|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
1.54e-176 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 491.39 E-value: 1.54e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 1 MIKRNLPLMITLGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 81 GFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 161 RLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 550713967 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-309 |
6.88e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 253.88 E-value: 6.88e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 2 IKRNLPLMITLGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 82 FWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSSLAWkipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 161 RLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550713967 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
1.58e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 214.97 E-value: 1.58e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 42 NAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 122 AGMFFLRGVSYLVSEESIPINHPiydTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 202 MGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 550713967 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
4.76e-40 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 144.52 E-value: 4.76e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 35 ICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 115 PAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSS------------------------------------------ 151
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 152 ----------------------LAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailfFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550713967 210 TIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
9.63e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.01 E-value: 9.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 37 NILTDNAFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 116 AFIITLAGMFFLRGVSYLVSEE------SIPINHPIYDTLSSLAWKIPGGGRLsamglLMLGVVVIGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 190 YAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 550713967 269 LFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
1.54e-176 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 491.39 E-value: 1.54e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 1 MIKRNLPLMITLGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 81 GFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 161 RLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 550713967 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-309 |
6.88e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 253.88 E-value: 6.88e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 2 IKRNLPLMITLGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 82 FWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSSLAWkipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 161 RLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550713967 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
1.58e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 214.97 E-value: 1.58e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 42 NAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 122 AGMFFLRGVSYLVSEESIPINHPiydTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 202 MGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 550713967 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
4-279 |
3.07e-53 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 179.54 E-value: 3.07e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 4 RNLPLMITLGVFVLGYlYCLTQfPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFW 83
Cdd:COG4214 23 RSLGMIIALVVIWIVF-QILTG-GTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 84 GISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSSlaWKIPGGGRL 162
Cdd:COG4214 101 GLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGgGTIAPFDPTFQAIGN--GFLPDILGT 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 163 SAMGL-------------------------------------------------------------LMLGVVVIGIFLAH 181
Cdd:COG4214 179 LSWVLgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrgipivvlILLVLVVVYTFVLT 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 182 RTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGG 261
Cdd:COG4214 259 RTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGG 338
|
330
....*....|....*...
gi 550713967 262 VGTVLGTLFGVAIQGLIQ 279
Cdd:COG4214 339 VGTVYGAVIGALVMGSLN 356
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-305 |
1.83e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 165.28 E-value: 1.83e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFwGISPLLAFPLVLVMGCAFGAFMG 106
Cdd:PRK09512 37 PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGI-EVNALVAVPAALALGAAIGAVTG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 107 LLIDALKIPAFIITLAGMFFLRGVSyLVSEESIPINHPIYDTLSSLAWKipGGGRLSAMGL---LMLGVVVIGIFLAHRT 183
Cdd:PRK09512 116 VIVAKGKVQAFIATLVMMLLLRGVT-MVYTDGSPINTGFTDNADLFGWF--GIGRPLGIPTpvwIMAIVFLAAWYMLHHT 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 184 RFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVG 263
Cdd:PRK09512 193 RLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKG 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 550713967 264 TVLGTLFGVAIQGLIQTYINFDGtLSSWWTKI--AIGILLFIFI 305
Cdd:PRK09512 273 RIVGTLIGALILGFLNNGLNLLG-VSSYYQMIvkAVVILLAVLV 315
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
27-309 |
1.76e-44 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 155.09 E-value: 1.76e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVfLAKAIGFWGISPLLAFPLVLVMGCAFGAFMG 106
Cdd:COG4158 48 PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAV-VAVLVSLLPGLGLLGIPAALLVGLLFGLING 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 107 LLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINhpiydtlSSLAWKIPGGGRLSA---MGLLMLGVVVIGIFLAHRT 183
Cdd:COG4158 127 LLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFN-------PDLPFAWIGNGYLLGipwLVVIALAVVLASWFILRRT 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 184 RFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFS--VYTqAGYALAGVGVELDAIASVVIGGTLLSGG 261
Cdd:COG4158 200 VLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAarLYA-ANGLQLGQGYELDAIAAVILGGTSFVGG 278
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 550713967 262 VGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG4158 279 IGSIWGTLIGALIIAVLNNGLILLG-VSDFWQFIIKGLVIIIAVALDR 325
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
4.76e-40 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 144.52 E-value: 4.76e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 35 ICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 115 PAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSS------------------------------------------ 151
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 152 ----------------------LAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailfFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550713967 210 TIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
12-283 |
2.77e-33 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 125.56 E-value: 2.77e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 12 LGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGiSPLLAF 91
Cdd:PRK11285 33 LVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATE-SLWLGV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 92 PLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPINHPIYDTLSSLAW-KIPGGGRLSAMGLLM 169
Cdd:PRK11285 112 AAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgKAVGISDERFFALGYANFfGVPAPIWLTVACFVV 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 170 LGvvvigiFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIA 249
Cdd:PRK11285 192 FG------FLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVIS 265
|
250 260 270
....*....|....*....|....*....|....
