|
Name |
Accession |
Description |
Interval |
E-value |
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-206 |
8.37e-109 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 310.57 E-value: 8.37e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGELWLNDRRCDMLPVETRGIGI 76
Cdd:COG4136 1 MLSLENLTITlggrPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFSASGEVLLNGRRLTALPAEQRRIGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:COG4136 81 LFQDDLLFPHLSVGENLAFALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEISRWQ 206
Cdd:COG4136 161 FSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDAPAAGRVLDLGNWQ 210
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-193 |
2.16e-43 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 144.90 E-value: 2.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILF 78
Cdd:COG3840 1 MLRLDDLTYRygDFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPD---SGRILWNGQDLTALPPAERPVSMLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 79 QDALLFDAFSVGQNLMLAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:COG3840 78 QENNLFPHLTVAQNIGLGLrPGLKLTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPF 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 158 SRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:COG3840 158 SALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDA 193
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-192 |
9.87e-42 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 139.96 E-value: 9.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGIL 77
Cdd:cd03259 1 LELKGLSKTygsvRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 78 FQDALLFDAFSVGQNLMLALPAHIVGRA-RRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAeIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEE 193
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-192 |
3.81e-38 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 134.46 E-value: 3.81e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGI 76
Cdd:COG3842 5 ALELENVSKRygdvTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPD---SGRILLDGRDVTGLPPEKRNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVS------------LLra 143
Cdd:COG3842 82 VFQDYALFPHLTVAENVAFGLRMRGVPKAEIRArVAELLELVGLEGLADRYPHQLSGGQQQRVAlaralapeprvlLL-- 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 550795390 144 llaqpqalllDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:COG3842 160 ----------DEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEE 198
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
13-189 |
6.46e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 127.97 E-value: 6.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRcdmLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP---VTGPGPDRGYVFQQDALLPWLTVLDN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRARRNA-VEQALETAGL---ANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:cd03293 94 VALGLELQGVPKAEARErAEELLELVGLsgfENAY---PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170
|
170 180
....*....|....*....|.
gi 550795390 169 RAWVFEVTRQRRIPVVLVTHD 189
Cdd:cd03293 171 QEELLDIWRETGKTVLLVTHD 191
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-203 |
1.53e-36 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 126.84 E-value: 1.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNL--------TIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG 73
Cdd:cd03255 1 IELKNLsktyggggEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 ------IGILFQDALLFDAFSVGQNLMLAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLA 146
Cdd:cd03255 78 afrrrhIGFVFQSFNLLPDLTALENVELPLlLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 550795390 147 QPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEIS 203
Cdd:cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELR 214
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-189 |
5.13e-35 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 124.05 E-value: 5.13e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPvetR 72
Cdd:COG1116 7 ALELRGVSKRfptggggvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPT---SGEVLVDGKPVTGPG---P 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GIGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGL---ANHYtsdPATLSGGERARVSLLRALLAQP 148
Cdd:COG1116 81 DRGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRErARELLELVGLagfEDAY---PHQLSGGMRQRVAIARALANDP 157
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 550795390 149 QALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG1116 158 EVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHD 198
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
11-192 |
1.96e-34 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 124.87 E-value: 1.96e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcDM---LPVETRGIGILFQDALLFDAF 87
Cdd:COG1118 16 TLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPD---SGRIVLNGR--DLftnLPPRERRVGFVFQHYALFPHM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPAHIVGRARRNA-VEQALET---AGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKT 163
Cdd:COG1118 91 TVAENIAFGLRVRPPSKAEIRArVEELLELvqlEGLADRY---PSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDAK 167
|
170 180
....*....|....*....|....*....
gi 550795390 164 LRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:COG1118 168 VRKELRRWLRRLHDELGGTTVFVTHDQEE 196
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-193 |
3.02e-34 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 120.69 E-value: 3.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFaWMVGALsaDFKAHGELWLNDRRCDMLPVET--RGIG 75
Cdd:COG4619 1 LELEGLSFRvggkPILSPVSLTLEAGECVAITGPSGSGKSTLL-RALADL--DPPTSGEIYLDGKPLSAMPPPEwrRQVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILFQDALLFDAfSVGQNLmlALPAHIVGRA-RRNAVEQALETAGLANHY-TSDPATLSGGERARVSLLRALLAQPQALLL 153
Cdd:COG4619 78 YVPQEPALWGG-TVRDNL--PFPFQLRERKfDRERALELLERLGLPPDIlDKPVERLSGGERQRLALIRALLLQPDVLLL 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 550795390 154 DEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:COG4619 155 DEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQI 194
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
13-192 |
7.40e-33 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 117.98 E-value: 7.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:TIGR00968 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLAL------PAHIvgRARRNAVEQALETAGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRA 166
Cdd:TIGR00968 93 IAFGLeirkhpKAKI--KARVEELLELVQLEGLGDRY---PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRK 167
|
170 180
....*....|....*....|....*.
gi 550795390 167 SFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQEE 193
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-192 |
7.46e-33 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 117.76 E-value: 7.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIapLLHEV----NFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGI 76
Cdd:PRK10771 1 MLKLTDITW--LYHHLpmrfDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:PRK10771 76 LFQENNLFSHLTVAQNIGLGLnPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
15-193 |
1.43e-32 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 116.63 E-value: 1.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPaGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR-----RCDM-LPVETRGIGILFQDALLFDAFS 88
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTvlfdsRKKInLPPQQRKIGLVFQQYALFPHLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAHiVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:cd03297 92 VRENLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQL 170
|
170 180
....*....|....*....|....*
gi 550795390 169 RAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03297 171 LPELKQIKKNLNIPVIFVTHDLSEA 195
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-193 |
1.70e-32 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 122.32 E-value: 1.70e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGELWLNDRRCDMLPVETRG- 73
Cdd:COG1123 4 LLEVRDLSVRypggdvPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRISGEVLLDGRDLLELSEALRGr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 -IGILFQDALL-FDAFSVGQNLMLALPAHIVGRA-RRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQA 150
Cdd:COG1123 84 rIGMVFQDPMTqLNPVTVGDQIAEALENLGLSRAeARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 151 LLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:COG1123 164 LIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVV 206
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
12-193 |
2.19e-32 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 116.05 E-value: 2.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFR----VPAGEIVTLMGPSGSGKSTLFAWMVGALSADFkahGELWLNDRRCDMLPVETRGIGILFQDALLFDAF 87
Cdd:cd03298 9 SYGEQPMHfdltFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRA 166
Cdd:cd03298 86 TVEQNVGLGLsPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180
....*....|....*....|....*..
gi 550795390 167 SFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDA 192
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
15-192 |
8.37e-32 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 114.57 E-value: 8.37e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALsadFKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQNLM 94
Cdd:TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 95 LAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVF 173
Cdd:TIGR01277 93 LGLhPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172
|
170
....*....|....*....
gi 550795390 174 EVTRQRRIPVVLVTHDEDD 192
Cdd:TIGR01277 173 QLCSERQRTLLMVTHHLSD 191
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-191 |
1.07e-31 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 114.76 E-value: 1.07e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT--------IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGAL-SADfkaHGELWLNDRRCDMLPVET 71
Cdd:COG1136 4 LLELRNLTksygtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLN-ILGGLdRPT---SGEVLIDGQDISSLSERE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RG------IGILFQDALLFDAFSVGQNLMLAL-PAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVS----- 139
Cdd:COG1136 80 LArlrrrhIGFVFQFFNLLPELTALENVALPLlLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAiaral 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 550795390 140 ------LLrallaqpqallLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDED 191
Cdd:COG1136 160 vnrpklIL-----------ADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPE 206
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
10-192 |
4.26e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 113.59 E-value: 4.26e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSV 89
Cdd:cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLAL--------PAHIVGRARRNAVEQALETAGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:cd03296 92 FDNVAFGLrvkprserPPEAEIRAKVHELLKLVQLDWLADRY---PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
170 180 190
....*....|....*....|....*....|.
gi 550795390 162 KTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:cd03296 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-189 |
2.16e-30 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 114.01 E-value: 2.16e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGI 76
Cdd:COG3839 3 SLELENVSKSyggvEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPT---SGEILIGGRDVTDLPPKDRNIAM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVS------------LLra 143
Cdd:COG3839 80 VFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRrVREAAELLGLEDLLDRKPKQLSGGQRQRVAlgralvrepkvfLL-- 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 550795390 144 llaqpqalllDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG3839 158 ----------DEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHD 193
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
15-193 |
2.32e-29 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 111.35 E-value: 2.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD---FKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQ 91
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDsgrIRLGGEVLQDSARGIFLPPHRRRIGYVFQEARLFPHLSVRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NLMLALpAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:COG4148 97 NLLYGR-KRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPY 175
|
170 180
....*....|....*....|..
gi 550795390 172 VFEVTRQRRIPVVLVTHDEDDI 193
Cdd:COG4148 176 LERLRDELDIPILYVSHSLDEV 197
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
13-192 |
3.58e-29 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 107.73 E-value: 3.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:cd03301 93 IAFGLKLRKVPKDEIDErVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE 172
|
170 180
....*....|....*....|.
gi 550795390 172 VFEVTRQRRIPVVLVTHDEDD 192
Cdd:cd03301 173 LKRLQQRLGTTTIYVTHDQVE 193
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-205 |
6.40e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 106.79 E-value: 6.40e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-IG 75
Cdd:COG4133 2 MLEAENLSCRrgerLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPS---AGEVLWNGEPIRDAREDYRRrLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILFQDALLFDAFSVGQNLMLALPAHIVgRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGL-RADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDEDDIpPGGEVIEISRW 205
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGA-VLLTTHQPLEL-AAARVLDLGDF 205
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-193 |
9.82e-29 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 107.20 E-value: 9.82e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD---FKAHGELWLNDRRCDMLPVETRgIGI 76
Cdd:cd03261 3 LRGLTKSfggrTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDsgeVLIDGEDISGLSEAELYRLRRR-MGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLML------ALPAHIVgrarRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQA 150
Cdd:cd03261 82 LFQSGALFDSLTVFENVAFplrehtRLSEEEI----REIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 151 LLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-193 |
5.90e-28 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 105.45 E-value: 5.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET----- 71
Cdd:COG1127 5 MIEVRNLTKSfgdrVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPD---SGEILVDGQDITGLSEKElyelr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RGIGILFQDALLFDAFSVGQNLMLALPAH--IVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRallaqpq 149
Cdd:COG1127 82 RRIGMLFQGGALFDSLTVFENVAFPLREHtdLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARalaldpe 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 550795390 150 alllDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:COG1127 162 illyDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSA 205
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-193 |
6.66e-28 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 103.42 E-value: 6.66e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRR----CDMLPVETRG 73
Cdd:cd03229 1 LELKNVSKrygqKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDltdlEDELPPLRRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNLMLAlpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 550795390 154 DEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
13-193 |
1.55e-27 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 103.95 E-value: 1.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:cd03299 92 IAYGLKKRKVDKKEIERkVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE 171
|
170 180
....*....|....*....|..
gi 550795390 172 VFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03299 172 LKKIRKEFGVTVLHVTHDFEEA 193
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
13-190 |
4.49e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 102.70 E-value: 4.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRA-RRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRaw 171
Cdd:cd03300 93 IAFGLRLKKLPKAeIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ-- 170
|
170 180
....*....|....*....|..
gi 550795390 172 vFEVTR-QRR--IPVVLVTHDE 190
Cdd:cd03300 171 -LELKRlQKElgITFVFVTHDQ 191
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-191 |
4.73e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 102.44 E-value: 4.73e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR-----RCDMLPVE 70
Cdd:COG2884 1 MIRFENVSKRypggrEALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPT---SGQVLVNGQdlsrlKRREIPYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 71 TRGIGILFQDALLFDAFSVGQNLMLALpaHIVGRAR---RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQ 147
Cdd:COG2884 78 RRRIGVVFQDFRLLPDRTVYENVALPL--RVTGKSRkeiRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNR 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 148 PQALLLDEPFSRLDKTLrasfrAW----VFEVTRQRRIPVVLVTHDED 191
Cdd:COG2884 156 PELLLADEPTGNLDPET-----SWeimeLLEEINRRGTTVLIATHDLE 198
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
15-193 |
5.84e-27 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 105.19 E-value: 5.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfKAH----GELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVG 90
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEivlnGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 91 QNLMLALpAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRA 170
Cdd:TIGR02142 94 GNLRYGM-KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
|
170 180
....*....|....*....|...
gi 550795390 171 WVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:TIGR02142 173 YLERLHAEFGIPILYVSHSLQEV 195
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
13-192 |
1.87e-26 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 103.58 E-value: 1.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAlsaDFKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:TIGR03265 97 IAYGLKNRGMGRAEVAErVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176
|
170 180
....*....|....*....|.
