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Conserved domains on  [gi|550754524|ref|WP_022648971|]
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MULTISPECIES: outer membrane protein assembly factor BamC [Enterobacter]

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10013864)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


:

Pssm-ID: 236955  Cd Length: 346  Bit Score: 633.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   1 MAYSVQKSRLAKVAGVSLVMLLAACSSDSRYKRQVSGDESYLDAPPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  81 DIRPPAQPLALVSGARTQFTGDTASLLVE-SARGTTLWPQVVSVIQSKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 160 RYQVSVKPQGYQQAVTVKLLNLEQAGKPVADPSAMQRYSTEMLNVIAAGLDKNAADAANAAQNRNGSTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSESAWQELGASDPQLPSGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 550754524 320 DPKGHTLTQAQNDALVAAFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 633.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   1 MAYSVQKSRLAKVAGVSLVMLLAACSSDSRYKRQVSGDESYLDAPPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  81 DIRPPAQPLALVSGARTQFTGDTASLLVE-SARGTTLWPQVVSVIQSKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 160 RYQVSVKPQGYQQAVTVKLLNLEQAGKPVADPSAMQRYSTEMLNVIAAGLDKNAADAANAAQNRNGSTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSESAWQELGASDPQLPSGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 550754524 320 DPKGHTLTQAQNDALVAAFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 5.30e-129

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 370.87  E-value: 5.30e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   47 LAELHAPAGMILPIQNGDYNIPVTNGSGLVGKALDIRPPAQPLALVSGARTQFTGDTASLLVESARGTtLWPQVVSVIQS 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSKDE-LWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  127 KNYTIDKRDDASQTLTTDWIE-----WNRLDEDQQYRGRYQ--VSVKPQGYQQAVTVKLLNLEQAG--KPVADPSAMQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  198 STEMLNVIAAGLDKNAADAANAAQNRNGSTFDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSIT 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 550754524  278 ATYKPLSESAWQELGASDPQLPSGDYKIQVGDLDNRSSLQFIDPKGHTLTQAQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 2.69e-114

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 335.40  E-value: 2.69e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   7 KSRLAKVAGVSLVMLLAACSSDSRYKRqvSGDESYLDAPPLAELHAPAGMILPIQNGDYNIPvtNGSGLVGKALDIRPPA 86
Cdd:COG3317    1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  87 QPLALVSGARTQFTGDTASLLVESARGTtLWPQVVSVIQSKNYTIDKRDDASQTLTTDWIEWNRLDED------------ 154
Cdd:COG3317   77 QVLPLVDGVRIERSGDQRWLVVDASPEQ-LWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 155 QQYRGRYQVSVKPQ-GYQQAVTVKLLNLEQAG------KPVADPSAmQRYSTEMLNVIAAGLDKNAADAANAAQNRNGST 227
Cdd:COG3317  156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 228 FDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSESA----WQELGASDPQLPSGDY 303
Cdd:COG3317  235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 550754524 304 KIQVGDLDNRSSLQFIDPKGHTLTQAQNDALVAAFQAAFS 343
Cdd:COG3317  315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Name Accession Description Interval E-value
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
1-344 0e+00

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 633.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   1 MAYSVQKSRLAKVAGVSLVMLLAACSSDSRYKRQVSGDESYLDAPPLAELHAPAGMILPIQNGDYNIPVTNGSGLVGKAL 80
Cdd:PRK11679   1 MAYSVQKSRVAKVAGVSLVMLLAACSSDQRYKRQVSGDESYLEAPPLKELHAPAGMILPLQNGDYDIPVTNGSGAVGKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  81 DIRPPAQPLALVSGARTQFTGDTASLLVE-SARGTTLWPQVVSVIQSKNYTIDKRDDASQTLTTDWIEWNRLDEDQQYRG 159
Cdd:PRK11679  81 DIRPPAQPLALLSGARTQFSGDTATLLLEnSPENSKLWPQVVSVLQAKNYPIAKRDDASQTLTTDWVTWNRADEDVQYRG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 160 RYQVSVKPQGYQQAVTVKLLNLEQAGKPVADPSAMQRYSTEMLNVIAAGLDKNAADAANAAQNRNGSTFDVQSGADDTGL 239
Cdd:PRK11679 161 RYQISVKPQGYQQALTVKLLDLEQGGKPVTDPANIQRYNTEMLNLISAGLDKQATDEANAAANRLVGQIDVQSGADDTGL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 240 PMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSESAWQELGASDPQLPSGDYKIQVGDLDNRSSLQFI 319
Cdd:PRK11679 241 PVLIVRAPYNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPPSDSFWQELGAKDPELASGDYKLQVGDLDNRSSLQFI 320

