|
Name |
Accession |
Description |
Interval |
E-value |
| PatZN |
COG1042 |
Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; |
1-702 |
0e+00 |
|
Acyl-CoA synthetase (NDP forming) [Energy production and conversion];
Pssm-ID: 440664 [Multi-domain] Cd Length: 708 Bit Score: 883.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 1 MSQRGLEALLRPKSIAVIGASMKPDRAGYLMMRNLLSGGFNGPVMPVTPAYKAVQGVLAWPDVQSLPFVPDLAVLCTHAK 80
Cdd:COG1042 1 MSTRSLDALFRPRSVAVIGASDRPGKVGGRVLRNLLEGGFKGKIYPVNPKYDEVLGLPCYPSVADLPEPPDLAVIAVPAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 81 RNLELLESLGQKGCKTCIILSSP--------PEQQPELLACASRYQMRILGPNSLGLLAPWQGLNASFSPVPIRKGKLAF 152
Cdd:COG1042 81 TVPDVVEECGEKGVKAAVVISAGfaetgeegAALEQELLEIARRYGMRLLGPNCLGLINPATGLNATFAPVPPLPGNIAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 153 ISQSAAVSNTILDWAQQREMGFSYFIALGDSLDIDVDELLDFLARDSKTSAILLYLEHLSDARRFVSASRSASRNKPILV 232
Cdd:COG1042 161 VSQSGALGTAILDWAAARGIGFSHFVSLGNEADVDFADLLDYLADDPDTRVILLYLEGIRDGRRFLSAARAAARGKPVVV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 233 IKSGRSPAAQRLLQSHSGM----DPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGEKLMIVSNGAAPAALALDEL 308
Cdd:COG1042 241 LKSGRSEAGARAAASHTGAlagsDAVYDAAFRRAGVIRVDDLEELFDAAEALARQPPPRGRRLAIVTNSGGPGVLAADAL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 309 WLRNGKLATLGEETLQRLRDALPGSVVPDNPLDLRDDASSDRYIKAITILLDSQDFDALMIIHSPSAVAPGSESARTLIE 388
Cdd:COG1042 321 EDLGLELAELSEETQAALRAVLPPFASVGNPVDITGDADPERYAAALEALLADPNVDAVLVILTPTAMTDPEEVAEALIE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 389 AVRNHPRgkyvTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPAlPGNLTANSVDVHS 468
Cdd:COG1042 401 AAKGSGK----PVLASWMGGDSVAEARRLLREAGIPTFRTPERAVRALAALVRYRRNQERLMETPA-SEDFDPDRERARA 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 469 LLQQAIEEGATSLDTHEVQPILGSYGMQTLPTWIAGDSAEAVHIAEQIGYPVALKLRSPDIPHKSDVQGVMLYLRTATEV 548
Cdd:COG1042 476 IIEAALAEGRGVLTEAEAKALLAAYGIPVVPTRLARSAEEAVAAAEEIGYPVVLKIVSPDILHKSDVGGVRLNLRDAEAV 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 549 QQAADAIIDRVKMTWPQARIHGLLVQSMANraGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAAVALPPLNMNLARY 628
Cdd:COG1042 556 RAAFEEILARVRAARPDARIDGVLVQPMVP--GGVELIVGVKRDPVFGPVIMFGLGGIFVEVLKDVALRLPPLNEALARE 633
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550756961 629 LVIQAIKSKKIRGRSALRPLDIAGLSQFLVKVSNLIVDCAEIQRLDIHPLLASGNEFTALDVTLEIAPFVGDRE 702
Cdd:COG1042 634 MIRELRAAKLLRGYRGRPPADLDALADVLVRLSQLAADLPEILELDINPLLVVPEGVVAVDARIRLAPPAPPAP 707
|
|
| AcCoA-syn-alpha |
TIGR02717 |
acetyl coenzyme A synthetase (ADP forming), alpha domain; Although technically reversible, it ... |
6-443 |
3.50e-135 |
|
acetyl coenzyme A synthetase (ADP forming), alpha domain; Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Pssm-ID: 131764 [Multi-domain] Cd Length: 447 Bit Score: 410.93 E-value: 3.50e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 6 LEALLRPKSIAVIGASMKPDRAGYLMMRNLLSGGFNGPVMPVTPAYKAVQGVLAWPDVQSLPFVPDLAVLCTHAKRNLEL 85
Cdd:TIGR02717 1 LEHLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 86 LESLGQKGCKTCIILSS--------PPEQQPELLACASRYQMRILGPNSLGLLAPWQGLNASFSPVPIRKGKLAFISQSA 157
