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Conserved domains on  [gi|549800060|ref|WP_022563489|]
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MULTISPECIES: ABC transporter permease subunit [Agrobacterium]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 15-256 1.39e-103

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK11365:

Pssm-ID: 444901  Cd Length: 263  Bit Score: 301.47  E-value: 1.39e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  15 WLLPALILAGWEVAARAGVISANVLPAPSAVAEAFWRLLLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSKFSR 94
Cdd:PRK11365  15 WFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  95 SFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVIL 174
Cdd:PRK11365  95 RLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVIL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 175 PGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQWHP 254
Cdd:PRK11365 175 PGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNP 254


                 ..
gi 549800060 255 AF 256
Cdd:PRK11365 255 AY 256
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
15-256 1.39e-103

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 301.47  E-value: 1.39e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  15 WLLPALILAGWEVAARAGVISANVLPAPSAVAEAFWRLLLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSKFSR 94
Cdd:PRK11365  15 WFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  95 SFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVIL 174
Cdd:PRK11365  95 RLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVIL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 175 PGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQWHP 254
Cdd:PRK11365 175 PGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNP 254


                 ..
gi 549800060 255 AF 256
Cdd:PRK11365 255 AY 256
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-253 3.95e-80

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 241.59  E-value: 3.95e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  12 IIGWLLPALILAGWEVAARAGVISANVLPAPSAVAEAFWRLLLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSK 91
Cdd:COG0600   13 LLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  92 FSRSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRR 171
Cdd:COG0600   93 LLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 172 VILPGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQ 251
Cdd:COG0600  173 VVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLR 252


                 ..
gi 549800060 252 WH 253
Cdd:COG0600  253 WR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 78-246 9.71e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 73.10  E-value: 9.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060   78 SIGFIFGLANGLSKFSRSFTDTTLQMIRNIPHLALIPLVIL-----WFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDP 152
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  153 QLVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLID----VVVLSI 228
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170
                  ....*....|....*...
gi 549800060  229 LIYALLGKLADSFARFLE 246
Cdd:pfam00528 161 LILLLLNLLVDILQRLLD 178
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-237 1.37e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  62 IGVSSARALAGFAIGGSIGFIFGLANGLSKFS-RSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLF---------LV 131
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKlDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 132 ALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETISSSS----G 207
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 549800060 208 LGYMAMQAREFLLIDVVVLSILIYALLGKL 237
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
15-256 1.39e-103

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 301.47  E-value: 1.39e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  15 WLLPALILAGWEVAARAGVISANVLPAPSAVAEAFWRLLLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSKFSR 94
Cdd:PRK11365  15 WFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  95 SFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVIL 174
Cdd:PRK11365  95 RLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVIL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 175 PGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQWHP 254
Cdd:PRK11365 175 PGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNP 254


                 ..
gi 549800060 255 AF 256
Cdd:PRK11365 255 AY 256
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 12-253 3.95e-80

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 241.59  E-value: 3.95e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  12 IIGWLLPALILAGWEVAARAGVISANVLPAPSAVAEAFWRLLLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSK 91
Cdd:COG0600   13 LLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  92 FSRSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRR 171
Cdd:COG0600   93 LLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRK 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 172 VILPGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQ 251
Cdd:COG0600  173 VVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLERRLLR 252


                 ..
gi 549800060 252 WH 253
Cdd:COG0600  253 WR 254
PRK10160 PRK10160
taurine ABC transporter permease TauC;
19-253 1.51e-37

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 132.99  E-value: 1.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  19 ALILAGWEVAARAGVISANVLPAPSAVAEAFWRL-----LLSGELLANIGVSSARALAGFAIGGSIGFIFGLANGLSKFS 93
Cdd:PRK10160  32 AVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIagpqgFMDATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  94 RSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVI 173
Cdd:PRK10160 112 RGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVI 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 174 LPGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADSFARFLESIFLQWH 253
Cdd:PRK10160 192 LPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWH 271
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 78-246 9.71e-16

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 73.10  E-value: 9.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060   78 SIGFIFGLANGLSKFSRSFTDTTLQMIRNIPHLALIPLVIL-----WFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDP 152
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  153 QLVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETISSSSGLGYMAMQAREFLLID----VVVLSI 228
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPeiqgPVLAAA 160

                         170
                  ....*....|....*...
gi 549800060  229 LIYALLGKLADSFARFLE 246
Cdd:pfam00528 161 LILLLLNLLVDILQRLLD 178
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 74-237 1.88e-13

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 67.39  E-value: 1.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  74 AIGGSIGFIFGLANGLSKFSRSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQ 153
Cdd:COG1174   32 LIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPA 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 154 LVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETIsSSSGLGYM-----AMQAREFLL---IDVVV 225
Cdd:COG1174  112 VVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALI-GAGGLGDLifdglQLNNTALILagaILVAL 190