gi 550713967 250 SVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYIN 283
Cdd:PRK11285 266 ACVLGGVSLKGGIAKISGVVAGVLILGTVENAMN 299
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
29-309 |
1.16e-30 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 117.95 E-value: 1.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 29 FASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIgFWGISPLLAFPL-VLVMGCAFGAFMGL 107
Cdd:PRK09699 33 FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLM-LAGVDPFLAALIgGVLVGGALGAINGC 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 108 LIDALKIPAFIITLAGMFFLRGVSYLVSEESiPINHPIYDTLSSLAWKIPGggrLSAMGLLMLGVVVIGIFLAHRTRFGN 187
Cdd:PRK09699 112 LVNWTGLHPFIITLGTNAIFRGITLVISDAN-SVYGFSFDFVNFFAASVIG---IPVPVIFSLIVALILWFLTTRMRLGR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 188 QVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLG 267
Cdd:PRK09699 188 NIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFS 267
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 550713967 268 TLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:PRK09699 268 VVIGGLIIGTINNGLNILQ-VQTYYQLVVMGGLIIAAVALDR 308
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-319 |
8.66e-25 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 102.50 E-value: 8.66e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFwGISPLLAFPLVLVMGCAFGAFMG 106
Cdd:PRK15432 29 RQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA-GYSLPVACLATLLLGLLAGFFNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 107 LLIDALKIPAFIITLAGMFFLRGVSYLVSE----ESIPinhpiyDTLSSLAWKIPGGgrLSAMGLLMLGVVVIGIFLAHR 182
Cdd:PRK15432 108 VLVAWLRIPAIVATLGTLGLYRGIMLLWTGgkwiEGLP------AELKQLSAPILLG--ISPIGWLTLILILAMAWLLAK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 183 TRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSvyTQAGYA--LAGVGVELDAIASVVIGGTLLSG 260
Cdd:PRK15432 180 TAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFA--SQIGFIpnQTGTGLEMKAIAACVLGGISLLG 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 550713967 261 GVGTVLGTLFGVAIQGLIQTYINFdGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQ 319
Cdd:PRK15432 258 GSGTIIGAVLGAYFLTQIDSVLVL-LRIPAWWNDFIAGLVLLGVLVFDGRLRCALERNL 315
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
25-307 |
4.83e-24 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 100.53 E-value: 4.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 25 QFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAK-------AIGFWGISPLLAFPLVLVM 97
Cdd:PRK09478 32 QDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATllqsmdnANKVFPELATMPIALVILI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 98 GCAFGAFMGLL----IDALKIPAFIITLAGMFFLRGVS--YLVSEESIPINHpIYDTLSSLA--WKIPGGGRLSAMGLLM 169
Cdd:PRK09478 112 VCAIGAVIGLIngliIAYLNVTPFIATLGTMIIVYGINslYYDFVGASPISG-FDSGFSTFAqgFVALGSFRLSYITFYA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 170 LGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIA 249
Cdd:PRK09478 191 LIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIA 270
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550713967 250 SVVIGGTLLSGGVGTVLGTLFGVaiqgLIQTYINFDGT---LSSWWTKIAIGILLFIFIAL 307
Cdd:PRK09478 271 ACVVGGVSFSGGVGTVIGVVTGV----IIFTVINYGLTyigVNPYWQYIIKGAIIIFAVAL 327
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
9.63e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 90.01 E-value: 9.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 37 NILTDNAFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 116 AFIITLAGMFFLRGVSYLVSEE------SIPINHPIYDTLSSLAWKIPGGGRLsamglLMLGVVVIGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 190 YAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 550713967 269 LFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
45-321 |
6.04e-15 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 74.48 E-value: 6.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 45 LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAkAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGM 124