Cdd:TIGR02717 81 VEECGEKGVKGAVVITAgfkevgeeGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGIAFISQSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 158 AVSNTILDWAQQREMGFSYFIALGDSLDIDVDELLDFLARDSKTSAILLYLEHLSDARRFVSASRSASRNKPILVIKSGR 237
Cdd:TIGR02717 161 ALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKPIVVLKSGT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 238 SPAAQRLLQSHSGM----DPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGEKLMIVSNGAAPAALALDELWLRNG 313
Cdd:TIGR02717 241 SEAGAKAASSHTGAlagsDEAYDAAFKQAGVIRADSIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 314 KLATLGEETLQRLRDALPGSVVPDNPLDLRDDASSDRYIKAITILLDSQDFDALMIIHSPSAVAPGSESARTLIEAVRNH 393
Cdd:TIGR02717 321 ELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 550756961 394 PRgkyVTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYR 443
Cdd:TIGR02717 401 NE---KPVVAGFMGGKSVDPAKRILEENGIPNYTFPERAVKALSALYRYA 447
|
|
| ATP-grasp_5 |
pfam13549 |
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ... |
472-694 |
2.55e-88 |
|
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Pssm-ID: 463918 [Multi-domain] Cd Length: 221 Bit Score: 279.75 E-value: 2.55e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 472 QAIEEGATSLDTHEVQPILGSYGMQTLPTWIAGDSAEAVHIAEQIGYPVALKLRSPDIPHKSDVQGVMLYLRTATEVQQA 551
Cdd:pfam13549 1 KALAEGRTVLTEPEAKALLAAYGIPVVPTRLARSPEEAVAAAEEIGYPVVLKIVSPDILHKSDVGGVRLNLRSAEAVRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 552 ADAIIDRVKMTWPQARIHGLLVQSMANraGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAAVALPPLNMNLARYLvI 631
Cdd:pfam13549 81 YEEILERVRRYRPDARIEGVLVQPMAP--GGRELIVGVTRDPQFGPVIMFGLGGIAVEVLKDVAFRLPPLNMTLAREM-I 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550756961 632 QAIKSKKI-RGRSALRPLDIAGLSQFLVKVSNLIVDCAEIQRLDIHPLLASGNEFTALDVTLEI 694
Cdd:pfam13549 158 RRTRAYKLlKGYRGEPPADLDALEDVLVRVSQLVIDFPEIRELDINPLLADEDGVVALDARIRL 221
|
|
| RimL |
COG1670 |
Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, ... |
722-863 |
1.11e-15 |
|
Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 441276 [Multi-domain] Cd Length: 173 Bit Score: 75.81 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 722 NGERALFRPILPEDEPLLRAFISQvtKEDLYYRYFSEIN-EFTHDDLANMTQIDYDREMAIVAVRRSAEGEeILGVTRAI 800
Cdd:COG1670 4 ETERLRLRPLRPEDAEALAELLND--PEVARYLPGPPYSlEEARAWLERLLADWADGGALPFAIEDKEDGE-LIGVVGLY 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550756961 801 S-DPDNVDAEFAVLVRSDLKGLGLGRRLLEKLIGYTRDH-GLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:COG1670 81 DiDRANRSAEIGYWLAPAYWGKGYATEALRALLDYAFEElGLHRVEAEVDPDNTASIRVLEKLGF 145
|
|
| CoA_binding |
smart00881 |
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ... |
9-102 |
1.18e-14 |
|
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Pssm-ID: 214881 [Multi-domain] Cd Length: 100 Bit Score: 70.23 E-value: 1.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 9 LLRP-KSIAVIGASMKPDRAGYLMMRNLLSGG--FNGPVMPVtPAYKAVQGVLAWPDVQSLPFV--PDLAVLCTHAKRNL 83
Cdd:smart00881 1 LLNPnTSVAVVGASGNLGSFGLAVMRNLLEYGtkFVGGVYPG-KVGPKVDGVPVYDSVAEAPEEtgVDVAVIFVPAEAAP 79
|
90
....*....|....*....
gi 550756961 84 ELLESLGQKGCKTCIILSS 102
Cdd:smart00881 80 DAIDEAIEAGIKGIVVITE 98
|
|
| Acetyltransf_1 |
pfam00583 |
Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase ... |
750-863 |
5.37e-09 |
|
Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.