gi 550795390 172 VFEVTRQRRIPVVLVTHDEDD 192
Cdd:TIGR03265 177 IRQLQRRLGVTTIMVTHDQEE 197
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-193 |
2.20e-25 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 98.60 E-value: 2.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLT------IAplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-I 74
Cdd:COG1131 1 IEVRGLTkrygdkTA--LDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPT---SGEVRVLGEDVARDPAEVRRrI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLMLALPAH-IVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSL------------L 141
Cdd:COG1131 76 GYVPQEPALYPDLTVRENLRFFARLYgLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLalallhdpelliL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 550795390 142 rallaqpqalllDEPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDEDDI 193
Cdd:COG1131 156 ------------DEPTSGLDPEARRELWELLRELAAEGKT-VLLSTHYLEEA 194
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
11-161 |
4.18e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 97.61 E-value: 4.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR---GIGILFQDALLFDAF 87
Cdd:cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRarlGIGYLPQEASIFRKL 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 88 SVGQNLMLALPAHIVGRA-RRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:cd03218 91 TVEENILAVLEIRGLSKKeREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
11-193 |
5.41e-25 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 96.77 E-value: 5.41e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFkahGELWLNDRRCDMLPVETRG--IGILFQDA---LLFD 85
Cdd:cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRrkVGLVFQNPddqFFGP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 ------AFSVGQnlmLALPAHIVgrarRNAVEQALETAGLANHYTSDPATLSGGERARVS------------LLrallaq 147
Cdd:cd03225 92 tveeevAFGLEN---LGLPEEEI----EERVEEALELVGLEGLRDRSPFTLSGGQKQRVAiagvlamdpdilLL------ 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 550795390 148 pqalllDEPFSRLDKTLRASFRAWVFEVtRQRRIPVVLVTHDEDDI 193
Cdd:cd03225 159 ------DEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLL 197
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-189 |
6.68e-25 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 97.42 E-value: 6.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG--I 74
Cdd:COG1120 1 MLEAENLSVGyggrPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPS---SGEVLLDGRDLASLSRRELArrI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLMLALPAHI-----VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVS---------- 139
Cdd:COG1120 78 AYVPQEPPAPFGLTVRELVALGRYPHLglfgrPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLiaralaqepp 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 550795390 140 --LLrallaqpqalllDEPFSRLDktLRASFR--AWVFEVTRQRRIPVVLVTHD 189
Cdd:COG1120 158 llLL------------DEPTSHLD--LAHQLEvlELLRRLARERGRTVVMVLHD 197
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-202 |
7.04e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 101.00 E-value: 7.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RG 73
Cdd:COG4987 334 LELEDVSFRypgagrPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQ---SGSITLGGVDLRDLDEDDlrRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNLMLALPAhivgrARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLR 142
Cdd:COG4987 411 IAVVPQRPHLFDT-TLRENLRLARPD-----ATDEELWAALERVGLGDWLAALPdgldtwlgeggRRLSGGERRRLALAR 484
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 143 ALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRipVVLVTHDEDDIPPGGEVIEI 202
Cdd:COG4987 485 ALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRT--VLLITHRLAGLERMDRILVL 542
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
13-158 |
7.48e-25 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 94.64 E-value: 7.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR--RCDMLPVETRGIGILFQDALLFDAFSVG 90
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT---EGTILLDGQdlTDDERKSLRKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550795390 91 QNLMLALPAHIVGRARRNA-VEQALETAGL----ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:pfam00005 78 ENLRLGLLLKGLSKREKDArAEEALEKLGLgdlaDRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-189 |
2.56e-24 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 95.33 E-value: 2.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIAP----LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVG--ALSADFKAHGELWLNDRRC---DMLPVETR 72
Cdd:cd03260 1 IELRDLNVYYgdkhALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlnDLIPGAPDEGEVLLDGKDIydlDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 -GIGILFQDALLFDAfSVGQNLMLALPAH-IVGRARRNA-VEQALETAGLAN--HYTSDPATLSGGERARVSLLRALLAQ 147
Cdd:cd03260 81 rRVGMVFQKPNPFPG-SIYDNVAYGLRLHgIKLKEELDErVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 550795390 148 PQALLLDEPFSRLDKTLRASFRAWVFEVtrQRRIPVVLVTHD 189
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAEL--KKEYTIVIVTHN 199
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-189 |
3.28e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 95.64 E-value: 3.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVET- 71
Cdd:COG1124 1 MLEVRNLSVSygqggrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPW---SGEVTFDGR-----PVTRr 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 ------RGIGILFQDALL-FDA-FSVGQnlMLALPAHIVGRARRNA-VEQALETAGLANHY-TSDPATLSGGERARVSLL 141
Cdd:COG1124 73 rrkafrRRVQMVFQDPYAsLHPrHTVDR--ILAEPLRIHGLPDREErIAELLEQVGLPPSFlDRYPHQLSGGQRQRVAIA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 142 RALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG1124 151 RALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHD 198
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-193 |
5.38e-24 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 94.71 E-value: 5.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGI 74
Cdd:COG1122 1 IELENLSFSypggtPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPT---SGEVLVDGKDITKKNLRElrRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQ--DALLFDAfSVGQNLM-----LALPAHIVgRARrnaVEQALETAGLANHYTSDPATLSGGERARVSL------- 140
Cdd:COG1122 78 GLVFQnpDDQLFAP-TVEEDVAfgpenLGLPREEI-RER---VEEALELVGLEHLADRPPHELSGGQKQRVAIagvlame 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 550795390 141 -----LrallaqpqalllDEPFSRLDKTLRASFRAWVFEVtRQRRIPVVLVTHDEDDI 193
Cdd:COG1122 153 pevlvL------------DEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLV 197
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
7-190 |
1.35e-23 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 93.65 E-value: 1.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 7 LTIaplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR------GIGILFQD 80
Cdd:COG4181 25 LTI---LKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPT---SGTVRLAGQDLFALDEDARarlrarHVGFVFQS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 ALLFDAFSVGQNLMLalPAHIVGR--ARRNAvEQALETAGL---ANHYtsdPATLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:COG4181 99 FQLLPTLTALENVML--PLELAGRrdARARA-RALLERVGLghrLDHY---PAQLSGGEQQRVALARAFATEPAILFADE 172
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDE 190
Cdd:COG4181 173 PTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDP 207
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
11-191 |
1.82e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 92.86 E-value: 1.82e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVG---ALSADFKAHGELwLNDRRCDMLPVETRGIGILFQDALLFDAF 87
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKeelPTSGTIRVNGQD-VSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALpaHIVGRARRNA---VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTL 164
Cdd:cd03292 94 NVYENVAFAL--EVTGVPPREIrkrVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
|
170 180
....*....|....*....|....*..
gi 550795390 165 RASFrAWVFEVTRQRRIPVVLVTHDED 191
Cdd:cd03292 172 TWEI-MNLLKKINKAGTTVVVATHAKE 197
|
|
| tungstate_WtpC |
NF040840 |
tungstate ABC transporter ATP-binding protein WtpC; |
13-192 |
2.02e-23 |
|
tungstate ABC transporter ATP-binding protein WtpC;
Pssm-ID: 468779 [Multi-domain] Cd Length: 347 Bit Score: 95.53 E-value: 2.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQN 92
Cdd:NF040840 16 LRDISLEVKEGEYFIILGPSGAGKTVLLELIAGIWPPD---SGKIYLDGKDITNLPPEKRGIAYVYQNYMLFPHKTVFEN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAHIVGRA----RRNAVEQALETAGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:NF040840 93 IAFGLKLRKVPKEeierKVKEIMELLGISHLLHRK---PRTLSGGEQQRVALARALIIEPKLLLLDEPLSALDVQTRDEL 169
|
170 180
....*....|....*....|....
gi 550795390 169 RAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:NF040840 170 IREMKRWHREFGFTAIHVTHNFEE 193
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
28-192 |
2.19e-23 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 94.87 E-value: 2.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 28 LMGPSGSGKSTLFAWMVGALSADFkahGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQNLMLALPAHIVGRARR 107
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 108 NA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLV 186
Cdd:TIGR01187 78 KPrVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157
|
....*.
gi 550795390 187 THDEDD 192
Cdd:TIGR01187 158 THDQEE 163
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
16-190 |
4.63e-23 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 94.71 E-value: 4.63e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSaDFKAhGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQNLML 95
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLR-MIAGLE-DITS-GDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 96 ALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFE 174
Cdd:PRK11000 99 GLKLAGAKKEEINQrVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178
|
170
....*....|....*.
gi 550795390 175 VTRQRRIPVVLVTHDE 190
Cdd:PRK11000 179 LHKRLGRTMIYVTHDQ 194
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-189 |
7.95e-23 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 91.41 E-value: 7.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR-----RCDML 67
Cdd:cd03257 1 LLEVKNLSVSfptgggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKdllklSRRLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 68 PVETRGIGILFQDAL--LFDAFSVGQNLMLALPAHIVGR---ARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLL 141
Cdd:cd03257 78 KIRRKEIQMVFQDPMssLNPRMTIGEQIAEPLRIHGKLSkkeARKEAVLLLLVGVGLpEEVLNRYPHELSGGQRQRVAIA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 142 RALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
13-189 |
2.42e-22 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 89.90 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFkahGELW-----LNDRRCDMLPVETRgIGILFQDALLFDAF 87
Cdd:cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIidglkLTDDKKNINELRQK-VGMVFQQFNLFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTL 164
Cdd:cd03262 92 TVLENITLA-PIKVKGMSKAEAEERAlelLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170
|
170 180
....*....|....*....|....*...
gi 550795390 165 RASfrawVFEVTRQ---RRIPVVLVTHD 189
Cdd:cd03262 171 VGE----VLDVMKDlaeEGMTMVVVTHE 194
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-192 |
3.02e-22 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 92.59 E-value: 3.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAlsaDFKAHGELWLNDRRCDMLPVETRGIGI 76
Cdd:PRK11607 19 LLEIRNLTKSfdgqHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF---EQPTAGQIMLDGVDLSHVPPYQRPINM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASrVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEE 212
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
12-192 |
3.14e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 92.45 E-value: 3.14e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQ 91
Cdd:PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NLMLALPAhIVGRARRNA------VEQALET---AGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK10851 94 NIAFGLTV-LPRRERPNAaaikakVTQLLEMvqlAHLADRY---PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
170 180 190
....*....|....*....|....*....|
gi 550795390 163 TLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK10851 170 QVRKELRRWLRQLHEELKFTSVFVTHDQEE 199
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
6-202 |
5.44e-22 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 90.40 E-value: 5.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 6 NLTIAplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR------RCDMLPVETRGIGILFQ 79
Cdd:cd03294 35 GQTVG--VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQdiaamsRKELRELRRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 80 DALLFDAFSVGQNLMLALPAHIVGRA-RRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:cd03294 110 SFALLPHRTVLENVAFGLEVQGVPRAeREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 159 RLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD---------IPPGGEVIEI 202
Cdd:cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEalrlgdriaIMKDGRLVQV 242
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
13-189 |
5.75e-22 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 89.33 E-value: 5.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFaWMVGALsaDFKAHGELWLNDRRCDMLPVETRG------IGILFQDALLFDA 86
Cdd:TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGL--DNPTSGEVLFNGQSLSKLSSNERAklrnkkLGFIYQFHHLLPD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 FSVGQNLMLalPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKT 163
Cdd:TIGR02211 98 FTALENVAM--PLLIGKKSVKEAKERAyemLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
|
170 180
....*....|....*....|....*.
gi 550795390 164 LRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:TIGR02211 176 NAKIIFDLMLELNRELNTSFLVVTHD 201
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-188 |
9.93e-22 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 88.79 E-value: 9.93e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT--------IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALsaDFKAHGELWLNDRRCDMLP---- 68
Cdd:cd03258 1 MIELKNVSkvfgdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIR-CINGL--ERPTSGSVLVDGTDLTLLSgkel 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 69 -VETRGIGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLA 146
Cdd:cd03258 78 rKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEErVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 550795390 147 QPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTH 188
Cdd:cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-138 |
1.28e-21 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 88.51 E-value: 1.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET----R 72
Cdd:COG1126 1 MIEIENLHKSfgdlEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTITVDGEDLTDSKKDInklrR 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 73 GIGILFQDALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARV 138
Cdd:COG1126 78 KVGMVFQQFNLFPHLTVLENVTLA-PIKVKKMSKAEAEERAmelLERVGLADKADAYPAQLSGGQQQRV 145
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
11-192 |
1.50e-21 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 88.51 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGAL----SADFKAHGElwlNDRRCDmlPVE-TRGIGILFQDALLFD 85
Cdd:cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMK-MINRLieptSGEIFIDGE---DIREQD--PVElRRKIGYVIQQIGLFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLMLALPAHIVGRARRNA-VEQALETAGL-----ANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:cd03295 89 HMTVEENIALVPKLLKWPKEKIRErADELLALVGLdpaefADRY---PHELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 160 LDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:cd03295 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-189 |
1.94e-21 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 88.23 E-value: 1.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT----IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGAL----SADFKAHGeLWLNDRRCDMlpvetR 72
Cdd:PRK09493 1 MIEFKNVSkhfgPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLR-CINKLeeitSGDLIVDG-LKVNDPKVDE-----R 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GI----GILFQDALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQALE---TAGL---ANHYtsdPATLSGGERARVSLLR 142
Cdd:PRK09493 74 LIrqeaGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQAREllaKVGLaerAHHY---PSELSGGQQQRVAIAR 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 550795390 143 ALLAQPQALLLDEPFSRLDKTLRASfrawVFEVTRQ---RRIPVVLVTHD 189
Cdd:PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHE----VLKVMQDlaeEGMTMVIVTHE 195
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-189 |
2.68e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 88.38 E-value: 2.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVETR 72
Cdd:COG4525 3 MLTVRHVSVRypgggqpqPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPS---SGEITLDGV-----PVTGP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GI--GILFQDALLFDAFSVGQNLMLALPAHIVGRARRNAV-EQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQ 149
Cdd:COG4525 75 GAdrGVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARaEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 550795390 150 ALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG4525 155 FLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-189 |
2.74e-21 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 90.73 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA---------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET 71
Cdd:COG1123 260 LLEVRNLSKRypvrgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPT---SGSILFDGKDLTKLSRRS 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 -----RGIGILFQD--ALLFDAFSVGQNLMLALPAH--IVGRARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLL 141
Cdd:COG1123 337 lrelrRRVQMVFQDpySSLNPRMTVGDIIAEPLRLHglLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIA 416
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 142 RALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHD 464
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
13-189 |
3.12e-21 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 88.20 E-value: 3.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELW-----LNDRRCDmlpveTRgigILFQDALLFDAF 87
Cdd:PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLagtapLAEARED-----TR---LMFQDARLLPWK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPAHIvgrarRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRAS 167
Cdd:PRK11247 97 KVIDNVGLGLKGQW-----RDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171
|
170 180
....*....|....*....|..
