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Conserved domains on  [gi|549799191|ref|WP_022562620|]
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MULTISPECIES: LLM class flavin-dependent oxidoreductase [Rhizobium/Agrobacterium group]

Protein Classification

LLM class flavin-dependent oxidoreductase( domain architecture ID 10023993)

LLM (luciferase-like monooxygenase) class flavin-dependent oxidoreductase transfers one oxygen atom of an oxygen molecule to a substrate while reducing the other oxygen atom to water

CATH:  3.20.20.30
EC:  1.-.-.-
Gene Ontology:  GO:0010181|GO:0016491
PubMed:  24361254|33460580
SCOP:  3000585

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


:

Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 665.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191    9 LGAFMRPVSLHTGAWRYPGAFPDANFNFAHLARFAQQLEAAKFDAFFMADHLAVLNMPTEALRRSHTVTSFEPFTLLSAL 88
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDVPDAALRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   89 AAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRDDQPDHAERYGRAREFYDVVTGLW 168
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  169 DSFSDDAFIRDVDSGLFFDPEKMHVLNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTLAA 248
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  249 GKAFYKDVKDRTVAAGRSRDGIVILPGAFVLVGDTVEEAKAKRARLDSLVHYESAIASLSIALGHDVSGFDPDAPLPDIP 328
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLPDLP 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  329 ETNASKSSRERVIELARSEGLTVRQLAQRL-GGYAGLAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLPAGLDDFTTLV 407
Cdd:TIGR03860 321 TEAGQKSRFDLILELARRENLTLRQLALRLaGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLV 400
                         410       420
                  ....*....|....*....|..
gi 549799191  408 VPELQKRGLFRTDYEGPTLRDH 429
Cdd:TIGR03860 401 VPELQRRGLFRTEYEGGTLREH 422
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 665.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191    9 LGAFMRPVSLHTGAWRYPGAFPDANFNFAHLARFAQQLEAAKFDAFFMADHLAVLNMPTEALRRSHTVTSFEPFTLLSAL 88
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDVPDAALRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   89 AAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRDDQPDHAERYGRAREFYDVVTGLW 168
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  169 DSFSDDAFIRDVDSGLFFDPEKMHVLNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTLAA 248
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  249 GKAFYKDVKDRTVAAGRSRDGIVILPGAFVLVGDTVEEAKAKRARLDSLVHYESAIASLSIALGHDVSGFDPDAPLPDIP 328
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLPDLP 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  329 ETNASKSSRERVIELARSEGLTVRQLAQRL-GGYAGLAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLPAGLDDFTTLV 407
Cdd:TIGR03860 321 TEAGQKSRFDLILELARRENLTLRQLALRLaGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLV 400
                         410       420
                  ....*....|....*....|..
gi 549799191  408 VPELQKRGLFRTDYEGPTLRDH 429
Cdd:TIGR03860 401 VPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
7-417 7.91e-168

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 475.66  E-value: 7.91e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   7 LHLGAFMRPVSLHTGAWRYPGAfPDANFNFAHLARFAQQLEAAKFDAFFMADHLAVLnmpteALRRSHTVTSFEPFTLLS 86
Cdd:cd01095    1 LHLGAFLHGAGHHAAAWRHPAP-PDASIDFDHYVRLARTAERAKFDAVFLADGLAIR-----ALSRPHPVARLEPLTLLA 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  87 ALAAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRDDQPDHAERYGRAREFYDVVTG 166
Cdd:cd01095   75 ALAAVTERIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKG 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 167 LWDSFSDDAFIRDVDSGLFFDPEKMHVLNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTL 246
Cdd:cd01095  155 LWDSWEDDALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTL 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 247 AAGKAFYKDVKDRTVAAGRsrdgivilpgafvlvgdtveeakakrarldslvhyesaiaslsialghdvsgfdPDAPLPD 326
Cdd:cd01095  235 EEAQAFYADVKARAAAAGR------------------------------------------------------LDPPPPD 260
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 327 IPETNASKSSRER-------VIELARSEGLTVRQLAQRLGGYAGLAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLPAG 399
Cdd:cd01095  261 LPDLGSRLSASRLlladllaRGGLHRREVGTAREVADRLERAAGGGTVVGPEQIADELEEWFEAGAADGFNIMPPYLPGG 340
                        410
                 ....*....|....*...
gi 549799191 400 LDDFTTLVVPELQKRGLF 417
Cdd:cd01095  341 LDDFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-413 1.99e-73