Pssm-ID: 395465 [Multi-domain] Cd Length: 116 Bit Score: 54.83 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 750 DLYYRYFSEinEFTHDDLANMTQIDYDREMAIVAVRrsaEGEEILGVTRA--ISDPDNVDAEFAVLVRSDLKGLGLGRRL 827
Cdd:pfam00583 6 ELLSEEFPE--PWPDEPLDLLEDWDEDASEGFFVAE---EDGELVGFASLsiIDDEPPVGEIEGLAVAPEYRGKGIGTAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 550756961 828 LEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:pfam00583 81 LQALLEWARERGCERIFLEVAADNLAAIALYEKLGF 116
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PatZN |
COG1042 |
Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; |
1-702 |
0e+00 |
|
Acyl-CoA synthetase (NDP forming) [Energy production and conversion];
Pssm-ID: 440664 [Multi-domain] Cd Length: 708 Bit Score: 883.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 1 MSQRGLEALLRPKSIAVIGASMKPDRAGYLMMRNLLSGGFNGPVMPVTPAYKAVQGVLAWPDVQSLPFVPDLAVLCTHAK 80
Cdd:COG1042 1 MSTRSLDALFRPRSVAVIGASDRPGKVGGRVLRNLLEGGFKGKIYPVNPKYDEVLGLPCYPSVADLPEPPDLAVIAVPAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 81 RNLELLESLGQKGCKTCIILSSP--------PEQQPELLACASRYQMRILGPNSLGLLAPWQGLNASFSPVPIRKGKLAF 152
Cdd:COG1042 81 TVPDVVEECGEKGVKAAVVISAGfaetgeegAALEQELLEIARRYGMRLLGPNCLGLINPATGLNATFAPVPPLPGNIAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 153 ISQSAAVSNTILDWAQQREMGFSYFIALGDSLDIDVDELLDFLARDSKTSAILLYLEHLSDARRFVSASRSASRNKPILV 232
Cdd:COG1042 161 VSQSGALGTAILDWAAARGIGFSHFVSLGNEADVDFADLLDYLADDPDTRVILLYLEGIRDGRRFLSAARAAARGKPVVV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 233 IKSGRSPAAQRLLQSHSGM----DPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGEKLMIVSNGAAPAALALDEL 308
Cdd:COG1042 241 LKSGRSEAGARAAASHTGAlagsDAVYDAAFRRAGVIRVDDLEELFDAAEALARQPPPRGRRLAIVTNSGGPGVLAADAL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 309 WLRNGKLATLGEETLQRLRDALPGSVVPDNPLDLRDDASSDRYIKAITILLDSQDFDALMIIHSPSAVAPGSESARTLIE 388
Cdd:COG1042 321 EDLGLELAELSEETQAALRAVLPPFASVGNPVDITGDADPERYAAALEALLADPNVDAVLVILTPTAMTDPEEVAEALIE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 389 AVRNHPRgkyvTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPAlPGNLTANSVDVHS 468
Cdd:COG1042 401 AAKGSGK----PVLASWMGGDSVAEARRLLREAGIPTFRTPERAVRALAALVRYRRNQERLMETPA-SEDFDPDRERARA 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 469 LLQQAIEEGATSLDTHEVQPILGSYGMQTLPTWIAGDSAEAVHIAEQIGYPVALKLRSPDIPHKSDVQGVMLYLRTATEV 548
Cdd:COG1042 476 IIEAALAEGRGVLTEAEAKALLAAYGIPVVPTRLARSAEEAVAAAEEIGYPVVLKIVSPDILHKSDVGGVRLNLRDAEAV 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 549 QQAADAIIDRVKMTWPQARIHGLLVQSMANraGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAAVALPPLNMNLARY 628
Cdd:COG1042 556 RAAFEEILARVRAARPDARIDGVLVQPMVP--GGVELIVGVKRDPVFGPVIMFGLGGIFVEVLKDVALRLPPLNEALARE 633
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550756961 629 LVIQAIKSKKIRGRSALRPLDIAGLSQFLVKVSNLIVDCAEIQRLDIHPLLASGNEFTALDVTLEIAPFVGDRE 702
Cdd:COG1042 634 MIRELRAAKLLRGYRGRPPADLDALADVLVRLSQLAADLPEILELDINPLLVVPEGVVAVDARIRLAPPAPPAP 707
|
|