gi 550795390 168 FRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11247 172 MQDLIESLWQQHGFTVLLVTHD 193
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-161 |
3.14e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 87.39 E-value: 3.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR---G 73
Cdd:COG1137 3 TLEAENLVKSygkrTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGRIFLDGEDITHLPMHKRarlG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALL 152
Cdd:COG1137 80 IGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREErLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
....*....
gi 550795390 153 LDEPFSRLD 161
Cdd:COG1137 160 LDEPFAGVD 168
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-189 |
4.02e-21 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 86.82 E-value: 4.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCDMLPvetRGIGILFQ 79
Cdd:cd03235 2 VEDLTVSygghPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKER---KRIGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 80 DALLFDAF--SVGQNLMLALPAHI-----VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALL 152
Cdd:cd03235 76 RRSIDRDFpiSVRDVVLMGLYGHKglfrrLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 153 LDEPFSRLDKTLRASFRAWVFEVtRQRRIPVVLVTHD 189
Cdd:cd03235 156 LDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHD 191
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-189 |
5.44e-21 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 87.07 E-value: 5.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRcdmLPVETRGIGI 76
Cdd:COG1121 6 AIELENLTVSyggrPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPT---SGTVRLFGKP---PRRARRRIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAF--SVGQNLMLALPAHI-----VGRARRNAVEQALETAGLAnHYTSDP-ATLSGGERARVS--------- 139
Cdd:COG1121 80 VPQRAEVDWDFpiTVRDVVLMGRYGRRglfrrPSRADREAVDEALERVGLE-DLADRPiGELSGGQQQRVLlaralaqdp 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 550795390 140 ---LLrallaqpqalllDEPFSRLDKTLRASF----RAWvfevtRQRRIPVVLVTHD 189
Cdd:COG1121 159 dllLL------------DEPFAGVDAATEEALyellREL-----RREGKTILVVTHD 198
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-193 |
8.91e-21 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 86.45 E-value: 8.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-IG 75
Cdd:COG4555 1 MIEVENLSKKygkvPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPD---SGSILIDGEDVRKEPREARRqIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILFQDALLFDAFSVGQNLMLALPAH-IVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLD 154
Cdd:COG4555 78 VLPDERGLYDRLTVRENIRYFAELYgLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 155 EPFSRLD----KTLRASFRAWvfevtRQRRIPVVLVTHDEDDI 193
Cdd:COG4555 158 EPTNGLDvmarRLLREILRAL-----KKEGKTVLFSSHIMQEV 195
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-191 |
1.60e-20 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 85.70 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDrrCDMLPVETRG--- 73
Cdd:cd03256 1 IEVENLSKTypngkKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDG--TDINKLKGKAlrq 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 ----IGILFQDALLFDAFSVGQN-LMLALPAHIVGRA---------RRNAVEqALETAGLANHYTSDPATLSGGERARVS 139
Cdd:cd03256 76 lrrqIGMIFQQFNLIERLSVLENvLSGRLGRRSTWRSlfglfpkeeKQRALA-ALERVGLLDKAYQRADQLSGGQQQRVA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 550795390 140 LLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDED 191
Cdd:cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
16-189 |
2.38e-20 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 85.18 E-value: 2.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRR-CDMLPVET--RGIGILFQDALLFDAFSVGQN 92
Cdd:cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDiTGLPPHEIarLGIGRTFQIPRLFPELTVLEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPAH-----IVGRAR------RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:cd03219 96 VMVAAQARtgsglLLARARreereaRERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
|
170 180
....*....|....*....|....*...
gi 550795390 162 KTLRASFRAWVFEVtRQRRIPVVLVTHD 189
Cdd:cd03219 176 PEETEELAELIREL-RERGITVLLVEHD 202
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-189 |
2.44e-20 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 85.48 E-value: 2.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI------AplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR-- 72
Cdd:COG0411 4 LLEVRGLTKrfgglvA--VDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPT---SGRILFDGRDITGLPPHRIar 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 -GIGILFQDALLFDAFSVGQNLMLALPAHI-------------VGRARRNAVEQA---LETAGLANHYTSDPATLSGGER 135
Cdd:COG0411 79 lGIARTFQNPRLFPELTVLENVLVAAHARLgrgllaallrlprARREEREARERAeelLERVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550795390 136 ARV----------SLLrallaqpqalLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG0411 159 RRLeiaralatepKLL----------LLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHD 212
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-189 |
2.88e-20 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 83.64 E-value: 2.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 3 TVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNdrrcdmlpvetrgigilf 78
Cdd:cd03214 1 EVENLSVGyggrTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLD------------------ 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 79 qdallfdafsvGQNLmLALPAHIvgRARRNA-VEQALETAGLAN----HYTsdpaTLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03214 60 -----------GKDL-ASLSPKE--LARKIAyVPQALELLGLAHladrPFN----ELSGGERQRVLLARALAQEPPILLL 121
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 154 DEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
10-190 |
3.99e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.42 E-value: 3.99e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVE--TRGIGILFQDALLFDAf 87
Cdd:TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDevRRRVSVCAQDAHLFDT- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:TIGR02868 424 TVRENLRLARP-----DATDEELWAALERVGLADWLRALPdgldtvlgeggARLSGGERQRLALARALLADAPILLLDEP 498
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRipVVLVTHDE 190
Cdd:TIGR02868 499 TEHLDAETADELLEDLLAALSGRT--VVLITHHL 530
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
16-190 |
5.51e-20 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 85.93 E-value: 5.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSAdfKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQNLML 95
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLR-LVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 96 ALPAHIVGRA-RRNAVEQALET---AGLANHYTSDpatLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:PRK11432 102 GLKMLGVPKEeRKQRVKEALELvdlAGFEDRYVDQ---ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178
|
170
....*....|....*....
gi 550795390 172 VFEVTRQRRIPVVLVTHDE 190
Cdd:PRK11432 179 IRELQQQFNITSLYVTHDQ 197
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
16-161 |
1.02e-19 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 83.48 E-value: 1.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR---GIGILFQDALLFDAFSVGQN 92
Cdd:TIGR04406 20 VSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPD---AGKILIDGQDITHLPMHERarlGIGYLPQEASIFRKLTVEEN 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550795390 93 LMLALpaHIVGRARRNAVEQALETA----GLAnHYTSDPA-TLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:TIGR04406 97 IMAVL--EIRKDLDRAEREERLEALleefQIS-HLRDNKAmSLSGGERRRVEIARALATNPKFILLDEPFAGVD 167
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-189 |
1.43e-19 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 83.67 E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmVGALSADFKA-HGELWLNDR-RCDMLPVE-TRG 73
Cdd:PRK13548 2 MLEARNLSVrlggRTLLDDVSLTLRPGEVVAILGPNGAGKSTL----LRALSGELSPdSGEVRLNGRpLADWSPAElARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNL-MLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLR------ALLA 146
Cdd:PRK13548 78 RAVLPQHSSLSFPFTVEEVVaMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARvlaqlwEPDG 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 147 QPQALLLDEPFSRLD-----KTLRAsfrawVFEVTRQRRIPVVLVTHD 189
Cdd:PRK13548 158 PPRWLLLDEPTSALDlahqhHVLRL-----ARQLAHERGLAVIVVLHD 200
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-193 |
1.43e-19 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 85.97 E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGI 74
Cdd:COG4988 337 IELEDVSFSypggrPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPY---SGSILINGVDLSDLDPASwrRQI 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAfSVGQNLMLALPAhivgrARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLRA 143
Cdd:COG4988 414 AWVPQNPYLFAG-TIRENLRLGRPD-----ASDEELEAALEAAGLDEFVAALPdgldtplgeggRGLSGGQAQRLALARA 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 550795390 144 LLAQPQALLLDEPFSRLD----KTLRASFRAWvfevtRQRRIpVVLVTHDEDDI 193
Cdd:COG4988 488 LLRDAPLLLLDEPTAHLDaeteAEILQALRRL-----AKGRT-VILITHRLALL 535
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-193 |
1.57e-19 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 81.68 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLT------IAplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-I 74
Cdd:cd03230 1 IEVRNLSkrygkkTA--LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRrI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLMlalpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLLD 154
Cdd:cd03230 76 GYLPEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILD 120
|
170 180 190
....*....|....*....|....*....|....*....
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDEDDI 193
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELKKEGKT-ILLSSHILEEA 158
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-161 |
3.27e-19 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 82.25 E-value: 3.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR---GI 74
Cdd:PRK10895 4 LTAKNLAKAykgrRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARarrGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLM--LALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALL 152
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDNLMavLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
....*....
gi 550795390 153 LDEPFSRLD 161
Cdd:PRK10895 161 LDEPFAGVD 169
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-189 |
1.49e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 80.90 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLndrrcDMLPVETRGI-- 74
Cdd:PRK11248 1 MLQISHLYAdyggKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITL-----DGKPVEGPGAer 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLMLALPAHIVGRARRNAV-EQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLL 153
Cdd:PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIaHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 154 DEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
13-192 |
2.79e-18 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 79.43 E-value: 2.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSAdfKAHGELWLNDRRCDMlPVETRGIgiLFQDALLFDAFSVGQN 92
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-LISGLAQ--PTSGGVILEGKQITE-PGPDRMV--VFQNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LMLALPA---HIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFR 169
Cdd:TIGR01184 75 IALAVDRvlpDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
|
170 180
....*....|....*....|...
gi 550795390 170 AWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDE 177
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
10-203 |
3.64e-18 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 79.37 E-value: 3.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFDAf 87
Cdd:PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIyrQQVSYCAQTPTLFGD- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLmlALPAHIVGRA-RRNAVEQALETAGLANHYTSDPAT-LSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLR 165
Cdd:PRK10247 96 TVYDNL--IFPWQIRNQQpDPAIFLDDLERFALPDTILTKNIAeLSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNK 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 550795390 166 ASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEIS 203
Cdd:PRK10247 174 HNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
13-189 |
3.85e-18 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 79.29 E-value: 3.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSA-----DFKAHgelwLNDRRCDMLpveTRGIGILFQD 80
Cdd:COG4161 18 LFDINLECPSGETLVLLGPSGAGKSSLLRVLnlletpdSGQLNIaghqfDFSQK----PSEKAIRLL---RQKVGMVFQQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 ALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:COG4161 91 YNLWPHLTVMENLIEA-PCKVLGLSKEQAREKAmklLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 158 SRLDKTLRASfrawVFEVTR---QRRIPVVLVTHD 189
Cdd:COG4161 170 AALDPEITAQ----VVEIIRelsQTGITQVIVTHE 200
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
11-189 |
4.23e-18 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 81.04 E-value: 4.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSAdfKAHGELWLNDRRC-DMLPVEtRGIGILFQDALLFDAFSV 89
Cdd:PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLER--ITSGEIWIGGRVVnELEPAD-RDIAMVFQNYALYPHMSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:PRK11650 94 RENMAYGLKIRGMPKAEIEErVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173
|
170 180
....*....|....*....|....
gi 550795390 169 RAwvfEVTR-QRRIPV--VLVTHD 189
Cdd:PRK11650 174 RL---EIQRlHRRLKTtsLYVTHD 194
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-194 |
5.22e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 81.18 E-value: 5.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGI 74
Cdd:TIGR02857 322 LEFSGVSVAypgrrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSwrDQI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAfSVGQNLMLALPAhivgrARRNAVEQALETAGL--------ANHYT---SDPATLSGGERARVSLLRA 143
Cdd:TIGR02857 399 AWVPQHPFLFAG-TIAENIRLARPD-----ASDAEIREALERAGLdefvaalpQGLDTpigEGGAGLSGGQAQRLALARA 472
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 550795390 144 LLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRriPVVLVTHDEDDIP 194
Cdd:TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAA 521
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-193 |
6.22e-18 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 76.90 E-value: 6.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 3 TVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALsadFKAHGELWLNDRRCDMLPVET--RGIGI 76
Cdd:cd00267 1 EIENLSFRyggrTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEElrRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQdallfdafsvgqnlmlalpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:cd00267 78 VPQ--------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 157 FSRLDKTLRASFRAWVFEVtRQRRIPVVLVTHDEDDI 193
Cdd:cd00267 108 TSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELA 143
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
11-190 |
6.66e-18 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 80.38 E-value: 6.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVG 90
Cdd:PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 91 QNLMLALPAHIVGRAR-RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFR 169
Cdd:PRK09452 105 ENVAFGLRMQKTPAAEiTPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184
|
170 180
....*....|....*....|.
gi 550795390 170 AWVFEVTRQRRIPVVLVTHDE 190
Cdd:PRK09452 185 NELKALQRKLGITFVFVTHDQ 205
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-188 |
7.53e-18 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 77.04 E-value: 7.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLT------IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RG 73
Cdd:cd03228 1 IEFKNVSfsypgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESlrKN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNLmlalpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03228 78 IAYVPQDPFLFSG-TIRENI------------------------------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190
....*....|....*....|....*....|....*....