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 232.52  E-value: 1.99e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  47 EAAKFDAFFMADHLavlnmptealrRSHTVTSFEPFTLLSALAAVTQRIGL-VATASTTFDEPYHVARRFASLDHLSNGR 125
Cdd:COG2141    2 ERLGFDRVWVADHH-----------FPPGGASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGR 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 126 AGWNIVTTSNPDAARNFGRDdqpdHAERYGRAREFYDVVTGLWDSfsddafirdvdsglffdpekmHVLNHRGPEFSVRG 205
Cdd:COG2141   71 LDLGVGRGWGPDEFAAFGLD----HDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEG 125
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 206 PLNIARPVQGW-PVIVQAGASEPGRQLAAETAEVVFAATPTLAAGKAFYKDVKDRTVAAGRSRDGIVILPGAFVLVGDTV 284
Cdd:COG2141  126 ARLVPRPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETD 205
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 285 EEAKAK-RARLDSLVHYEsaiaslsialghdvSGFDPDaplpdipETNASKSSRERVIELarsegltvrqlaqrlggyAG 363
Cdd:COG2141  206 EEARERaRPYLRALLALP--------------RGRPPE-------EAEEGLTVREDLLEL------------------LG 246
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 549799191 364 LAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLP-----AGLDDFTTLVVPELQK 413
Cdd:COG2141  247 AALVGTPEQVAERLEELAEAAGVDEFLLQFPGLDpedrlRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
19-380 6.87e-44

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 155.98  E-value: 6.87e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   19 HTGAWRYPGAFPdanfnFAHLARFAQQLEAAKFDAFFMADHLavlnmptealrrsHTVTSFEPFTLLSALAAVTQRIGLV 98
Cdd:pfam00296  10 RNGGGLGAGSES-----LRYLVELARAAEELGFDGVWLAEHH-------------GGPGGPDPFVVLAALAAATSRIRLG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   99 ATASTTFD-EPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRddqpDHAERYGRAREFYDVVTGLWDsfsddafi 177
Cdd:pfam00296  72 TAVVPLPTrHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFGV----DHDERYARLREFLEVLRRLWR-------- 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  178 rdvdsglffdpekMHVLNHRGPEFSVRGPLNIARPVQGWPVIVqAGASEPGRQLAAETAEVVFAATPT-LAAGKAFYKDV 256
Cdd:pfam00296 140 -------------GEPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFApPAAAAELIERV 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  257 KDRTVAAGRSRDGIVILPGAFVLVGDTVEEAKAKRARLdslvhyesaiaslsialghdvsgFDPDAPLPDIPETNASKSS 336
Cdd:pfam00296 206 RAGAAEAGRDPADIRVGASLTVIVADTEEEARAEARAL-----------------------IAGLPFYRMDSEGAGRLAE 262
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 549799191  337 RERVIELARSEGLTVRQLAQRLGGYAGLAFVGTPKTIADEMEQW 380
Cdd:pfam00296 263 AREIGEEYDAGDWAGAADAVPDELVRAFALVGTPEQVAERLAAY 306
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
80-296 1.94e-11

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 65.36  E-value: 1.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  80 EPFTLLSALAAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSnpDAARNFGRDDQPDHAERYGRARE 159
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGG--DPAELAGDGLFLDHDERYEASAE 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 160 FYDVvtglWdsfsddafiRDVDSGLFFDPEKMHVlnhrgpefSVRGPLNIARPVQ-GWPVIVQAGASEPGRQLAAETAEV 238
Cdd:PRK00719 133 FLRI----W---------RRLLEGETVDFEGKHI--------QVKGAKLLFPPVQqPYPPLYFGGSSDAAQELAAEQVDL 191
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 549799191 239 VFAATPTLAAGKAFYKDVKDRTVAAGRS-RDGI---VIL--------PGAFVLVG----DTVEEAKAKRARLDS 296
Cdd:PRK00719 192 YLTWGEPPAQVKEKIEQVRAKAAAHGRKvRFGIrlhVIVretneeawQAAERLIShlddETIARAQAAFARMDS 265
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-429 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 665.36  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191    9 LGAFMRPVSLHTGAWRYPGAFPDANFNFAHLARFAQQLEAAKFDAFFMADHLAVLNMPTEALRRSHTVTSFEPFTLLSAL 88
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDVPDAALRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   89 AAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRDDQPDHAERYGRAREFYDVVTGLW 168
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDEHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  169 DSFSDDAFIRDVDSGLFFDPEKMHVLNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTLAA 248
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  249 GKAFYKDVKDRTVAAGRSRDGIVILPGAFVLVGDTVEEAKAKRARLDSLVHYESAIASLSIALGHDVSGFDPDAPLPDIP 328
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTGIDLSQYDLDAPLPDLP 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  329 ETNASKSSRERVIELARSEGLTVRQLAQRL-GGYAGLAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLPAGLDDFTTLV 407
Cdd:TIGR03860 321 TEAGQKSRFDLILELARRENLTLRQLALRLaGGRGHPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFVDLV 400
                         410       420
                  ....*....|....*....|..
gi 549799191  408 VPELQKRGLFRTDYEGPTLRDH 429
Cdd:TIGR03860 401 VPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
7-417 7.91e-168