| AcCoA-syn-alpha |
TIGR02717 |
acetyl coenzyme A synthetase (ADP forming), alpha domain; Although technically reversible, it ... |
6-443 |
3.50e-135 |
|
acetyl coenzyme A synthetase (ADP forming), alpha domain; Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Pssm-ID: 131764 [Multi-domain] Cd Length: 447 Bit Score: 410.93 E-value: 3.50e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 6 LEALLRPKSIAVIGASMKPDRAGYLMMRNLLSGGFNGPVMPVTPAYKAVQGVLAWPDVQSLPFVPDLAVLCTHAKRNLEL 85
Cdd:TIGR02717 1 LEHLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAKYVPQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 86 LESLGQKGCKTCIILSS--------PPEQQPELLACASRYQMRILGPNSLGLLAPWQGLNASFSPVPIRKGKLAFISQSA 157
Cdd:TIGR02717 81 VEECGEKGVKGAVVITAgfkevgeeGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGIAFISQSG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 158 AVSNTILDWAQQREMGFSYFIALGDSLDIDVDELLDFLARDSKTSAILLYLEHLSDARRFVSASRSASRNKPILVIKSGR 237
Cdd:TIGR02717 161 ALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKPIVVLKSGT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 238 SPAAQRLLQSHSGM----DPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGEKLMIVSNGAAPAALALDELWLRNG 313
Cdd:TIGR02717 241 SEAGAKAASSHTGAlagsDEAYDAAFKQAGVIRADSIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 314 KLATLGEETLQRLRDALPGSVVPDNPLDLRDDASSDRYIKAITILLDSQDFDALMIIHSPSAVAPGSESARTLIEAVRNH 393
Cdd:TIGR02717 321 ELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 550756961 394 PRgkyVTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYR 443
Cdd:TIGR02717 401 NE---KPVVAGFMGGKSVDPAKRILEENGIPNYTFPERAVKALSALYRYA 447
|
|
| ATP-grasp_5 |
pfam13549 |
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ... |
472-694 |
2.55e-88 |
|
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Pssm-ID: 463918 [Multi-domain] Cd Length: 221 Bit Score: 279.75 E-value: 2.55e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 472 QAIEEGATSLDTHEVQPILGSYGMQTLPTWIAGDSAEAVHIAEQIGYPVALKLRSPDIPHKSDVQGVMLYLRTATEVQQA 551
Cdd:pfam13549 1 KALAEGRTVLTEPEAKALLAAYGIPVVPTRLARSPEEAVAAAEEIGYPVVLKIVSPDILHKSDVGGVRLNLRSAEAVRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 552 ADAIIDRVKMTWPQARIHGLLVQSMANraGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAAVALPPLNMNLARYLvI 631
Cdd:pfam13549 81 YEEILERVRRYRPDARIEGVLVQPMAP--GGRELIVGVTRDPQFGPVIMFGLGGIAVEVLKDVAFRLPPLNMTLAREM-I 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550756961 632 QAIKSKKI-RGRSALRPLDIAGLSQFLVKVSNLIVDCAEIQRLDIHPLLASGNEFTALDVTLEI 694
Cdd:pfam13549 158 RRTRAYKLlKGYRGEPPADLDALEDVLVRVSQLVIDFPEIRELDINPLLADEDGVVALDARIRL 221
|
|
| Succ_CoA_lig |
pfam13607 |
Succinyl-CoA ligase like flavodoxin domain; This domain contains the catalytic domain from ... |
147-280 |
3.11e-54 |
|
Succinyl-CoA ligase like flavodoxin domain; This domain contains the catalytic domain from Succinyl-CoA ligase alpha subunit and other related enzymes. A conserved histidine is involved in phosphoryl transfer.