gi 550795390 154 DEPFSRLD----KTLRASFRAWVFEVTrqrripVVLVTH 188
Cdd:cd03228 121 DEATSALDpeteALILEALRALAKGKT------VIVIAH 153
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
16-193 |
1.48e-17 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 77.55 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR-GIGILFQDALLFDAFSVGQNLM 94
Cdd:cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARqSLGYCPQFDALFDELTVREHLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 95 L-ALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVF 173
Cdd:cd03263 98 FyARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177
|
170 180
....*....|....*....|
gi 550795390 174 EVTRQRriPVVLVTHDEDDI 193
Cdd:cd03263 178 EVRKGR--SIILTTHSMDEA 195
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
12-191 |
2.73e-17 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 76.53 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCDmLPVETRGIGILFQDA---LLFDafS 88
Cdd:cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIK-AKERRKSIGYVMQDVdyqLFTD--S 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAhivGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:cd03226 89 VREELLLGLKE---LDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
|
170 180
....*....|....*....|...
gi 550795390 169 RAWVFEVTRQRRIpVVLVTHDED 191
Cdd:cd03226 166 GELIRELAAQGKA-VIVITHDYE 187
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
12-189 |
4.93e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 76.39 E-value: 4.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALsaDFKAHGELWLNDRRCDMLP------VETRGIGILFQDALLFD 85
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL--DTPTSGDVIFNGQPMSKLSsaakaeLRNQKLGFIYQFHHLLP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLmlALPAHIVGRARRNAVEQALE---TAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK11629 101 DFTALENV--AMPLLIGKKKPAEINSRALEmlaAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
|
170 180
....*....|....*....|....*..
gi 550795390 163 TLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11629 179 RNADSIFQLLGELNRLQGTAFLVVTHD 205
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
12-190 |
9.69e-17 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.59 E-value: 9.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAlsaDFKAHGELWLNDRRCDMLPVETRG------IGILFQDALLFD 85
Cdd:PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL---DDGSSGEVSLVGQPLHQMDEEARAklrakhVGFVFQSFMLIP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLMLalPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK10584 102 TLNALENVEL--PALLRGESSRQSRNGAkalLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR 179
|
170 180
....*....|....*....|....*...
gi 550795390 163 TLRASFRAWVFEVTRQRRIPVVLVTHDE 190
Cdd:PRK10584 180 QTGDKIADLLFSLNREHGTTLILVTHDL 207
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
13-189 |
1.63e-16 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 75.05 E-value: 1.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSA-----DFKAHgelwLNDRRCDMLpveTRGIGILFQD 80
Cdd:PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLnllemprSGTLNIagnhfDFSKT----PSDKAIREL---RRNVGMVFQQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 ALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:PRK11124 91 YNLWPHLTVQQNLIEA-PCRVLGLSKDQALARAeklLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
170 180 190
....*....|....*....|....*....|..
gi 550795390 158 SRLDKTLRASFRAWVFEVtRQRRIPVVLVTHD 189
Cdd:PRK11124 170 AALDPEITAQIVSIIREL-AETGITQVIVTHE 200
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
15-192 |
3.24e-16 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 73.94 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLN--DRRCDMLPVEtRGIGILFQDALLFDAFSVGQN 92
Cdd:cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAghDVVREPREVR-RRIGIVFQDLSVDDELTGWEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 L-MLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:cd03265 94 LyIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY 173
|
170 180
....*....|....*....|.
gi 550795390 172 VFEVTRQRRIPVVLVTHDEDD 192
Cdd:cd03265 174 IEKLKEEFGMTILLTTHYMEE 194
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-189 |
6.27e-16 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 75.26 E-value: 6.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTI------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RG 73
Cdd:COG2274 474 IELENVSFrypgdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPT---SGRILIDGIDLRQIDPASlrRQ 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLR 142
Cdd:COG2274 551 IGVVLQDVFLFSG-TIRENITLGDP-----DATDEEIIEAARLAGLHDFIEALPmgydtvvgeggSNLSGGQRQRLAIAR 624
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 550795390 143 ALLAQPQALLLDEPFSRLD----KTLRASFRAWVFEVTrqrripVVLVTHD 189
Cdd:COG2274 625 ALLRNPRILILDEATSALDaeteAIILENLRRLLKGRT------VIIIAHR 669
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-189 |
8.96e-16 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 74.78 E-value: 8.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETRG-- 73
Cdd:COG4618 331 LSVENLTVVppgskrPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPP---TAGSVRLDGADLSQWDREELGrh 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNlmlalpahIV--GRARRNAVEQALETAG-------LANHY----TSDPATLSGGERARVSL 140
Cdd:COG4618 408 IGYLPQDVELFDG-TIAEN--------IArfGDADPEKVVAAAKLAGvhemilrLPDGYdtriGEGGARLSGGQRQRIGL 478
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 141 LRALLAQPQALLLDEPFSRLD----KTLRASFRAWvfevtRQRRIPVVLVTHD 189
Cdd:COG4618 479 ARALYGDPRLVVLDEPNSNLDdegeAALAAAIRAL-----KARGATVVVITHR 526
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
11-188 |
1.15e-15 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 72.24 E-value: 1.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFDAfS 88
Cdd:cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADlrRNIGYVPQDVTLFYG-T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAhivgrARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:cd03245 94 LRDNITLGAPL-----ADDERILRAAELAGVTDFVNKHPngldlqigergRGLSGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 158 SRLDKTLRASF----RAWVFEVTrqrripVVLVTH 188
Cdd:cd03245 169 SAMDMNSEERLkerlRQLLGDKT------LIIITH 197
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-161 |
2.17e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 73.72 E-value: 2.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGI 74
Cdd:PRK09536 3 MIDVSDLSVEfgdtTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAasRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSVGQNLMLALPAHI-----VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQ 149
Cdd:PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRsrfdtWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159
|
170
....*....|..
gi 550795390 150 ALLLDEPFSRLD 161
Cdd:PRK09536 160 VLLLDEPTASLD 171
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
13-193 |
2.18e-15 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 71.46 E-value: 2.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGeIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-IGILFQDALLFDAFSVGQ 91
Cdd:cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRrIGYLPQEFGVYPNFTVRE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NL-MLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRA 170
Cdd:cd03264 92 FLdYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171
|
170 180
....*....|....*....|...
gi 550795390 171 WVFEVTrQRRIpVVLVTHDEDDI 193
Cdd:cd03264 172 LLSELG-EDRI-VILSTHIVEDV 192
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
13-191 |
2.35e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 72.35 E-value: 2.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD--FKAHGELWLNDRRCD-MLPVETRG----IGILFQDALLFD 85
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDksAGSHIELLGRTVQREgRLARDIRKsranTGYIFQQFNLVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLML-ALPA--------HIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:PRK09984 100 RLSVLENVLIgALGStpfwrtcfSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDED 191
Cdd:PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-135 |
2.55e-15 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 71.31 E-value: 2.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETR---GI 74
Cdd:cd03224 1 LEVENLNAGygksQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHERaraGI 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550795390 75 GILFQDALLFDAFSVGQNLMLAlpAHIVGRARRNA-VEQALET-----------AGlanhytsdpaTLSGGER 135
Cdd:cd03224 78 GYVPEGRRIFPELTVEENLLLG--AYARRRAKRKArLERVYELfprlkerrkqlAG----------TLSGGEQ 138
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-188 |
2.91e-15 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 70.42 E-value: 2.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG-I 74
Cdd:cd03247 1 LSINNVSFSypeqeqQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSlI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAfSVGQNLmlalpahivgrARRnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLLD 154
Cdd:cd03247 78 SVLNQRPYLFDT-TLRNNL-----------GRR----------------------FSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTRQRRIpvVLVTH 188
Cdd:cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTL--IWITH 155
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
15-193 |
2.92e-15 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 72.98 E-value: 2.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRC-DM-----LPVETRGIGILFQDALLFDAFS 88
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLfDAekgicLPPEKRRIGYVFQDARLFPHYK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAhiVGRARRNAVEQALETAGLANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:PRK11144 93 VRGNLRYGMAK--SMVAQFDKIVALLGIEPLLDRY---PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL 167
|
170 180
....*....|....*....|....*
gi 550795390 169 RAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK11144 168 LPYLERLAREINIPILYVSHSLDEI 192
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-189 |
2.93e-15 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 72.39 E-value: 2.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI--------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGELWLNDRRCDMLPVET- 71
Cdd:COG0444 1 LLEVRNLKVyfptrrgvVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGITSGEILFDGEDLLKLSEKEl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 -----RGIGILFQDAllFDA----FSVGQNLMLALPAH--IVGRARRNAVEQALETAGL------ANHYtsdPATLSGGE 134
Cdd:COG0444 81 rkirgREIQMIFQDP--MTSlnpvMTVGDQIAEPLRIHggLSKAEARERAIELLERVGLpdperrLDRY---PHELSGGM 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 135 RARV----------SLLrallaqpqalLLDEPFSRLDKTLRAS----FRawvfEVTRQRRIPVVLVTHD 189
Cdd:COG0444 156 RQRVmiaralalepKLL----------IADEPTTALDVTIQAQilnlLK----DLQRELGLAILFITHD 210
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
13-189 |
3.54e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 71.06 E-value: 3.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAlsaDFKAHGELWLNDRRCDML-----PVETRGIGILFQDALLFDAF 87
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI---ERPSAGKIWFSGHDITRLknrevPFLRRQIGMIFQDHHLLMDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLmlALPAHIVGRAR---RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTL 164
Cdd:PRK10908 95 TVYDNV--AIPLIIAGASGddiRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
|
170 180
....*....|....*....|....*
gi 550795390 165 RASFRAwVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10908 173 SEGILR-LFEEFNRVGVTVLMATHD 196
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-193 |
3.74e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 70.34 E-value: 3.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELwlnDRRCDmlpvetRGIGILFQDALLFDAF-- 87
Cdd:NF040873 5 RPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRP---TSGTV---RRAGG------ARVAYVPQRSEVPDSLpl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPAHI-----VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:NF040873 73 TVRDLVAMGRWARRglwrrLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152
|
170 180 190
....*....|....*....|....*....|.
gi 550795390 163 TLRASFRAWVFEVTRQRRIpVVLVTHDEDDI 193
Cdd:NF040873 153 ESRERIIALLAEEHARGAT-VVVVTHDLELV 182
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-188 |
7.61e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 70.71 E-value: 7.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTL---FAWMVgALSADFKAHGELWLNDRRCDMLPVET--R 72
Cdd:PRK14247 4 IEIRDLKVSfgqvEVLDGVNLEIPDNTITALMGPSGSGKSTLlrvFNRLI-ELYPEARVSGEVYLDGQDIFKMDVIElrR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GIGILFQDALLFDAFSVGQNLMLALPAHIVGRARRN---AVEQALETAGL----ANHYTSDPATLSGGERARVSLLRALL 145
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKElqeRVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCIARALA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 146 AQPQALLLDEPFSRLDKTLRASFRAWVFEVtrQRRIPVVLVTH 188
Cdd:PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVLVTH 203
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
13-142 |
8.94e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 71.98 E-value: 8.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVETR--------GIGILFQDALLF 84
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPD---SGEILIDGK-----PVRIRsprdaialGIGMVHQHFMLV 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550795390 85 DAFSVGQNLMLALPAHIVGRARRNAVEQALETagLANHY--TSDP----ATLSGGERARVSLLR 142
Cdd:COG3845 93 PNLTVAENIVLGLEPTKGGRLDRKAARARIRE--LSERYglDVDPdakvEDLSVGEQQRVEILK 154
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
12-189 |
1.30e-14 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 69.70 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL-SADFKAHGELWLNDRRCDMLPVETRGIGILFQDALlfDAF--- 87
Cdd:TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLpPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPR--TAFnpl 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 -SVGQNLMLALPAH--IVGRARRNAVEqALETAGLANHYT---SDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:TIGR02770 79 fTMGNHAIETLRSLgkLSKQARALILE-ALEAVGLPDPEEvlkKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157
|
170 180
....*....|....*....|....*...