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALG-VLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 125 FFLRGVSYLVSEESIPINhpiYDTLSSLAWKIPGGGRLSAMGL---LMLGVVVIGIF--LAHRTRFGNQVYAIGGSATSA 199
Cdd:PRK15038 124 YLFGGSALLLSGMAGATG---YEGIGGFPMAFTDFANLDVLGLpvpLIIFLICLLVFwlLMHRTHAGRNVFLIGQSPRVA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 200 NLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQ 279
Cdd:PRK15038 201 LYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQ 280
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 550713967 280 TYINFDGTLSSWWTKIAIGILLFIF----IALQRGLTVLWENRQSS 321
Cdd:PRK15038 281 QGLQMAGVPNQISSALSGALLIVVVvgrsVSLHRHQIKEWLARRRN 326
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
43-307 |
2.60e-14 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 72.02 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 43 AFLGIIAVGMTFV-ILSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLI-----DALKIPA 116
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLVirplrGAPPLAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 117 FIITLAGMFFLRGVSYLV-SEESIPINHPIYDTLSslawkiPGGGRLSAMGLLMLGVVVIGI----FLAHRTRFGNQVYA 191
Cdd:COG0559 96 LLATIGLSLVLQGLVLLIfGADPRSFPALLSGSVE------LGGVSIPAYRLFIIVVALVLLaalwLFLRRTRLGLAMRA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 192 IGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFG 271
Cdd:COG0559 170 VAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTM-GFLLGLKAFAAVVL------GGLGSIPGAVVG 242
|
250 260 270
....*....|....*....|....*....|....*.
gi 550713967 272 VAIQGLIQTYINFdgTLSSWWTKIAIGILLFIFIAL 307
Cdd:COG0559 243 GLLLGLAESLGAA--YLPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
45-278 |
1.57e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 69.61 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 45 LGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFwGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAG 123
Cdd:cd06574 4 YAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAILIVA-GYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 124 MFFLRGVSYLVSEESIpINHPIYDTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLA--HRTRFGNQVYAIGGSATSANL 201
Cdd:cd06574 83 MIGLYSINLRIMGGPN-IPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIwfLRTKLGLAMRATGDNPDMARS 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 550713967 202 MGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALAGVGVELDAIASVVIGGTLLsgGVGTVLGTLFGVAIQGLI 278
Cdd:cd06574 162 LGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIV--GRRTIKASILGVIIGAIL 236
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
43-307 |
8.24e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 67.46 E-value: 8.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 43 AFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLI-----DALKIPA 116
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVlrplrGAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 117 FIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLawkipGGGRLSAMGLLMLGVVVIGIFLAH----RTRFGNQVYAI 192
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVEL-----GGVTIPPYRLFIIAVALVLLAALYlflrRTRLGRAIRAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 193 GGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGV 272
Cdd:cd06582 161 AQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTM-GLLLLLKAFAAVVL------GGLGSIPGAVVGG 233
|
250 260 270
....*....|....*....|....*....|....*
gi 550713967 273 AIQGLIQTYINfdGTLSSWWTKIAIGILLFIFIAL 307
Cdd:cd06582 234 LLLGLAESLAA--AYLSSGYKDAVAFVLLILVLLV 266
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
43-311 |
1.23e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 60.92 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 43 AFLGIIAVGMTFVILSGGIdLSVGSViAFTGV---FLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAF-I 118
Cdd:cd06581 2 LIYAILALGLNLLLGYAGQ-LSLGHA-AFFGIgayTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 119 ITLAGMFFLRGVsyLVSEESI---PINHPIYDTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGS 195
