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Conserved domains on  [gi|550746573|ref|WP_022648821|]
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MULTISPECIES: stress response protein ElaB [Enterobacter]

Protein Classification

DUF883 domain-containing protein( domain architecture ID 10013509)

DUF883 domain-containing protein similar to Escherichia coli protein ElaB, a putative membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-84 1.66e-54

stress response protein ElaB;


:

Pssm-ID: 182432  Cd Length: 101  Bit Score: 164.63  E-value: 1.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550746573   1 MSFQSWDTRADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASDNYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                 ....
gi 550746573  81 WQGI 84
Cdd:PRK10404  81 WQGI 84
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-84 1.66e-54

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 164.63  E-value: 1.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550746573   1 MSFQSWDTRADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASDNYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                 ....
gi 550746573  81 WQGI 84
Cdd:PRK10404  81 WQGI 84
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 9-84 1.82e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.84  E-value: 1.82e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 550746573   9 RADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASDNYYYRAKQAVYRADDYVHEKPWQGI 84
Cdd:COG4575   16 DLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPWQSV 91
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 10-59 5.41e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.49  E-value: 5.41e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 550746573   10 ADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASD 59
Cdd:pfam05957   3 LIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQD 52
 
Name Accession Description Interval E-value
PRK10404 PRK10404
stress response protein ElaB;
1-84 1.66e-54

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 164.63  E-value: 1.66e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550746573   1 MSFQSWDTRADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASDNYYYRAKQAVYRADDYVHEKP 80
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80


                 ....
gi 550746573  81 WQGI 84
Cdd:PRK10404  81 WQGI 84
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 9-84 1.82e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.84  E-value: 1.82e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 550746573   9 RADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASDNYYYRAKQAVYRADDYVHEKPWQGI 84
Cdd:COG4575   16 DLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPWQSV 91
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 10-59 5.41e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 37.49  E-value: 5.41e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 550746573   10 ADDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVSNASD 59
Cdd:pfam05957   3 LIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQD 52
PRK10132 PRK10132
hypothetical protein; Provisional
 12-81 1.73e-04

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 37.53  E-value: 1.73e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550746573  12 DDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKNRVsNASDNYYYRAKQAVYRADDYVHEKPW 81
Cdd:PRK10132  19 NDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARM-HGRTRVQQAARDAVGCADTFVRERPW 87
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 72-84 3.87e-03

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 32.13  E-value: 3.87e-03
                          10
                  ....*....|...
gi 550746573   72 ADDYVHEKPWQGI 84
Cdd:pfam19029   1 TDDYVHENPWQTI 13
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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