gi 550795390 162 KTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHD 185
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
13-204 |
1.50e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 70.17 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVET--RGIGILFQDAL-LFDAFSV 89
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDDNFEKlrKHIGIVFQNPDnQFVGSIV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLALPAHIVGRAR-RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASF 168
Cdd:PRK13648 102 KYDVAFGLENHAVPYDEmHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 169 RAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEISR 204
Cdd:PRK13648 182 LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNK 217
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
11-203 |
1.80e-14 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 69.79 E-value: 1.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDrrcDMLPVETRG--------IGILFQDAL 82
Cdd:PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDG---ENIPAMSRSrlytvrkrMSMLFQSGA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 LFDAFSVGQNLMLALPAH--IVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK11831 95 LFTDMNVFDNVAYPLREHtqLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 161 DKTLRASFRAWVFEVTRQRRIPVVLVTHdedDIPpggEVIEIS 203
Cdd:PRK11831 175 DPITMGVLVKLISELNSALGVTCVVVSH---DVP---EVLSIA 211
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
13-189 |
1.83e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.89 E-value: 1.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTlfawmVG-ALSADFKAHGELWLNDR------RCDMLPVETRgIGILFQD--ALL 83
Cdd:PRK15134 302 VKNISFTLRPGETLGLVGESGSGKST-----TGlALLRLINSQGEIWFDGQplhnlnRRQLLPVRHR-IQVVFQDpnSSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAFSVGQNLMLALPAH---IVGRARRNAVEQALETAGLanhytsDPAT-------LSGGERARVSLLRALLAQPQALLL 153
Cdd:PRK15134 376 NPRLNVLQIIEEGLRVHqptLSAAQREQQVIAVMEEVGL------DPETrhrypaeFSGGQRQRIAIARALILKPSLIIL 449
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 154 DEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-202 |
2.28e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 68.75 E-value: 2.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETRGIGI 76
Cdd:PRK13539 2 MLEGEDLACVrggrVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAEACHYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLfDAFSVGQNlmLALPAHIVGRARRnAVEQALETAGLAnHYTSDPA-TLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:PRK13539 79 GHRNAMK-PALTVAEN--LEFWAAFLGGEEL-DIAAALEAVGLA-PLAHLPFgYLSAGQKRRVALARLLVSNRPIWILDE 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDEDDIpPGGEVIEI 202
Cdd:PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGI-VIAATHIPLGL-PGARELDL 198
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-189 |
2.41e-14 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 69.39 E-value: 2.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM------------VGALSADfkahGELWLNDRRC 64
Cdd:PRK11264 3 AIEVKNLVKKfhgqTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlleqpeagtirVGDITID----TARSLSQQKG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 65 DMLPVETRgIGILFQDALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLL 141
Cdd:PRK11264 79 LIRQLRQH-VGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARArelLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 142 RALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHD 189
Cdd:PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT-MVIVTHE 203
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
11-142 |
2.70e-14 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 70.58 E-value: 2.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFDAfS 88
Cdd:COG1132 354 PVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPT---SGRILIDGVDIRDLTLESlrRQIGVVPQDTFLFSG-T 429
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 89 VGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLR 142
Cdd:COG1132 430 IRENIRYGRP-----DATDEEVEEAAKAAQAHEFIEALPdgydtvvgergVNLSGGQRQRIAIAR 489
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
12-188 |
7.09e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 69.31 E-value: 7.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGELWLNDRRCDmLPVETRGIGILFQDALLFDAFSVGQ 91
Cdd:TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-AKEMRAISAYVQQDDLFIPTLTVRE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NLM----LALPAHIVGRARRNAVEQALETAGL---ANHYTSDPAT---LSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:TIGR00955 119 HLMfqahLRMPRRVTKKEKRERVDEVLQALGLrkcANTRIGVPGRvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
170 180 190
....*....|....*....|....*....|.
gi 550795390 162 ktlraSFRAW-VFEVTR---QRRIPVVLVTH 188
Cdd:TIGR00955 199 -----SFMAYsVVQVLKglaQKGKTIICTIH 224
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-188 |
8.02e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 67.94 E-value: 8.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTL---FAWMVgALSADFKAHGELWLNDRRC---DMLPVETR-GIGILFQDALLFDAFS 88
Cdd:PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLlrtFNRLL-ELNEEARVEGEVRLFGRNIyspDVDPIEVRrEVGMVFQYPNPFPHLT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAHIVGRARRN---AVEQALETAGL----ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:PRK14267 102 IYDNVAIGVKLNGLVKSKKEldeRVEWALKKAALwdevKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181
|
170 180
....*....|....*....|....*..
gi 550795390 162 KTLRASFRAWVFEVTRQRRIpvVLVTH 188
Cdd:PRK14267 182 PVGTAKIEELLFELKKEYTI--VLVTH 206
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
10-161 |
9.88e-14 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 69.00 E-value: 9.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFDAf 87
Cdd:TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTlrQFINYLPQEPYIFSG- 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLAlpahivgrARRNA----VEQALETA-----------GLANHYTSDPATLSGGERARVSLLRALLAQPQALL 152
Cdd:TIGR01193 563 SILENLLLG--------AKENVsqdeIWAACEIAeikddienmplGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634
|
....*....
gi 550795390 153 LDEPFSRLD 161
Cdd:TIGR01193 635 LDESTSNLD 643
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-156 |
1.51e-13 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 66.93 E-value: 1.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETR---G 73
Cdd:COG0410 3 MLEVENLHAgyggIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPP---RSGSIRFDGEDITGLPPHRIarlG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNAVEQALET-----------AGlanhytsdpaTLSGGER------- 135
Cdd:COG0410 80 IGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRADLERVYELfprlkerrrqrAG----------TLSGGEQqmlaigr 149
|
170 180
....*....|....*....|....
gi 550795390 136 ---ARVSLLrallaqpqalLLDEP 156
Cdd:COG0410 150 almSRPKLL----------LLDEP 163
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
11-171 |
1.53e-13 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 66.47 E-value: 1.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVG 90
Cdd:cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 91 QNLMLALPAHIVgraRRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD----KTLRA 166
Cdd:cd03268 91 ENLRLLARLLGI---RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDpdgiKELRE 167
|
....*
gi 550795390 167 SFRAW 171
Cdd:cd03268 168 LILSL 172
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
11-161 |
2.43e-13 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 66.10 E-value: 2.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSADFKAHGELWLNDRRcdmlpvetRGIGILFQDALL 83
Cdd:cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIprfydvdSGRILIDGHDVRDYTLASLR--------RQIGLVSQDVFL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAfSVGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLRALLAQPQALL 152
Cdd:cd03251 88 FND-TVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPegydtvigergVKLSGGQRQRIAIARALLKDPPILI 161
|
....*....
gi 550795390 153 LDEPFSRLD 161
Cdd:cd03251 162 LDEATSALD 170
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-188 |
2.72e-13 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 65.46 E-value: 2.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVE-TRGIGI 76
Cdd:TIGR01189 1 LAARNLACSrgerMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTPLAEQRDEpHENILY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLAlpAHIVGRARRNaVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:TIGR01189 78 LGHLPGLKPELSALENLHFW--AAIHGGAQRT-IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEP 154
|
170 180 190
....*....|....*....|....*....|..
gi 550795390 157 FSRLDKTLRASFRAwVFEVTRQRRIPVVLVTH 188
Cdd:TIGR01189 155 TTALDKAGVALLAG-LLRAHLARGGIVLLTTH 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-188 |
2.76e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.59 E-value: 2.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCD-MLPVETRGIGI 76
Cdd:cd03231 1 LEADELTCErdgrALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDfQRDSIARGLLY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFDAFSVGQNLMLALPAHivgraRRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:cd03231 78 LGHAPGIKTTLSVLENLRFWHADH-----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEP 152
|
170 180 190
....*....|....*....|....*....|..
gi 550795390 157 FSRLDKTLRASFrAWVFEVTRQRRIPVVLVTH 188
Cdd:cd03231 153 TTALDKAGVARF-AEAMAGHCARGGMVVLTTH 183
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-189 |
3.02e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 67.40 E-value: 3.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKStlfawmVGALSA-----DFKAH--GELWLNDRRCD 65
Cdd:COG4172 6 LLSVEDLSVAfgqgggtvEAVKGVSFDIAAGETLALVGESGSGKS------VTALSIlrllpDPAAHpsGSILFDGQDLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 66 MLPVET----RG--IGILFQDAL--LFDAFSVGQNLMLALPAH--IVGRARRNAVEQALETAGL---ANHYTSDPATLSG 132
Cdd:COG4172 80 GLSERElrriRGnrIAMIFQEPMtsLNPLHTIGKQIAEVLRLHrgLSGAAARARALELLERVGIpdpERRLDAYPHQLSG 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 550795390 133 GERARV----------SLLrallaqpqalLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG4172 160 GQRQRVmiamalanepDLL----------IADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHD 216
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-194 |
3.41e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 66.25 E-value: 3.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNL-------TIAplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGELWLNDRRcDMLPVE 70
Cdd:PRK13639 1 ILETRDLkysypdgTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILkptSGEVLIKGEPIKYDKK-SLLEVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 71 TRgIGILFQ--DALLFdAFSVGQN-----LMLALPAHIVgrarRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRA 143
Cdd:PRK13639 78 KT-VGIVFQnpDDQLF-APTVEEDvafgpLNLGLSKEEV----EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 550795390 144 LLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQrRIPVVLVTHDEDDIP 194
Cdd:PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVP 201
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-189 |
3.80e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 66.26 E-value: 3.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA---------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET 71
Cdd:COG1101 1 MLELKNLSKTfnpgtvnekRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPD---SGSILIDGKDVTKLPEYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RG--IGILFQDALLFDAFS--VGQNLMLAL---------PAhiVGRARRNAVEQALETA--GLANHYTSDPATLSGGERA 136
Cdd:COG1101 78 RAkyIGRVFQDPMMGTAPSmtIEENLALAYrrgkrrglrRG--LTKKRRELFRELLATLglGLENRLDTKVGLLSGGQRQ 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 550795390 137 RVSLLRALLAQPQALLLDEPFSRLD-KTlrASFrawVFEVTRQ----RRIPVVLVTHD 189
Cdd:COG1101 156 ALSLLMATLTKPKLLLLDEHTAALDpKT--AAL---VLELTEKiveeNNLTTLMVTHN 208
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
11-200 |
6.28e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 65.59 E-value: 6.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGEL-----WLNDRrcDMLPVETRgIGILFQDA-LLF 84
Cdd:PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKItvdgiTLTAK--TVWDIREK-VGIVFQNPdNQF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAFSVGQNLMLALPAHIVGRAR-RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKT 163
Cdd:PRK13640 98 VGATVGDDVAFGLENRAVPRPEmIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 164 LRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVI 200
Cdd:PRK13640 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVL 214
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
12-189 |
7.34e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 65.45 E-value: 7.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFA---WMVGALSADFKAHGELWLNDR---RCDMLPVEtRGIGILFQDALLFD 85
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKvlnRLIEIYDSKIKVDGKVLYFGKdifQIDAIKLR-KEVGMVFQQPNPFP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLMLALPAHIVGRAR--RNAVEQALETAGL----ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PRK14246 104 HLSIYDNIAYPLKSHGIKEKReiKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
|
170 180 190
....*....|....*....|....*....|
gi 550795390 160 LDKTLRASFRAWVFEVTRQrrIPVVLVTHD 189
Cdd:PRK14246 184 IDIVNSQAIEKLITELKNE--IAIVIVSHN 211
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-162 |
8.18e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 64.44 E-value: 8.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVEtrgigi 76
Cdd:PRK13538 1 MLEARNLACErderILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDE------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 lFQDALLF--------DAFSVGQNLMLALPAHivGRARRNAVEQALETAGLANhYTSDPA-TLSGGERARVSLLRALLAQ 147
Cdd:PRK13538 72 -YHQDLLYlghqpgikTELTALENLRFYQRLH--GPGDDEALWEALAQVGLAG-FEDVPVrQLSAGQQRRVALARLWLTR 147
|
170
....*....|....*
gi 550795390 148 PQALLLDEPFSRLDK 162
Cdd:PRK13538 148 APLWILDEPFTAIDK 162
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-161 |
8.30e-13 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 65.06 E-value: 8.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTL---FAWMVgALSADFKAHGELWLN-----DRRCDmlPV 69
Cdd:COG1117 12 IEVRNLNVYygdkQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNRMN-DLIPGARVEGEILLDgediyDPDVD--VV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 70 E-TRGIGILFQDALLFdAFSVGQNlmLALPAHIVGRARRN----AVEQALETAGLAN------HytsDPAT-LSGGE--R 135
Cdd:COG1117 89 ElRRRVGMVFQKPNPF-PKSIYDN--VAYGLRLHGIKSKSeldeIVEESLRKAALWDevkdrlK---KSALgLSGGQqqR 162
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 136 ---AR-------VSLLrallaqpqalllDEPFSRLD 161
Cdd:COG1117 163 lciARalavepeVLLM------------DEPTSALD 186
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-189 |
8.58e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 65.87 E-value: 8.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT----------IAplLHEVNFRVPAGEIVTLMGPSGSGKSTLfAWMVGAL---SAdfkahGELWLNDRrcDM- 66
Cdd:COG1135 1 MIELENLSktfptkggpvTA--LDDVSLTIEKGEIFGIIGYSGAGKSTL-IRCINLLerpTS-----GSVLVDGV--DLt 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 67 ------LPVETRGIGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGL---ANHYtsdPATLSGGERA 136
Cdd:COG1135 71 alsereLRAARRKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKrVAELLELVGLsdkADAY---PSQLSGGQKQ 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550795390 137 RVS-----------LLrallaqpqallLDEPFSRLD-KT-------LRasfrawvfEVTRQRRIPVVLVTHD 189
Cdd:COG1135 148 RVGiaralannpkvLL-----------CDEATSALDpETtrsildlLK--------DINRELGLTIVLITHE 200
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-195 |
9.52e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 64.09 E-value: 9.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGalSADFKA-HGELWLNDRRCDMLPVETR---G 73
Cdd:cd03217 1 LEIKDLHVSvggkEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVtEGEILFKGEDITDLPPEERarlG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNLmlalpahivgrarRNAVEqaletaglanhytsdpaTLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03217 79 IFLAFQYPPEIPGVKNADFL-------------RYVNE-----------------GFSGGEKKRNEILQLLLLEPDLAIL 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 154 DEPFSRLDKTlraSFRAwVFEVTRQRRIP---VVLVTHDE---DDIPP 195
Cdd:cd03217 129 DEPDSGLDID---ALRL-VAEVINKLREEgksVLIITHYQrllDYIKP 172
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
16-191 |
1.16e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 65.98 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELW--LNDRRCDM--LPVETRG-----IGILFQDALLFDA 86
Cdd:TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNvrVGDEWVDMtkPGPDGRGrakryIGILHQEYDLYPH 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 FSVGQNLM----LALPAHIvgrARRNAVeQALETAGLANHYTSD-----PATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:TIGR03269 380 RTVLDNLTeaigLELPDEL---ARMKAV-ITLKMVGFDEEKAEEildkyPDELSEGERHRVALAQVLIKEPRIVILDEPT 455
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 158 SRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDED 191
Cdd:TIGR03269 456 GTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD 489
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-193 |
1.26e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 64.75 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI-------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDrrcDMLPVET-- 71
Cdd:PRK13650 4 IIEVKNLTFkykedqeKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDG---DLLTEENvw 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 ---RGIGILFQD-------ALLFDAFSVG-QNLMLALpahivgRARRNAVEQALETAGLANHYTSDPATLSGGERARVSL 140
Cdd:PRK13650 78 dirHKIGMVFQNpdnqfvgATVEDDVAFGlENKGIPH------EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 141 LRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV 204
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-135 |
1.38e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 65.42 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDML-PVETR--G 73
Cdd:COG1129 4 LLEMRGISKSfggvKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPD---SGEILLDGEPVRFRsPRDAQaaG 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAFSVGQNLMLALPAHIVGRARRNAV----EQALETAGLANhytsDPAT----LSGGER 135
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLGREPRRGGLIDWRAMrrraRELLARLGLDI----DPDTpvgdLSVAQQ 146
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
15-202 |
1.48e-12 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 65.44 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKST---LFAWMVGALSADFKAHGELWLNDRRCDMLPVETRGIGILFQDALLFDAFSVGQ 91
Cdd:PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTmvrLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NLMLALP-AHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRA 170
Cdd:PRK10070 126 NTAFGMElAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQD 205
|
170 180 190
....*....|....*....|....*....|..