Pssm-ID: 433345 [Multi-domain] Cd Length: 138 Bit Score: 184.21 E-value: 3.11e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 147 KGKLAFISQSAAVSNTILDWAQQREMGFSYFIALGDSLDIDVDELLDFLARDSKTSAILLYLEHLSDARRFVSASRSASR 226
Cdd:pfam13607 1 PGNIALVSQSGALGAALLDWARSRGIGFSKFVSLGNEADVDFADLLEYLADDPETRVILLYLEGIRDGRRFLRAARRAAR 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 550756961 227 NKPILVIKSGRSPAAQRLLQSH----SGMDPAWDAAIQRAGLLRVQDTHELFSAVETL 280
Cdd:pfam13607 81 RKPVVVLKAGRSEAGARAAASHtgalAGSDAVYDAAFRQAGVIRVDDLEELFDAAEAL 138
|
|
| CoA_binding_2 |
pfam13380 |
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ... |
13-132 |
4.55e-28 |
|
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Pssm-ID: 433162 [Multi-domain] Cd Length: 116 Bit Score: 109.17 E-value: 4.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 13 KSIAVIGASMKPDRAGYLMMRNLLSGGFngPVMPVTPAYKAVQGVLAWPDVQSLPFVPDLAVLCTHAKRNLELLESLGQK 92
Cdd:pfam13380 1 KTIAVVGASPNPGRPGYKVARYLLEHGY--PVIPVNPKAKEILGEPVYPSLADPPEPVDLVDVFRPPEAVPEIVEEALAL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 550756961 93 GCKTCIILSSppEQQPELLACASRYQMRILGPNSLGLLAP 132
Cdd:pfam13380 79 GAKAVWLQPG--IENEEAAAIARAAGIRVVGDRCLGVEHP 116
|
|
| RimL |
COG1670 |
Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, ... |
722-863 |
1.11e-15 |
|
Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 441276 [Multi-domain] Cd Length: 173 Bit Score: 75.81 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 722 NGERALFRPILPEDEPLLRAFISQvtKEDLYYRYFSEIN-EFTHDDLANMTQIDYDREMAIVAVRRSAEGEeILGVTRAI 800
Cdd:COG1670 4 ETERLRLRPLRPEDAEALAELLND--PEVARYLPGPPYSlEEARAWLERLLADWADGGALPFAIEDKEDGE-LIGVVGLY 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550756961 801 S-DPDNVDAEFAVLVRSDLKGLGLGRRLLEKLIGYTRDH-GLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:COG1670 81 DiDRANRSAEIGYWLAPAYWGKGYATEALRALLDYAFEElGLHRVEAEVDPDNTASIRVLEKLGF 145
|
|
| CoA_binding |
smart00881 |
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ... |
9-102 |
1.18e-14 |
|
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Pssm-ID: 214881 [Multi-domain] Cd Length: 100 Bit Score: 70.23 E-value: 1.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 9 LLRP-KSIAVIGASMKPDRAGYLMMRNLLSGG--FNGPVMPVtPAYKAVQGVLAWPDVQSLPFV--PDLAVLCTHAKRNL 83
Cdd:smart00881 1 LLNPnTSVAVVGASGNLGSFGLAVMRNLLEYGtkFVGGVYPG-KVGPKVDGVPVYDSVAEAPEEtgVDVAVIFVPAEAAP 79
|
90
....*....|....*....
gi 550756961 84 ELLESLGQKGCKTCIILSS 102
Cdd:smart00881 80 DAIDEAIEAGIKGIVVITE 98
|
|
| MnaT |
COG1247 |
L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism]; |
728-863 |
3.15e-14 |
|
L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism];
Pssm-ID: 440860 [Multi-domain] Cd Length: 163 Bit Score: 71.18 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 728 FRPILPEDEPLLRAFISQVTKEDLYyRYFSEinEFTHDDLAN-MTQIDYDREMAIVAVrrsaEGEEILGVTRAIS----D 802
Cdd:COG1247 4 IRPATPEDAPAIAAIYNEAIAEGTA-TFETE--PPSEEEREAwFAAILAPGRPVLVAE----EDGEVVGFASLGPfrprP 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550756961 803 PDNVDAEFAVLVRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:COG1247 77 AYRGTAEESIYVDPDARGRGIGRALLEALIERARARGYRRLVAVVLADNEASIALYEKLGF 137
|
|
| YccU |
COG1832 |
Predicted CoA-binding protein [General function prediction only]; |
7-72 |
2.87e-09 |
|
Predicted CoA-binding protein [General function prediction only];
Pssm-ID: 441437 [Multi-domain] Cd Length: 138 Bit Score: 56.29 E-value: 2.87e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 550756961 7 EALLRPKSIAVIGASMKPDRAGYLMMRNLLSGGFNgpVMPVTPAYKAVQGVLAWPDVQSLPFVPDL 72
Cdd:COG1832 11 EILKSAKTIAVVGLSPNPERPSYYVAKYLQRHGYR--VIPVNPGAKEILGEKVYASLADIPEPVDI 74
|
|
| Acetyltransf_1 |
pfam00583 |
Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase ... |
750-863 |
5.37e-09 |
|
Acetyltransferase (GNAT) family; This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.