Cdd:cd06581 80 ATLAFAEIVRLL--ALNWSSLtggSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIREN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 196 ATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGTLFGVAI 274
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGfVSPESFGFALSIELLLMVVL------GGLGSLLGPVLGAAL 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 550713967 275 QGLIQTYINFdgtLSSWWTKIAIGILLFIF-IALQRGL 311
Cdd:cd06581 232 LVLLPELLRS---LGPGLRLLVFGLLLILVvLFLPRGL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
37-318 |
1.96e-09 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 57.78 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 37 NILTDNAFLGIIAVGMTFVILSGGIdLSVGSViAFTGV---FLAKAIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALK 113
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLGYTGL-LSLGHA-AFFGIgayAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 114 IPAF-IITLAGMFFLRGVsyLVSEESI---PINHPIYDTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQV 189
Cdd:COG4177 84 GDYLaIATLAFAEIVRLL--ALNLESLtggADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 190 YAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGT 268
Cdd:COG4177 162 RAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGfVSPESFSFLLSIEILLMVVL------GGLGSLLGP 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 550713967 269 LFGVAIQGLIQTYINFdgtLSSWWTKIAIGILLFIFIALQRGLTVLWENR 318
Cdd:COG4177 236 VLGAVLLVLLPELLRS---LPEYRLLIFGLLLILVVLFRPRGLAGLLRRL 282
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
42-274 |
1.45e-08 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 55.12 E-value: 1.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 42 NAFLGIIAVGMTFVILSGGI----------DLSVGSVIAFTGVFLAKAIGFwGISPLLAFPLVLVMGCAFGAFMGLLIDA 111
Cdd:COG4120 4 NLLIGALEQGLIYAIMALGVyitfrildfpDLTVDGSFPLGAAVAAVLIVA-GVNPFLATLAAFLAGALAGLVTGLLHTK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 112 LKIPAFiitLAG---MFFLRGVSYLVSEES-IPINHpiYDTLSSLAWKIPGGGRLSAMGLLMLGVVVIGIFLAH--RTRF 185
Cdd:COG4120 83 LKIPPL---LAGiltMTALYSINLRIMGKPnIPLLG--EDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDWflKTEL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 186 GNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSVYTqaGYALA--GVGVELDAIASVVIGGTLLsgGVG 263
Cdd:COG4120 158 GLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQ--GFADVnmGIGTIVIGLASVIIGEVLF--GSR 233
|
250
....*....|.
gi 550713967 264 TVLGTLFGVAI 274
Cdd:COG4120 234 SILRRLLAVVL 244
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
79-227 |
2.93e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 51.27 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 79 AIGFWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPA------------FIITLAGMFFLRGVsyLVSEESipiNHPIY 146
Cdd:COG4603 104 GLALPGLPGPLHLPLALLAGALAGALWAAIPGLLKARFgvnevittlmlnYIALYLVNYLVRGP--LRDPGS---GFPQT 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 147 DTLSSLAW--KIPGGGRLSAMGLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLA 224
Cdd:COG4603 179 PPIPESARlpRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLA 258
|
...
gi 550713967 225 GIV 227
Cdd:COG4603 259 GAV 261
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
70-255 |
2.91e-04 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 41.66 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 70 AFTGVFLAKAIG-FWGISPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFF-LRGVSYLVseesipinhpiyd 147
Cdd:cd06580 32 AFAAALVALYLGlPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIaLGLTSYLL------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550713967 148 tlsslawkipgggrlsamgLLMLGVVVIGIFLAHRTRFGNQVYAIGGSATSANLMGISTRSTTIRIYMLSTGLATLAGIV 227
Cdd:cd06580 99 -------------------LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAY 159
|
170 180 190
....*....|....*....|....*....|.
gi 550713967 228 FSVYTQAGYAL---AGVGveLDAIASVVIGG 255
Cdd:cd06580 160 LVLGVQGRFTEgmsAGYG--FIAIAVALLGR 188
|
|
| |