gi 550795390 171 WVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEI 202
Cdd:PRK10070 206 ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
12-161 |
1.59e-12 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 63.83 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGELWLNDRrcdmlPVE----TRGIGILFQDALLFDAF 87
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ-----PRKpdqfQKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNL----MLALPAHIVGRARRNAVEQALETAgLANHYTSDP--ATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:cd03234 97 TVRETLtytaILRLPRKSSDAIRKKRVEDVLLRD-LALTRIGGNlvKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
13-166 |
1.91e-12 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 65.09 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkahGELWLNDRRCD------MLPVEtRGIGILFQDAllFDA 86
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPSE----GEIRFDGQDLDglsrraLRPLR-RRMQVVFQDP--FGS 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 FS----VGQNL---MLALPAHIVGRARRNAVEQALETAGLanhytsDPATL-------SGGERARVSLLRALLAQPQALL 152
Cdd:COG4172 375 LSprmtVGQIIaegLRVHGPGLSAAERRARVAEALEEVGL------DPAARhryphefSGGQRQRIAIARALILEPKLLV 448
|
170
....*....|....
gi 550795390 153 LDEPFSRLDKTLRA 166
Cdd:COG4172 449 LDEPTSALDVSVQA 462
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
13-189 |
2.68e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 63.94 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET-----RGIGILFQDAL-LFDA 86
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQrkafrRDIQMVFQDSIsAVNP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 -FSVGQnlMLALPA-HIVG--RARRNA-VEQALETAGLA-NHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK10419 105 rKTVRE--IIREPLrHLLSldKAERLArASEMLRAVDLDdSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182
|
170 180
....*....|....*....|....*....
gi 550795390 161 DKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10419 183 DLVLQAGVIRLLKKLQQQFGTACLFITHD 211
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-196 |
3.05e-12 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 63.57 E-value: 3.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmVGALSAD-FKAHG-ELWLNDRR---CDMLPVET 71
Cdd:COG1119 3 LLELRNVTVRrggkTILDDISWTVKPGEHWAILGPNGAGKSTL----LSLITGDlPPTYGnDVRLFGERrggEDVWELRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RgIGIlfqdallfdafsVGQNLMLALPAHI-------------VGRAR------RNAVEQALETAGLAnHYTSDP-ATLS 131
Cdd:COG1119 79 R-IGL------------VSPALQLRFPRDEtvldvvlsgffdsIGLYReptdeqRERARELLELLGLA-HLADRPfGTLS 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 132 GGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPG 196
Cdd:COG1119 145 QGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPG 209
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-189 |
7.69e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 62.81 E-value: 7.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 6 NLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM--VGALSADFKAHGELWLNDRRC----DMLPVETRgIG 75
Cdd:PRK14271 26 NLTLGfagkTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLnrMNDKVSGYRYSGDVLLGGRSIfnyrDVLEFRRR-VG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILFQDALLFdAFSVGQNLMLALPAH-IVGRARRNAVEQA-LETAGL----ANHYTSDPATLSGGERARVSLLRALLAQPQ 149
Cdd:PRK14271 105 MLFQRPNPF-PMSIMDNVLAGVRAHkLVPRKEFRGVAQArLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPE 183
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 550795390 150 ALLLDEPFSRLDKTLRASFRAWVFEVTrqRRIPVVLVTHD 189
Cdd:PRK14271 184 VLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHN 221
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-189 |
8.23e-12 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 62.54 E-value: 8.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAH-----GELWLNDRRCDMLPVE- 70
Cdd:PRK13547 1 MLTADHLHVArrhrAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRgarvtGDVTLNGEPLAAIDAPr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 71 -TRGIGILFQDALLFDAFSVGQNLMLALPAHI-----VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRA- 143
Cdd:PRK13547 81 lARLRAVLPQAAQPAFAFSAREIVLLGRYPHArragaLTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVl 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 550795390 144 --------LLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK13547 161 aqlwpphdAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
10-192 |
1.00e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 62.34 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALsadFKAHGELWLNDRrcdMLPVET-----RGIGILFQDA-LL 83
Cdd:PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGM---VLSEETvwdvrRQVGMVFQNPdNQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAFSVGQNLMLALPAHIVGR---ARRnaVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK13635 94 FVGATVQDDVAFGLENIGVPReemVER--VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
|
170 180 190
....*....|....*....|....*....|..
gi 550795390 161 DKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK13635 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDE 203
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
13-202 |
1.01e-11 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 63.20 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGAL----SADFKAHGE--LWLNDrrcDMLPVETRG-IGILFQDALLFD 85
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLdkptSGTYRVAGQdvATLDA---DALAQLRREhFGFIFQRYHLLS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLmlALPAHIVGRARRNAVEQA---LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK10535 100 HLTAAQNV--EVPAVYAGLERKQRLLRAqelLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 550795390 163 TLRASFRAwVFEVTRQRRIPVVLVTHDEDDIPPGGEVIEI 202
Cdd:PRK10535 178 HSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEI 216
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
11-188 |
1.09e-11 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 62.92 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFDAfS 88
Cdd:PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAAlrQAISVVSQRVHLFSA-T 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDPA----------TLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:PRK11160 430 LRDNLLLAAP-----NASDEALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504
|
170 180 190
....*....|....*....|....*....|
gi 550795390 159 RLDKTLRASFRAWVFEVTRQRriPVVLVTH 188
Cdd:PRK11160 505 GLDAETERQILELLAEHAQNK--TVLMITH 532
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
2-140 |
1.35e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 61.49 E-value: 1.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkahGELWLNDRRCDMLPVET--RGIGILFQ 79
Cdd:PRK03695 1 MQLNDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAElaRHRAYLSQ 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550795390 80 DALLFDAFSVGQNLMLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSL 140
Cdd:PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRL 137
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-166 |
1.40e-11 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 60.64 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmVGALSADFKAH---GELWLNDRRCDMLP 68
Cdd:cd03213 4 LSFRNLTVTvksspsksgkQLLKNVSGKAKPGELTAIMGPSGAGKSTL----LNALAGRRTGLgvsGEVLINGRPLDKRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 69 VETRgIGILFQDALLFDAFSVGQNLMLAlpAHIVGrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQP 148
Cdd:cd03213 80 FRKI-IGYVPQDDILHPTLTVRETLMFA--AKLRG--------------------------LSGGERKRVSIALELVSNP 130
|
170 180
....*....|....*....|....*.
gi 550795390 149 QALLLDEPFSRLD--------KTLRA 166
Cdd:cd03213 131 SLLFLDEPTSGLDsssalqvmSLLRR 156
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
11-160 |
1.66e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.38 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDML-PVETRGIGILF--QDALLFDAF 87
Cdd:PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLtPAKAHQLGIYLvpQEPLLFPNL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550795390 88 SVGQNLMLALPAHivgRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK15439 102 SVKENILFGLPKR---QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
4-193 |
1.67e-11 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 61.68 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLT------IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcDMLPVET-----R 72
Cdd:TIGR04520 3 VENVSfsypesEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPT---SGKVTVDGL--DTLDEENlweirK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GIGILFQD-------ALLFD--AFSVgQNLMLAlPAHIVGRarrnaVEQALETAGLANHYTSDPATLSGGERARVSL--- 140
Cdd:TIGR04520 78 KVGMVFQNpdnqfvgATVEDdvAFGL-ENLGVP-REEMRKR-----VDEALKLVGMEDFRDREPHLLSGGQKQRVAIagv 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550795390 141 ---------LrallaqpqalllDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:TIGR04520 151 lamrpdiiiL------------DEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA 200
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
13-192 |
1.69e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 61.65 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLfAWMVGALSADF----KAHGELWLNDRRCDMlpveTRGIGILFQDA-LLFDAF 87
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTT-ARLIDGLFEEFegkvKIDGELLTAENVWNL----RRKIGMVFQNPdNQFVGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPAHIVGRARR-NAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRA 166
Cdd:PRK13642 98 TVEDDVAFGMENQGIPREEMiKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
|
170 180
....*....|....*....|....*.
gi 550795390 167 SFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK13642 178 EIMRVIHEIKEKYQLTVLSITHDLDE 203
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-161 |
1.72e-11 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 60.31 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTI------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELwlndrRCDMLPVETRG-- 73
Cdd:cd03246 1 LEVENVSFrypgaePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP---TSGRV-----RLDGADISQWDpn 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 -----IGILFQDALLFDAfSVGQNLmlalpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQP 148
Cdd:cd03246 73 elgdhVGYLPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNP 115
|
170
....*....|...
gi 550795390 149 QALLLDEPFSRLD 161
Cdd:cd03246 116 RILVLDEPNSHLD 128
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
13-193 |
2.24e-11 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 61.31 E-value: 2.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALsadFKAHGELWLNDRrcdMLPVET--------RGIGILFQ--DAL 82
Cdd:TIGR04521 21 LDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLL---KPTSGTVTIDGR---DITAKKkkklkdlrKKVGLVFQfpEHQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 LFD-------AFsvG-QNLMLAlPAHIVGRARRnaveqALETAGLANHY-TSDPATLSGGERARVSL------------L 141
Cdd:TIGR04521 95 LFEetvykdiAF--GpKNLGLS-EEEAEERVKE-----ALELVGLDEEYlERSPFELSGGQMRRVAIagvlamepevliL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 550795390 142 rallaqpqalllDEPFSRLD----KTLRASFRAWVfevtRQRRIPVVLVTHDEDDI 193
Cdd:TIGR04521 167 ------------DEPTAGLDpkgrKEILDLFKRLH----KEKGLTVILVTHSMEDV 206
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-189 |
3.02e-11 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 61.28 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKS-TLFAWMvGALSADFKAHGELWLNDRRCDMLP--- 68
Cdd:PRK09473 12 LLDVKDLRVTfstpdgdvTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALM-GLLAANGRIGGSATFNGREILNLPeke 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 69 ---VETRGIGILFQDAL--LFDAFSVGQNLMLALPAHiVGRARRNAVEQAL---------ETAGLANHYtsdPATLSGGE 134
Cdd:PRK09473 91 lnkLRAEQISMIFQDPMtsLNPYMRVGEQLMEVLMLH-KGMSKAEAFEESVrmldavkmpEARKRMKMY---PHEFSGGM 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 135 RARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-189 |
3.87e-11 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 60.39 E-value: 3.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI--APLL--HEVNFRVPAGEIVTLMGPSGSGKSTLFawmvGALSADFK-AHGELWLNDRRCDMLP---VETR 72
Cdd:PRK11300 5 LLSVSGLMMrfGGLLavNNVNLEVREQEIVSLIGPNGAGKTTVF----NCLTGFYKpTGGTILLRGQHIEGLPghqIARM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GIGILFQDALLFDAFSVGQNLMLALPAH-----IVG--------RARRNAVEQA---LETAGLANHYTSDPATLSGGERA 136
Cdd:PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQlktglFSGllktpafrRAESEALDRAatwLERVGLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 137 RVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-189 |
3.93e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 61.23 E-value: 3.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlpveTRgIGILFQ 79
Cdd:COG0488 1 LENLSKSfggrPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPD---SGEVSIPKG--------LR-IGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 80 DALLFDAFSVGQNLMLALPAHIVGRARRNAVEQALETAGLANH--------------YTSDP------------------ 127
Cdd:COG0488 69 EPPLDDDLTVLDTVLDGDAELRALEAELEELEAKLAEPDEDLErlaelqeefealggWEAEAraeeilsglgfpeedldr 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 550795390 128 --ATLSGGERARVSL------------LrallaqpqalllDEPFSRLDktLRAsfRAWVFEVTRQRRIPVVLVTHD 189
Cdd:COG0488 149 pvSELSGGWRRRVALarallsepdlllL------------DEPTNHLD--LES--IEWLEEFLKNYPGTVLVVSHD 208
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
13-193 |
4.80e-11 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 59.60 E-value: 4.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETrgIGILFQDALLFDAFSVGQN 92
Cdd:cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNR--IGYLPEERGLYPKMKVIDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 93 LM-LALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAW 171
Cdd:cd03269 91 LVyLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV 170
|
170 180
....*....|....*....|..