Pssm-ID: 395465 [Multi-domain] Cd Length: 116 Bit Score: 54.83 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 750 DLYYRYFSEinEFTHDDLANMTQIDYDREMAIVAVRrsaEGEEILGVTRA--ISDPDNVDAEFAVLVRSDLKGLGLGRRL 827
Cdd:pfam00583 6 ELLSEEFPE--PWPDEPLDLLEDWDEDASEGFFVAE---EDGELVGFASLsiIDDEPPVGEIEGLAVAPEYRGKGIGTAL 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 550756961 828 LEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:pfam00583 81 LQALLEWARERGCERIFLEVAADNLAAIALYEKLGF 116
|
|
| Acetyltransf_3 |
pfam13302 |
Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions. |
725-863 |
6.37e-07 |
|
Acetyltransferase (GNAT) domain; This domain catalyzes N-acetyltransferase reactions.
Pssm-ID: 379112 [Multi-domain] Cd Length: 139 Bit Score: 49.65 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 725 RALFRPILPEDEPLLRAFISQvtKEDLYYRYFSEIN-EFTHDDLANMTQIDYDREMAIVAVRRSAEGEeiLGVTRAIS-D 802
Cdd:pfam13302 1 RLLLRPLTEEDAEALFELLSD--PEVMRYGVPWPLTlEEAREWLARIWAADEAERGYGWAIELKDTGF--IGSIGLYDiD 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550756961 803 PDNVDAEFAVLVRSDLKGLGLGRRLLEKLIGYT-RDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:pfam13302 77 GEPERAELGYWLGPDYWGKGYATEAVRALLEYAfEELGLPRLVARIDPENTASRRVLEKLGF 138
|
|
| RimI |
COG0456 |
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal ... |
814-863 |
1.24e-05 |
|
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440224 [Multi-domain] Cd Length: 92 Bit Score: 44.65 E-value: 1.24e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 550756961 814 VRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:COG0456 21 VDPEYRGRGIGRALLEAALERARERGARRLRLEVREDNEAAIALYEKLGF 70
|
|
| yhbS |
COG3153 |
Predicted N-acetyltransferase YhbS [General function prediction only]; |
728-863 |
1.30e-04 |
|
Predicted N-acetyltransferase YhbS [General function prediction only];
Pssm-ID: 442387 [Multi-domain] Cd Length: 142 Bit Score: 42.77 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 728 FRPILPEDEPLLRAfisqvtkedLYYRYFSEINEfthDDLANMTQIDYDREMAIVAVrrsaEGEEILGVTRAISDPDNVD 807
Cdd:COG3153 1 IRPATPEDAEAIAA---------LLRAAFGPGRE---AELVDRLREDPAAGLSLVAE----DDGEIVGHVALSPVDIDGE 64
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 808 AEFAVL----VRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGmvtLARKLGF 863
Cdd:COG3153 65 GPALLLgplaVDPEYRGQGIGRALMRAALEAARERGARAVVLLGDPSLLP---FYERFGF 121
|
|
| PhnO |
COG0454 |
N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) [Transcription, ... |
728-865 |
2.34e-04 |
|
N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) [Transcription, General function prediction only];
Pssm-ID: 440222 [Multi-domain] Cd Length: 136 Bit Score: 41.96 E-value: 2.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 728 FRPILPEDEPLLRAFisqvtkedlyyryfseinEFTHDDLANMTQIDYDREMAIVAVRRSAEGeeiLGVTRAISDPDnvd 807
Cdd:COG0454 3 IRKATPEDINFILLI------------------EALDAELKAMEGSLAGAEFIAVDDKGEPIG---FAGLRRLDDKV--- 58
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 550756961 808 AEFAVL-VRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGFDV 865
