIGR01253 429 YEMLCNSLGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNdDFRSLPFLLYQQIGNYRNQDAAVTAGIL 508
|
....*..
gi 544973550 238 LLIPAII 244
Cdd:TIGR01253 509 LLLCFIL 515
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
32-182 |
1.86e-04 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 43.66 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 32 FVGLQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAyALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFG 111
Cdd:PRK10561 38 FVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFA-ALVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFN 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 112 -NQGLVTNLLGV------HVPIYGAVG--IILAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSI 182
Cdd:PRK10561 117 pGRGLITHFLAEfgydwnHAQNSGQAMflVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLI 196
|
|
| PRK10971 |
PRK10971 |
sulfate/thiosulfate ABC transporter permease CysT; |
35-209 |
9.97e-04 |
|
sulfate/thiosulfate ABC transporter permease CysT;
Pssm-ID: 182873 Cd Length: 277 Bit Score: 41.28 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 35 LQNFQEYLASESLLNSLKNTIFVSVISTVISLTLALVYAYALTRTKIKFKGFFKSLAMLPMFAPTMMHAIGLVYLFGNQG 114
Cdd:PRK10971 44 WAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 115 LVTNLL---GVHVpIYGAVGIILAQIIYVFPQSFQILYISLSSTDYRLYEASNTMGISKIREFISITIPSIKYSLISSAF 191
Cdd:PRK10971 124 WYGEWLakfDIKV-TYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVA 202
|
170
....*....|....*...
gi 544973550 192 VSFTLCFTDFGAPKVIGG 209
Cdd:PRK10971 203 LSFTRSLGEFGAVIFIAG 220
|
|
| YnjC |
COG4135 |
ABC-type uncharacterized transport system YnjBCD, permease component [General function ... |
279-472 |
1.46e-03 |
|
ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];
Pssm-ID: 443310 [Multi-domain] Cd Length: 564 Bit Score: 41.39 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 279 LGGIIGLIAFGIIAVMLTVILS-SLISVWPY-DL---RLTLEHFsMKNSIDGIKPFVNSIKMSLLTAILGTSFVfLFAYL 353
Cdd:COG4135 304 LGLALMLLIALLSLLGLALLLLwSFAGRWRFpDAlpsSWTLRFW-QRAAPGLLEPLGNTLLLALASALIALVLV-LACLE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544973550 354 NEKTEKAPYLKSFGYFLStLPMalsgLVLGIAyvlffnklefnFMDTIYIKNLFNGIYGTLLIMVICNIVHFFSVAFITA 433
Cdd:COG4135 382 AEARRGRRPGRRALWLLY-LPL----LVPQIA-----------FLFGLQVLLLRLGLDGTWLAVIWAHLVFVLPYVFLSL 445
|
170 180 190
....*....|....*....|....*....|....*....
gi 544973550 434 TTAIKKVDKELDMVAKSMGINSASILKNVTIPLCLPAVL 472
Cdd:COG4135 446 AGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPIL 484
|
|
| |