gi 550795390 172 VFEVTRQRRiPVVLVTHDEDDI 193
Cdd:cd03269 171 IRELARAGK-TVILSTHQMELV 191
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
16-189 |
5.65e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 61.02 E-value: 5.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET-----RGIGILFQD--ALLFDAFS 88
Cdd:PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKlqalrRDIQFIFQDpyASLDPRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPAH--IVGRARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLR 165
Cdd:PRK10261 420 VGDSIMEPLRVHglLPGKAAAARVAWLLERVGLlPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
|
170 180
....*....|....*....|....
gi 550795390 166 ASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10261 500 GQIINLLLDLQRDFGIAYLFISHD 523
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
13-194 |
5.74e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 60.25 E-value: 5.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDM----LPVETRGIGILFQ--DALLFDA 86
Cdd:PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYsrkgLMKLRESVGMVFQdpDNQLFSA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 fSVGQN-----LMLALPAHIVgrarRNAVEQALETAGLAnHYTSDPA-TLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK13636 99 -SVYQDvsfgaVNLKLPEDEV----RKRVDNALKRTGIE-HLKDKPThCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 161 DKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDIP 194
Cdd:PRK13636 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP 206
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-189 |
5.99e-11 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 60.03 E-value: 5.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCDMLPVE--TRGI 74
Cdd:PRK11231 2 TLRTENLTVGygtkRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRqlARRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAFSV------GQNLMLALPAHIvGRARRNAVEQALE---TAGLANHYTSDpatLSGGERARVSLLRALL 145
Cdd:PRK11231 79 ALLPQHHLTPEGITVrelvayGRSPWLSLWGRL-SAEDNARVNQAMEqtrINHLADRRLTD---LSGGQRQRAFLAMVLA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 550795390 146 AQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHD 189
Cdd:PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT-VVTVLHD 197
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
13-201 |
8.34e-11 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 60.20 E-value: 8.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSAdfKAHGELWLNDRrcDM-------LPVETRGIGILFQDALLFD 85
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIR-CINLLER--PTSGRVLVDGQ--DLtalsekeLRKARRQIGMIFQHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLmlALPAHIVGRAR---RNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK11153 96 SRTVFDNV--ALPLELAGTPKaeiKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 550795390 163 TLRASFRAWVFEVTRQRRIPVVLVTH---------DEDDIPPGGEVIE 201
Cdd:PRK11153 174 ATTRSILELLKDINRELGLTIVLITHemdvvkricDRVAVIDAGRLVE 221
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-189 |
8.47e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 60.14 E-value: 8.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI------APL--LHEVNFRVPAGEIVTLMGPSGSGKS-TLFAWM--------VGALSADFKAHGELWLNDR- 62
Cdd:PRK11022 3 LLNVDKLSVhfgdesAPFraVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMglidypgrVMAEKLEFNGQDLQRISEKe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 63 RCDMLPVEtrgIGILFQDAL--LFDAFSVGQNLMLALPAHIVG--RARRNAVEQALETAGL---ANHYTSDPATLSGGER 135
Cdd:PRK11022 83 RRNLVGAE---VAMIFQDPMtsLNPCYTVGFQIMEAIKVHQGGnkKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGMS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 550795390 136 ARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
2-141 |
1.01e-10 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 58.93 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGalSADFKA-HGELWLNDRRCDMLPVETR---G 73
Cdd:COG0396 1 LEIKNLHVSvegkEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG--HPKYEVtSGSILLDGEDILELSPDERaraG 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550795390 74 IGILFQDALLFDAFSVGQNLMLALPAH----IVGRARRNAVEQALETAGLANHYTSDP--ATLSGGERARVSLL 141
Cdd:COG0396 79 IFLAFQYPVEIPGVSVSNFLRTALNARrgeeLSAREFLKLLKEKMKELGLDEDFLDRYvnEGFSGGEKKRNEIL 152
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
13-203 |
1.47e-10 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 57.44 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDML-PVETR--GIGILFQdallfdafsv 89
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFAsPRDARraGIAMVYQ---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 gqnlmlalpahivgrarrnaveqaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLLDEPFSRLDktlrASFR 169
Cdd:cd03216 83 ----------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALT----PAEV 118
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 170 AWVFEVTRQRR---IPVVLVTHDEDdippggEVIEIS 203
Cdd:cd03216 119 ERLFKVIRRLRaqgVAVIFISHRLD------EVFEIA 149
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
15-189 |
1.68e-10 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 58.69 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPV------ETRGI-----GILFQDAL- 82
Cdd:TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELyqlseaERRRLmrtewGFVHQNPRd 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 -LFDAFSVGQNL---MLALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:TIGR02323 98 gLRMRVSAGANIgerLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177
|
170 180 190
....*....|....*....|....*....|.
gi 550795390 159 RLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:TIGR02323 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
14-189 |
2.86e-10 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 58.07 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 14 HEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVE--TRGIGILFQDALLFDAFSVGQ 91
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKevARRIGLLAQNATTPGDITVQE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 92 NLMLALPAH--IVGRARR---NAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRA 166
Cdd:PRK10253 101 LVARGRYPHqpLFTRWRKedeEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180
|
170 180
....*....|....*....|...
gi 550795390 167 SFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10253 181 DLLELLSELNREKGYTLAAVLHD 203
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
11-162 |
2.88e-10 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 57.62 E-value: 2.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RGIGILFQDALLFdAFS 88
Cdd:cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSlrSMIGVVLQDTFLF-SGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLMLALPahivgRARRNAVEQALETAG-------LANHYTSDP----ATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:cd03254 93 IMENIRLGRP-----NATDEEVIEAAKEAGahdfimkLPNGYDTVLgengGNLSQGERQLLAIARAMLRDPKILILDEAT 167
|
....*
gi 550795390 158 SRLDK 162
Cdd:cd03254 168 SNIDT 172
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
13-193 |
3.00e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 58.21 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLND-------RRCDMLPVETRgIGILFQ--DALL 83
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDivvsstsKQKEIKPVRKK-VGVVFQfpESQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAFSVGQnlmLALPAHIVGRARRNA---VEQALETAGLANHY-TSDPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PRK13643 98 FEETVLKD---VAFGPQNFGIPKEKAekiAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 160 LDKTLRASFRAwVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13643 175 LDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDV 207
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
11-188 |
3.17e-10 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 57.63 E-value: 3.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMV-------GALSADFKAHGELWLNDRRcdmlpvetRGIGILFQDALL 83
Cdd:cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFrfydvssGSILIDGQDIREVTLDSLR--------RAIGVVPQDTVL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAfSVGQNLMLALPAhivgrARRNAVEQALETAGLANHYTSDP---AT--------LSGGERARVSLLRALLAQPQALL 152
Cdd:cd03253 87 FND-TIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPdgyDTivgerglkLSGGEKQRVAIARAILKNPPILL 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 153 LDEPFSRLD-KTLRASFRAwVFEVTRQRriPVVLVTH 188
Cdd:cd03253 161 LDEATSALDtHTEREIQAA-LRDVSKGR--TTIVIAH 194
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
11-191 |
3.61e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 57.28 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALS-ADFKAHGELWLNDrrcdmlpvetrgigiLFQDALLFDAFSV 89
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgTPVAGCVDVPDNQ---------------FGREASLIDAIGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLALpahivgrarrnaveQALETAGLANHYT--SDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTL--R 165
Cdd:COG2401 109 KGDFKDAV--------------ELLNAVGLSDAVLwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTakR 174
|
170 180
....*....|....*....|....*.
gi 550795390 166 ASFRawVFEVTRQRRIPVVLVTHDED 191
Cdd:COG2401 175 VARN--LQKLARRAGITLVVATHHYD 198
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
23-169 |
4.28e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 58.35 E-value: 4.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 23 GEIVTLMGPSGSGKSTLFAWMVGALSADfKAHGELWLNDRRCDMlPVETRgIGILFQDALLFDAFSVGQNL----MLALP 98
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTK-QILKR-TGFVTQDDILYPHLTVRETLvfcsLLRLP 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 99 AHIVGRARRNAVEQALETAGLA--------NHYTSDpatLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTlrASFR 169
Cdd:PLN03211 171 KSLTKQEKILVAESVISELGLTkcentiigNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT--AAYR 244
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
13-189 |
6.53e-10 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 57.10 E-value: 6.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM--VGALSADFKAHGELW-----LNDRRCDmlPVETRG-IGILFQDALLF 84
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrLNDLIPGFRVEGKVTfhgknLYAPDVD--PVEVRRrIGMVFQKPNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 D-------AFSVGQNLMLALPAHIVGRARRNA-----VEQALETAGLAnhytsdpatLSGGERARVSLLRALLAQPQALL 152
Cdd:PRK14243 104 PksiydniAYGARINGYKGDMDELVERSLRQAalwdeVKDKLKQSGLS---------LSGGQQQRLCIARAIAVQPEVIL 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 550795390 153 LDEPFSRLD--KTLRasfrawVFEVTRQ--RRIPVVLVTHD 189
Cdd:PRK14243 175 MDEPCSALDpiSTLR------IEELMHElkEQYTIIIVTHN 209
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-189 |
7.53e-10 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 56.90 E-value: 7.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSADFK-------AHGELWLNDRRcDMLPVETRgIGIL 77
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCInflekpsEGSIVVNGQtinlvrdKDGQLKVADKN-QLRLLRTR-LTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 78 FQDALLFDAFSVGQNLMLAlPAHIVGRARRNAVEQA---LETAGLANHYTSD-PATLSGGERARVSLLRALLAQPQALLL 153
Cdd:PRK10619 98 FQHFNLWSHMTVLENVMEA-PIQVLGLSKQEARERAvkyLAKVGIDERAQGKyPVHLSGGQQQRVSIARALAMEPEVLLF 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 550795390 154 DEPFSRLDKTLrasfrawVFEVTR------QRRIPVVLVTHD 189
Cdd:PRK10619 177 DEPTSALDPEL-------VGEVLRimqqlaEEGKTMVVVTHE 211
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
10-161 |
8.05e-10 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 57.42 E-value: 8.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSADFKAHGELWLNDRRcdmlpvetRGIGILFQDAL 82
Cdd:TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIprfyepdSGQILLDGHDLADYTLASLR--------RQVALVSQDVV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 LFDAfSVGQNLMLALPAHiVGRARrnaVEQALETA-----------GLANHYTSDPATLSGGERARVSLLRALLAQPQAL 151
Cdd:TIGR02203 417 LFND-TIANNIAYGRTEQ-ADRAE---IERALAAAyaqdfvdklplGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491
|
170
....*....|
gi 550795390 152 LLDEPFSRLD 161
Cdd:TIGR02203 492 ILDEATSALD 501
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
16-166 |
8.37e-10 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 57.05 E-value: 8.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLfAWMVGAL---SAdfkahGELWLNDR------RCDMLPVeTRGIGILFQD--ALLF 84
Cdd:COG4608 37 VSFDIRRGETLGLVGESGCGKSTL-GRLLLRLeepTS-----GEILFDGQditglsGRELRPL-RRRMQMVFQDpyASLN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAFSVGQNLMLALPAHIVG--RARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:COG4608 110 PRMTVGDIIAEPLRIHGLAskAERRERVAELLELVGLrPEHADRYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
....*
gi 550795390 162 KTLRA 166
Cdd:COG4608 190 VSIQA 194
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
10-189 |
8.48e-10 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 56.74 E-value: 8.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVET-----RGIGILFQDAllF 84
Cdd:TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQLDRKQrrafrRDVQLVFQDS--P 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAF----SVGQNLMLALpAHI--VGRARRNAVEQA-LETAGL-ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:TIGR02769 99 SAVnprmTVRQIIGEPL-RHLtsLDESEQKARIAElLDMVGLrSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:TIGR02769 178 VSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
10-179 |
1.01e-09 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 57.28 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSADFKAHGELWLNDRRcdmlpvetRGIGILFQDAL 82
Cdd:PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLqrvfdpqSGRILIDGTDIRTVTRASLR--------RNIAVVFQDAG 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 LFDAfSVGQNLML----ALPAHIVGRARRNAVEQALETA--GLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:PRK13657 420 LFNR-SIEDNIRVgrpdATDEEMRAAAERAQAHDFIERKpdGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
|
170 180
....*....|....*....|...