Cdd:COG0454 59 LELKRLyVLPEYRGKGIGKALLEALLEWARERGCTALELDTLDGNPAAIRFYERLGFKE 117
|
|
| ArgA |
COG1246 |
N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and ... |
789-863 |
9.20e-04 |
|
N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and metabolism]; N-acetylglutamate synthase or related acetyltransferase, GNAT family is part of the Pathway/BioSystem: Arginine biosynthesis
Pssm-ID: 440859 [Multi-domain] Cd Length: 132 Bit Score: 40.36 E-value: 9.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 550756961 789 EGEEILGVTRAISDPDNVdAEFA-VLVRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGmvtLARKLGF 863
Cdd:COG1246 35 EDGEIVGCAALHPLDEDL-AELRsLAVHPDYRGRGIGRRLLEALLAEARELGLKRLFLLTTSAAIH---FYEKLGF 106
|
|
| SucD |
COG0074 |
Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA ... |
109-207 |
1.14e-03 |
|
Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Succinyl-CoA synthetase, alpha subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 439844 [Multi-domain] Cd Length: 288 Bit Score: 41.97 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 109 ELLACASRYQMRILGPNSLGLLAPWQgLNASFSPVPI-RKGKLAFISQSAAVSNTILDWAQQREMGFSYFIALG-DSL-D 185
Cdd:COG0074 106 RVKRYAKAKGTRLIGPNCPGIITPGE-CKLGIMPGHIfKPGRVGIVSRSGTLTYEAVWQLTQAGLGQSTCVGIGgDPIiG 184
|
90 100
....*....|....*....|..
gi 550756961 186 IDVDELLDFLARDSKTSAILLY 207
Cdd:COG0074 185 TSFIDVLELFEEDPETEAIVMI 206
|
|
| COG3393 |
COG3393 |
Predicted acetyltransferase, GNAT family [General function prediction only]; |
792-863 |
4.23e-03 |
|
Predicted acetyltransferase, GNAT family [General function prediction only];
Pssm-ID: 442620 [Multi-domain] Cd Length: 86 Bit Score: 37.20 E-value: 4.23e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550756961 792 EILGVTRAISDPDNVDAEFAVLVRSDLKGLGLGRRLLEKLIGYTRDHGLSRLNGITMPNNRGMVTLARKLGF 863
Cdd:COG3393 1 ELVAMAGVRAESPGVAEISGVYTHPEYRGRGLASALVAALAREALARGARTPFLYVDADNPAARRLYERLGF 72
|
|
| SucC |
COG0045 |
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA ... |
484-689 |
6.42e-03 |
|
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA synthetase, beta subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 439815 [Multi-domain] Cd Length: 388 Bit Score: 40.03 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 484 HEVQ--PILGSYGMQTLPTWIAGDSAEAVHIAEQIGY-PVALKlrspdiphksdVQ----------GVMLyLRTATEVQQ 550
Cdd:COG0045 4 HEYQakELLAKYGVPVPRGIVATTPEEAVAAAEELGGpPVVVK-----------AQvhaggrgkagGVKL-AKSPEEARE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550756961 551 AADAIIDRV---KMTWPQAR-IHGLLVQSMANraGAQELRVVVEHDPVFG-PLIML-GEGGVEW------RPEEQAAVAL 618
Cdd:COG0045 72 AAEEILGMTlvtHQTGPKGKpVNKVLVEEGVD--IAKELYLSILLDRATRrPVIMAsTEGGMDIeevaeeTPEKIIKVPI 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550756961 619 PPLnMNLARYlviQAiksKKIRGRSALRPLDIAGLSQFLVKVSNLIVDC-AEIqrLDIHPL-LASGNEFTALD 689
Cdd:COG0045 150 DPL-VGLQPY---QA---RELAFALGLPGKQVKQFAKILKKLYRAFVEKdASL--VEINPLvVTKDGRLVALD 213
|
|
|