                        170
                 ....*....|..
gi 549800060 226 LSILIYALLGKL 237
Cdd:COG1174  191 LALLVDLLLALL 202
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-237 1.37e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 56.13  E-value: 1.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  62 IGVSSARALAGFAIGGSIGFIFGLANGLSKFS-RSFTDTTLQMIRNIPHLALIPLVILWFGIDEEAKLF---------LV 131
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKlDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 132 ALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETISSSS----G 207
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 549800060 208 LGYMAMQAREFLLIDVVVLSILIYALLGKL 237
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
112-214 2.28e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 45.08  E-value: 2.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 112 LIPLVILwFGIDEEAKLFLVALGVFFPIYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALgI 191
Cdd:PRK10952 197 LVPIVML-FGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTL-M 274

                         90       100
                 ....*....|....*....|...
gi 549800060 192 MWLTLIVAETISSSSGLGYMAMQ 214
Cdd:PRK10952 275 LALSMVVIASMIAVGGLGQMVLR 297
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 135-185 2.73e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 44.36  E-value: 2.73e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 549800060 135 VFFPIYINTLLG-IQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTGL 185
Cdd:COG0555  146 VSLPFVVRTVQPvLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGF 197
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
56-217 3.76e-05

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 43.57  E-value: 3.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  56 GELLANIGVSSARALAGFAIGGSIGFIFGLANgLSKFS--RSFTDTTLQMIRNIPHLALIPLVIL-----------WFGI 122
Cdd:COG4215   16 PALLAGALVTLELALLSLLLGLVLGLLGALAK-LSGNRplRWLATGYTTVVRGVPDLLLILLLYFggqillnaladLFGY 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 123 DE--EAKLFL---VALGVFFPIYI-NTLLG-IQGVDPQLVEMGRTYGMSPFTLFRRVILPGAlpaiftgLRYAL---GIM 192
Cdd:COG4215   95 DGfiEINPFVagvLALGFVFGAYAtEVFRGaFLAVPKGQIEAARAYGMSRWQVFRRILLPQM-------WRYALpglGNN 167

                        170       180
                 ....*....|....*....|....*
gi 549800060 193 WLTLIVAETISSSSGLGYMAMQARE 217
Cdd:COG4215  168 WLVLLKDTALVSVIGLVDLVRQAQE 192
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 146-178 2.26e-04

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 41.23  E-value: 2.26e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 549800060 146 GIQGVDPQLVEMGRTYGMSPFTLFRRVILPGAL 178
Cdd:COG4160  117 AIRAVPKGEIEAARALGMSRWQTFRRIILPSAL 149
PRK15069 PRK15069
histidine ABC transporter permease HisM;
155-178 4.40e-04

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 40.42  E-value: 4.40e-04
                         10        20
                 ....*....|....*....|....
gi 549800060 155 VEMGRTYGMSPFTLFRRVILPGAL 178
Cdd:PRK15069 133 IEAARAYGMSTFKLYRRIILPSAL 156
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
135-185 6.42e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.53  E-value: 6.42e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 549800060 135 VFFP-IYINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTGL 185
Cdd:COG1178  149 FNYPyVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGA 200
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 154-233 1.64e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 39.44  E-value: 1.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 154 LVEMGRTYGMSPFTLFRRVILPGALPAIFTGLRYALGIMWLTLIVAETIS------SSSGLG-YMAM--QAREF--LLID 222
Cdd:COG4986  467 LREAARNFGLRGWLWWRRLILPGIFPYYVTGAITASGGAWNASIVAEYVSwgdttlQATGLGaYIAQatAAGDFprILLG 546

                         90
                 ....*....|.
gi 549800060 223 VVVLSILIYAL 233
Cdd:COG4986  547 IAVMSLFVVLF 557
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 147-184 1.79e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 38.81  E-value: 1.79e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 549800060 147 IQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTG 184
Cdd:PRK09500 150 LKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 49-181 2.19e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 38.13  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060  49 FWRLLLSGeLLANIGVSsaraLAGFAIGGSIGFIFGLANGL-SKFSRSFTDTTLQMIRNIPhlALIPLVILWFGideeak 127
Cdd:COG0765   11 YLPLLLEG-LLVTLLLT----VLAIVLGLVLGLLLALARLSpNPVLRWLATAYVEFFRGTP--LLVQLFFIYFG------ 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549800060 128 lfLVALGVFFPIYINTLL----------------GIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAI 181
Cdd:COG0765   78 --LPLLGIDLSPFVAAVIaltlnsaaylaeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRII 145
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 140-184 4.56e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 37.40  E-value: 4.56e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 549800060 140 YINTLLGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTG 184
Cdd:COG1177  147 VLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
modB PRK09421
molybdate ABC transporter permease subunit;
145-184 4.80e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.21  E-value: 4.80e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 549800060 145 LGIQGVDPQLVEMGRTYGMSPFTLFRRVILPGALPAIFTG 184
Cdd:PRK09421 113 LSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAG 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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