                        330       340
                 ....*....|....*....|....*
gi 550754524 320 DPKGHTLTQAQNDALVAAFQAAFSK 344
Cdd:PRK11679 321 DPKGHPLTQSQNDALVAVFQAAFSK 345
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 47-335 5.30e-129

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 370.87  E-value: 5.30e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   47 LAELHAPAGMILPIQNGDYNIPVTNGSGLVGKALDIRPPAQPLALVSGARTQFTGDTASLLVESARGTtLWPQVVSVIQS 126
Cdd:pfam06804   1 LAPLKVPAGLILPEQNGEYDIPAVANQGAVGKQLDIRPPLQVLPLIEGSRVEESGDSATLLFENSKDE-LWQQVNDFLAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  127 KNYTIDKRDDASQTLTTDWIE-----WNRLDEDQQYRGRYQ--VSVKPQGYQQAVTVKLLNLEQAG--KPVADPSAMQRY 197
Cdd:pfam06804  80 NNIPIAKRDDASGTLETDWITnqeslWNRSDEDVQLRQRYRftISVKPHGRQAALSVSLLDLEEGDdvKEVTSPADKQRY 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  198 STEMLNVIAAGLDKNAADAANAAQNRNGSTFDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSIT 277
Cdd:pfam06804 160 EADMLNNVIAYLDQERRQAEAALANRQSGGIDVQLGADDNGLPVLIVRAPYNVVWDRLPLVLPKLGFTVEDRDRSQGTYF 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 550754524  278 ATYKPLSESAWQELGASDPQLPSGDYKIQVGDLDNRSSLQFIDPKGHTLTQAQNDALV 335
Cdd:pfam06804 240 VKYKAPSSGFWSSLGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQNDALV 297
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 7-343 2.69e-114

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 335.40  E-value: 2.69e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524   7 KSRLAKVAGVSLVMLLAACSSDSRYKRqvSGDESYLDAPPLAELHAPAGMILPIQNGDYNIPvtNGSGLVGKALDIRPPA 86
Cdd:COG3317    1 KLSVRLVLLLLLVLLLAGCSSLQRYFR--SGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIP--AGGAATGSEYDIRPPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524  87 QPLALVSGARTQFTGDTASLLVESARGTtLWPQVVSVIQSKNYTIDKRDDASQTLTTDWIEWNRLDED------------ 154
Cdd:COG3317   77 QVLPLVDGVRIERSGDQRWLVVDASPEQ-LWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIPDfirrtlldglys 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 155 QQYRGRYQVSVKPQ-GYQQAVTVKLLNLEQAG------KPVADPSAmQRYSTEMLNVIAAGLDKNAADAANAAQNRNGST 227
Cdd:COG3317  156 TGERDRFRTRVERGvGGTTEIYVSHRGMEEVGdqkdstVWQPRPAD-PRLEAEMLNRLMVYLGADEEQAAAALAAAQVGG 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550754524 228 FDVQSGADDTGLPMLVVRAPFNQTWQRLPATLEKVGMKVTDSTRSTGSITATYKPLSESA----WQELGASDPQLPSGDY 303
Cdd:COG3317  235 IRVQLGKDADGLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDPDDGEkpgfWSRLFGSDPELKAGDY 314

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 550754524 304 KIQVGDLDNRSSLQFIDPKGHTLTQAQNDALVAAFQAAFS 343
Cdd:COG3317  315 RVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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