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 475.66  E-value: 7.91e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   7 LHLGAFMRPVSLHTGAWRYPGAfPDANFNFAHLARFAQQLEAAKFDAFFMADHLAVLnmpteALRRSHTVTSFEPFTLLS 86
Cdd:cd01095    1 LHLGAFLHGAGHHAAAWRHPAP-PDASIDFDHYVRLARTAERAKFDAVFLADGLAIR-----ALSRPHPVARLEPLTLLA 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  87 ALAAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRDDQPDHAERYGRAREFYDVVTG 166
Cdd:cd01095   75 ALAAVTERIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDEHPEHDERYARAEEFVEVVKG 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 167 LWDSFSDDAFIRDVDSGLFFDPEKMHVLNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTL 246
Cdd:cd01095  155 LWDSWEDDALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTL 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 247 AAGKAFYKDVKDRTVAAGRsrdgivilpgafvlvgdtveeakakrarldslvhyesaiaslsialghdvsgfdPDAPLPD 326
Cdd:cd01095  235 EEAQAFYADVKARAAAAGR------------------------------------------------------LDPPPPD 260
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 327 IPETNASKSSRER-------VIELARSEGLTVRQLAQRLGGYAGLAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLPAG 399
Cdd:cd01095  261 LPDLGSRLSASRLlladllaRGGLHRREVGTAREVADRLERAAGGGTVVGPEQIADELEEWFEAGAADGFNIMPPYLPGG 340
                        410
                 ....*....|....*...
gi 549799191 400 LDDFTTLVVPELQKRGLF 417
Cdd:cd01095  341 LDDFVDLVVPELQRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
47-413 1.99e-73

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 232.52  E-value: 1.99e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  47 EAAKFDAFFMADHLavlnmptealrRSHTVTSFEPFTLLSALAAVTQRIGL-VATASTTFDEPYHVARRFASLDHLSNGR 125
Cdd:COG2141    2 ERLGFDRVWVADHH-----------FPPGGASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGR 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 126 AGWNIVTTSNPDAARNFGRDdqpdHAERYGRAREFYDVVTGLWDSfsddafirdvdsglffdpekmHVLNHRGPEFSVRG 205
Cdd:COG2141   71 LDLGVGRGWGPDEFAAFGLD----HDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEG 125
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 206 PLNIARPVQGW-PVIVQAGASEPGRQLAAETAEVVFAATPTLAAGKAFYKDVKDRTVAAGRSRDGIVILPGAFVLVGDTV 284
Cdd:COG2141  126 ARLVPRPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETD 205
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 285 EEAKAK-RARLDSLVHYEsaiaslsialghdvSGFDPDaplpdipETNASKSSRERVIELarsegltvrqlaqrlggyAG 363
Cdd:COG2141  206 EEARERaRPYLRALLALP--------------RGRPPE-------EAEEGLTVREDLLEL------------------LG 246
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 549799191 364 LAFVGTPKTIADEMEQWLHEEGSDGFNVTFPFLP-----AGLDDFTTLVVPELQK 413
Cdd:COG2141  247 AALVGTPEQVAERLEELAEAAGVDEFLLQFPGLDpedrlRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
19-380 6.87e-44

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 155.98  E-value: 6.87e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   19 HTGAWRYPGAFPdanfnFAHLARFAQQLEAAKFDAFFMADHLavlnmptealrrsHTVTSFEPFTLLSALAAVTQRIGLV 98
Cdd:pfam00296  10 RNGGGLGAGSES-----LRYLVELARAAEELGFDGVWLAEHH-------------GGPGGPDPFVVLAALAAATSRIRLG 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   99 ATASTTFD-EPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGRddqpDHAERYGRAREFYDVVTGLWDsfsddafi 177
Cdd:pfam00296  72 TAVVPLPTrHPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFGV----DHDERYARLREFLEVLRRLWR-------- 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  178 rdvdsglffdpekMHVLNHRGPEFSVRGPLNIARPVQGWPVIVqAGASEPGRQLAAETAEVVFAATPT-LAAGKAFYKDV 256
Cdd:pfam00296 140 -------------GEPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFApPAAAAELIERV 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  257 KDRTVAAGRSRDGIVILPGAFVLVGDTVEEAKAKRARLdslvhyesaiaslsialghdvsgFDPDAPLPDIPETNASKSS 336
Cdd:pfam00296 206 RAGAAEAGRDPADIRVGASLTVIVADTEEEARAEARAL-----------------------IAGLPFYRMDSEGAGRLAE 262
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 549799191  337 RERVIELARSEGLTVRQLAQRLGGYAGLAFVGTPKTIADEMEQW 380
Cdd:pfam00296 263 AREIGEEYDAGDWAGAADAVPDELVRAFALVGTPEQVAERLAAY 306
Alkanesulfonate_monoxygenase cd01094
Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the ...
18-293 6.47e-38

Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).


