type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral ...
10-379
0e+00
type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral pathogen Porphyromonas gingivalis, is a component of the type IX secretion system (T9SS) needed to process a subset of T9SS substrates. PorV is a paralog of PorQ.
:
Pssm-ID: 468148 Cd Length: 368 Bit Score: 530.12 E-value: 0e+00
type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral ...
10-379
0e+00
type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral pathogen Porphyromonas gingivalis, is a component of the type IX secretion system (T9SS) needed to process a subset of T9SS substrates. PorV is a paralog of PorQ.
Pssm-ID: 468148 Cd Length: 368 Bit Score: 530.12 E-value: 0e+00
PorV/PorQ family protein; Proteins closely related to PorV, and its paralog PorQ, are found ...
35-379
2.06e-142
PorV/PorQ family protein; Proteins closely related to PorV, and its paralog PorQ, are found regularly in species with type IX secretion systems (T9SS), the system associated with a type of gliding motility in many of the Bacteroidetes.
Pssm-ID: 468147 Cd Length: 327 Bit Score: 407.73 E-value: 2.06e-142
Type IX secretion system protein PorV; This entry represents the PorV protein. The ...
26-265
4.68e-60
Type IX secretion system protein PorV; This entry represents the PorV protein. The Bacteroidete T9SS contains at least 15 proteins. PorQ, PorU, PorV and PorZ form a cell surface-exposed attachment complex that proteolytically removes the substrate CTD following transport and covalently links some substrate proteins to a lipopolysaccharide anchor. A pool of PorV proteins in the outer membrane is thought to shuttle substrate proteins from the translocon to the attachment complex. The PorV protein has a membrane beta barrel topology.
Pssm-ID: 437404 Cd Length: 243 Bit Score: 194.32 E-value: 4.68e-60
type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral ...
10-379
0e+00
type IX secretion system outer membrane channel protein PorV; PorV, as characterized in oral pathogen Porphyromonas gingivalis, is a component of the type IX secretion system (T9SS) needed to process a subset of T9SS substrates. PorV is a paralog of PorQ.
Pssm-ID: 468148 Cd Length: 368 Bit Score: 530.12 E-value: 0e+00
PorV/PorQ family protein; Proteins closely related to PorV, and its paralog PorQ, are found ...
35-379
2.06e-142
PorV/PorQ family protein; Proteins closely related to PorV, and its paralog PorQ, are found regularly in species with type IX secretion systems (T9SS), the system associated with a type of gliding motility in many of the Bacteroidetes.
Pssm-ID: 468147 Cd Length: 327 Bit Score: 407.73 E-value: 2.06e-142
Type IX secretion system protein PorV; This entry represents the PorV protein. The ...
26-265
4.68e-60
Type IX secretion system protein PorV; This entry represents the PorV protein. The Bacteroidete T9SS contains at least 15 proteins. PorQ, PorU, PorV and PorZ form a cell surface-exposed attachment complex that proteolytically removes the substrate CTD following transport and covalently links some substrate proteins to a lipopolysaccharide anchor. A pool of PorV proteins in the outer membrane is thought to shuttle substrate proteins from the translocon to the attachment complex. The PorV protein has a membrane beta barrel topology.
Pssm-ID: 437404 Cd Length: 243 Bit Score: 194.32 E-value: 4.68e-60
Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from ...
180-386
1.72e-03
Outer membrane protein transport protein (OMPP1/FadL/TodX); This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.
Pssm-ID: 427255 [Multi-domain] Cd Length: 421 Bit Score: 40.08 E-value: 1.72e-03
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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of your query sequence and the protein sequences used to curate the domain model,
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The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits
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Domains are color coded according to superfamilies
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Others (non-specific hits) and
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if a domain or superfamily has been annotated with functional sites (conserved features),
they are mapped to the query sequence and indicated through sets of triangles
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
mapped to the query sequence.
Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
(illustrated example)
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the
advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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