Pssm-ID: 238527 [Multi-domain]  Cd Length: 244  Bit Score: 137.79  E-value: 6.47e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  18 LHTGAWRYPGAFPDANFNFAHLARFAQQLEAAKFDAffmadhlavlnmpteALRRSHTvTSFEPFTLLSALAAVTQRIGL 97
Cdd:cd01094    9 NVSGGWSLSTPPRGRPWDFEYNRQIAQAAEELGFDG---------------ALSPTGS-SGPDGWTVAAALAAATERLKF 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  98 VATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSNPDAARNFGrdDQPDHAERYGRAREFYDVVTGLWDSfsddafi 177
Cdd:cd01094   73 LVAIRPGLIAPTVAARQAATLDHISGGRLGLNVVTGGDPAELRMDG--DFLDHDERYARADEFLEVLRRLWTS------- 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 178 rdvDSGLFFdpekmhvlnHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTLAAGKAFYKDVK 257
Cdd:cd01094  144 ---DEPFDF---------EGKFYRFKNAFLRPKPPQQPHPPIYFGGSSEAAIEFAARHADVYFTWGEPPAQVAEAIARVR 211
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 549799191 258 DRTVAAGRSRDGIVILpgaFVLVGDTVEEAKAKRAR 293
Cdd:cd01094  212 AAAAAAGRDVRFGIRL---HVIVRDTEEEAWAYADR 244
F420_Rv2161c TIGR03619
probable F420-dependent oxidoreductase, Rv2161c family; Coenzyme F420 has a limited ...
40-299 1.59e-16

probable F420-dependent oxidoreductase, Rv2161c family; Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274680 [Multi-domain]  Cd Length: 246  Bit Score: 78.84  E-value: 1.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191   40 ARFAQQLEAAKFDAFFMADHLAVLNMPTEALRRSHTVTSF----EPFTLLSALAAVTQRIGLV-ATASTTFDEPYHVARR 114
Cdd:TIGR03619   1 AELARAAEELGFDSLLAYEHVAIPARRETPWPDSGGGDAPdrtlDPFVALAFAAAVTSRLRLGtGVLVLPQRDPLLLAKQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  115 FASLDHLSNGR------AGWnivttsNPDAARNFGRddqpDHAERYGRAREFYDVVTGLWdsfSDDAFirdvdsglffdp 188
Cdd:TIGR03619  81 AATLDLLSGGRlrlgvgVGW------LREEFRALGV----DFDERGRLLDEAIEALRALW---TQDPV------------ 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  189 ekmhvlNHRGPEFSVRGPLNIARPVQGWPVIVQAGASEPGRQLAAETAEVVFAATPTLAAGKAFYKDVKDRTVAAGRSRD 268
Cdd:TIGR03619 136 ------SFHGEFVDFDPAVVRPKPVQRPPPIWIGGNSEAALRRAARLGDGWMPFGPPVDRLAAAVARLRDLAAAAGRDPD 209
                         250       260       270
                  ....*....|....*....|....*....|.
gi 549799191  269 GIVILPGAFVLVGDtveeAKAKRARLDSLVH 299
Cdd:TIGR03619 210 AVEVVLVRTDPDGD----ADADAEDLAAYAD 236
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
80-296 1.94e-11

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 65.36  E-value: 1.94e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191  80 EPFTLLSALAAVTQRIGLVATASTTFDEPYHVARRFASLDHLSNGRAGWNIVTTSnpDAARNFGRDDQPDHAERYGRARE 159
Cdd:PRK00719  55 DAWLVAASLIPVTQRLKFLVALRPGLMSPTVAARMAATLDRLSNGRLLINLVTGG--DPAELAGDGLFLDHDERYEASAE 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549799191 160 FYDVvtglWdsfsddafiRDVDSGLFFDPEKMHVlnhrgpefSVRGPLNIARPVQ-GWPVIVQAGASEPGRQLAAETAEV 238
Cdd:PRK00719 133 FLRI----W---------RRLLEGETVDFEGKHI--------QVKGAKLLFPPVQqPYPPLYFGGSSDAAQELAAEQVDL 191
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 549799191 239 VFAATPTLAAGKAFYKDVKDRTVAAGRS-RDGI---VIL--------PGAFVLVG----DTVEEAKAKRARLDS 296
Cdd:PRK00719 192 YLTWGEPPAQVKEKIEQVRAKAAAHGRKvRFGIrlhVIVretneeawQAAERLIShlddETIARAQAAFARMDS 265
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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