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQR 179
Cdd:PRK13657 499 TSALDVETEAKVKAALDELMKGR 521
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
12-161 |
1.05e-09 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 56.34 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcDMLPVET----RGIGILFQDALLFDAf 87
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGH--DLALADPawlrRQVGVVLQENVLFNR- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLALPAhivgrARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:cd03252 91 SIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPegydtivgeqgAGLSGGQRQRIAIARALIHNPRILIFDEA 165
|
....*
gi 550795390 157 FSRLD 161
Cdd:cd03252 166 TSALD 170
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
11-193 |
1.70e-09 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 55.42 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGEL-WlnDRRCDMLpvetRGIGILF-QDALLFD 85
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLqptSGEVRVAGLVpW--KRRKKFL----RRIGVVFgQKTQLWW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLmlALPAHIVG------RARRNAVEQALETAGLANHytsdPA-TLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:cd03267 109 DLPVIDSF--YLLAAIYDlpparfKKRLDELSELLDLEELLDT----PVrQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 159 RLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI 217
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1-96 |
1.95e-09 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 54.75 E-value: 1.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETR---GIGIL 77
Cdd:cd03215 4 VLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAiraGIAYV 80
|
90 100
....*....|....*....|..
gi 550795390 78 FQD---ALLFDAFSVGQNLMLA 96
Cdd:cd03215 81 PEDrkrEGLVLDLSVAENIALS 102
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-188 |
2.26e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.55 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM--VGALSADFKAHGELWLN-----DRRCDMlpV 69
Cdd:PRK14239 5 ILQVSDLSVyynkKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEVTITGSIVYNghniySPRTDT--V 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 70 ETRG-IGILFQDALLFdAFSVGQNLMLALP-AHIVGRARRN-AVEQALETAGLAN----HYTSDPATLSGGERARVSLLR 142
Cdd:PRK14239 83 DLRKeIGMVFQQPNPF-PMSIYENVVYGLRlKGIKDKQVLDeAVEKSLKGASIWDevkdRLHDSALGLSGGQQQRVCIAR 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 550795390 143 ALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIpvVLVTH 188
Cdd:PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTR 205
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
12-189 |
2.42e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 55.56 E-value: 2.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwMVGALSAdfKAHGELWLNDRrcdmlPVET-------RGIGILFQDALLF 84
Cdd:PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQP--PSEGEILLDAQ-----PLESwsskafaRKVAYLPQQLPAA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAFSVGQNLMLA-LPAH----IVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PRK10575 98 EGMTVRELVAIGrYPWHgalgRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
|
170 180 190
....*....|....*....|....*....|
gi 550795390 160 LDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10575 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
2-189 |
3.24e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 55.09 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA---PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKA-HGELWLNDRRcdMLPVETRGIGIl 77
Cdd:PRK10418 5 IELRNIALQaaqPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQtAGRVLLDGKP--VAPCALRGRKI- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 78 fqdALLFDAFSVGQNLMLALPAH------IVGRARRNAV-EQALETAGLANHYT---SDPATLSGGERARVSLLRALLAQ 147
Cdd:PRK10418 82 ---ATIMQNPRSAFNPLHTMHTHaretclALGKPADDATlTAALEAVGLENAARvlkLYPFEMSGGMLQRMMIALALLCE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 550795390 148 PQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-142 |
3.88e-09 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 55.46 E-value: 3.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlpVEtrgIGI 76
Cdd:COG0488 315 VLELEGLSKSygdkTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPD---SGTVKLGET------VK---IGY 382
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 550795390 77 LFQDallFDAFSVGQNLMLALpAHIVGRARRNAVEQALETAGLANHYTSDP-ATLSGGERARVSLLR 142
Cdd:COG0488 383 FDQH---QEELDPDKTVLDEL-RDGAPGGTEQEVRGYLGRFLFSGDDAFKPvGVLSGGEKARLALAK 445
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
2-188 |
4.42e-09 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 54.57 E-value: 4.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmVGALSADFK---AHGELWLNDRRCDMLPVETR-- 72
Cdd:TIGR01978 1 LKIKDLHVSvedkEILKGVNLTVKKGEIHAIMGPNGSGKSTL----SKTIAGHPSyevTSGTILFKGQDLLELEPDERar 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 -GIGILFQDALLFDAFSVGQNLMLALPAHivgRARRNA-----------VEQALETAG----LANHYTSDpaTLSGGERA 136
Cdd:TIGR01978 77 aGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGEepldlldfeklLKEKLALLDmdeeFLNRSVNE--GFSGGEKK 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 550795390 137 RVSLLRALLAQPQALLLDEPFSRLD-KTLRAsfrawVFEVTRQRRIP---VVLVTH 188
Cdd:TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDiDALKI-----VAEGINRLREPdrsFLIITH 202
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
13-193 |
4.71e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 54.67 E-value: 4.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLN-----DRRCDMLPVETRgIGILFQ--DALLFD 85
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDgvditDKKVKLSDIRKK-VGLVFQypEYQLFE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 -------AFSVgQNLMLAlPAHIVGRARRnaveqALETAGLANHYTSD--PATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:PRK13637 99 etiekdiAFGP-INLGLS-EEEIENRVKR-----AMNIVGLDYEDYKDksPFELSGGQKRRVAIAGVVAMEPKILILDEP 171
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 157 FSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13637 172 TAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV 208
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-189 |
5.16e-09 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 55.10 E-value: 5.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKStlfawmVGALS--------------ADFKAHGELW 58
Cdd:PRK15134 5 LLAIENLSVAfrqqqtvrTVVNDVSLQIEAGETLALVGESGSGKS------VTALSilrllpsppvvypsGDIRFHGESL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 59 LNDRRCDMLPVETRGIGILFQDAL--LFDAFSVGQNLMLALPAH--IVGRARRNAVEQALETAGL---ANHYTSDPATLS 131
Cdd:PRK15134 79 LHASEQTLRGVRGNKIAMIFQEPMvsLNPLHTLEKQLYEVLSLHrgMRREAARGEILNCLDRVGIrqaAKRLTDYPHQLS 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 550795390 132 GGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
11-188 |
5.56e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.87 E-value: 5.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRRCDMLPVE-----TRG-IGILFQDALLF 84
Cdd:cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEatrsrNRYsVAYAAQKPWLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAfSVGQNLMLALPahiVGRARRNAVEQA--------LETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:cd03290 92 NA-TVEENITFGSP---FNKQRYKAVTDAcslqpdidLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 157 FSRLDKTLRASF-RAWVFEVTRQRRIPVVLVTH 188
Cdd:cd03290 168 FSALDIHLSDHLmQEGILKFLQDDKRTLVLVTH 200
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
12-161 |
6.31e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 55.17 E-value: 6.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmVGALSADFK-AHGELWLnDRRCDMLPVET-------RGiGILFQD--- 80
Cdd:PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTL----LQSLLSQFEiSEGRVWA-ERSIAYVPQQAwimnatvRG-NILFFDeed 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 -ALLFDAFSVGQnlmlaLPAHIvgrarrnaveqALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PTZ00243 749 aARLADAVRVSQ-----LEADL-----------AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
..
gi 550795390 160 LD 161
Cdd:PTZ00243 813 LD 814
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
5-188 |
6.61e-09 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 53.63 E-value: 6.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 5 KNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRrcdmlpvetrgIGILFQDALLF 84
Cdd:cd03250 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPGS-----------IAYVSQEPWIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAfSVGQNlmlalpahIVGRARRNA--VEQALETAGLanhyTSD----PA-----------TLSGGERARVSLLRALLAQ 147
Cdd:cd03250 79 NG-TIREN--------ILFGKPFDEerYEKVIKACAL----EPDleilPDgdlteigekgiNLSGGQKQRISLARAVYSD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 550795390 148 PQALLLDEPFSRLDktlrASFRAWVFE-----VTRQRRIpVVLVTH 188
Cdd:cd03250 146 ADIYLLDDPLSAVD----AHVGRHIFEncilgLLLNNKT-RILVTH 186
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-193 |
1.86e-08 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 53.31 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTI-----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALsadfKAHGELWLNDRRCDMLPVET--RGI 74
Cdd:PRK11174 350 IEAEDLEIlspdgKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESwrKHL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAfSVGQNLMLALPAhivgrARRNAVEQALETAGLA----------NHYTSD-PATLSGGERARVSLLRA 143
Cdd:PRK11174 426 SWVGQNPQLPHG-TLRDNVLLGNPD-----ASDEQLQQALENAWVSeflpllpqglDTPIGDqAAGLSVGQAQRLALARA 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 144 LLAQPQALLLDEPFSRLD-----KTLRASFRAWvfevtrqRRIPVVLVTHDEDDI 193
Cdd:PRK11174 500 LLQPCQLLLLDEPTASLDahseqLVMQALNAAS-------RRQTTLMVTHQLEDL 547
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-180 |
2.25e-08 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 52.37 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET- 71
Cdd:cd03266 1 MITADALTKRfrdvkktvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RGIGILFQDALLFDAFSVGQNLMLALPAHIVGR----ARRNAVEQALETAGLANHYTSDpatLSGGERARVSLLRALLAQ 147
Cdd:cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGdeltARLEELADRLGMEELLDRRVGG---FSTGMRQKVAIARALVHD 154
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 148 PQALLLDEPFSRLDKTLRASFRawvfEVTRQRR 180
Cdd:cd03266 155 PPVLLLDEPTTGLDVMATRALR----EFIRQLR 183
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-189 |
2.44e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 52.62 E-value: 2.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT--IAPL--LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVETRG--- 73
Cdd:PRK11701 6 LLSVRGLTklYGPRkgCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSeae 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 --------IGILFQDAL--LFDAFSVGQN----LMlALPAHIVGRARRNAVE--QALETAglANHYTSDPATLSGGERAR 137
Cdd:PRK11701 83 rrrllrteWGFVHQHPRdgLRMQVSAGGNigerLM-AVGARHYGDIRATAGDwlERVEID--AARIDDLPTTFSGGMQQR 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 550795390 138 VSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-200 |
2.47e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 52.69 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWL--NDRRCDMLPVETR 72
Cdd:PRK13632 7 MIKVENVSFSypnsenNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIdgITISKENLKEIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 73 GIGILFQDA-LLFDAFSVGQNLMLALPAHIVGRARRNA-VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQA 150
Cdd:PRK13632 84 KIGIIFQNPdNQFIGATVEDDIAFGLENKKVPPKKMKDiIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 550795390 151 LLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVI 200
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVI 213
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-188 |
2.49e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.39 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmvgalsadFKAHGELWlndrrcdmlPVETRGIGI 76
Cdd:cd03223 1 IELENLSLAtpdgrVLLKDLSFEIKPGDRLLITGPSGTGKSSL-----------FRALAGLW---------PWGSGRIGM 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 LFQDALLFdafsvgqnlmlaLPAH---IVGRARrnavEQALetaglanhYTSDpATLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03223 61 PEGEDLLF------------LPQRpylPLGTLR----EQLI--------YPWD-DVLSGGEQQRLAFARLLLHKPKFVFL 115
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 154 DEPFSRLDKTLRASfrawVFEVTRQRRIPVVLVTH 188
Cdd:cd03223 116 DEATSALDEESEDR----LYQLLKELGITVISVGH 146
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-40 |
2.70e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 52.89 E-value: 2.70e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 550795390 1 MLTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLF 40
Cdd:COG4178 362 ALALEDLTLRtpdgrPLLEDLSLSLKPGERLLITGPSGSGKSTLL 406
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
10-161 |
3.26e-08 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 51.77 E-value: 3.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLN---DRRCDmlpvETRGIGILFQDALLFDA 86
Cdd:PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDgktATRGD----RSRFMAYLGHLPGLKAD 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 550795390 87 FSVGQNLMLALPAHivGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:PRK13543 97 LSTLENLHFLCGLH--GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
16-166 |
4.17e-08 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 52.27 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLfAWMVGALSAdfKAHGELWLNDRRCDMLPVET-----RGIGILFQD--ALLFDAFS 88
Cdd:PRK11308 34 VSFTLERGKTLAVVGESGCGKSTL-ARLLTMIET--PTGGELYYQGQDLLKADPEAqkllrQKIQIVFQNpyGSLNPRKK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLM--LALPAHIVGRARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLR 165
Cdd:PRK11308 111 VGQILEepLLINTSLSAAERREKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQ 190
|
.
gi 550795390 166 A 166
Cdd:PRK11308 191 A 191
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
28-189 |
5.03e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 52.24 E-value: 5.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 28 LMGPSGSGKSTLFAWMVGaLSADFKahGELWlndrrcdmlPVETRGIGILFQDALLFDAFSVGQNLMLALpAHIVGR-AR 106
Cdd:TIGR03719 36 VLGLNGAGKSTLLRIMAG-VDKDFN--GEAR---------PQPGIKVGYLPQEPQLDPTKTVRENVEEGV-AEIKDAlDR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 107 RNAV----------------EQA-----LETAGLANH---------------YTSDPATLSGGERARVSLLRALLAQPQA 150
Cdd:TIGR03719 103 FNEIsakyaepdadfdklaaEQAelqeiIDAADAWDLdsqleiamdalrcppWDADVTKLSGGERRRVALCRLLLSKPDM 182
|
170 180 190
....*....|....*....|....*....|....*....
gi 550795390 151 LLLDEPFSRLDktlrASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:TIGR03719 183 LLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD 217
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
15-201 |
5.94e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 51.33 E-value: 5.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETRG--IGILFQDAL--LFDAFSVG 90
Cdd:PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFGDYSYRSqrIRMIFQDPStsLNPRQRIS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 91 Q--NLMLALPAHIVGRARRNAVEQALETAGL-ANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRAS 167
Cdd:PRK15112 108 QilDFPLRLNTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQ 187
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 168 FRAWVFEVTRQRRIPVVLVT-------HDEDDI--PPGGEVIE 201
Cdd:PRK15112 188 LINLMLELQEKQGISYIYVTqhlgmmkHISDQVlvMHQGEVVE 230
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-189 |
9.23e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.39 E-value: 9.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA--------PLLHEVNFRVPAGEIVTLMGPSGSGKS-TLFAWMVGALSADFKAH-GELWLNDR-------- 62
Cdd:PRK10261 12 VLAVENLNIAfmqeqqkiAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAGGLVQcDKMLLRRRsrqviels 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 63 ---RCDMLPVETRGIGILFQDAL--LFDAFSVGQNLMLALPAHiVGRARRNAVEQAL---------ETAGLANHYtsdPA 128
Cdd:PRK10261 92 eqsAAQMRHVRGADMAMIFQEPMtsLNPVFTVGEQIAESIRLH-QGASREEAMVEAKrmldqvripEAQTILSRY---PH 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550795390 129 TLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-161 |
9.35e-08 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 50.88 E-value: 9.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLT------IAplLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDM-------- 66
Cdd:COG4152 1 MLELKGLTkrfgdkTA--VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPD---SGEVLWDGEPLDPedrrrigy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 67 LPvETRGigilfqdalLFDAFSVGQNLM-LA----LPAHivgRARRNAvEQALETAGLAnHYTSDPA-TLSGGERARVSL 140
Cdd:COG4152 76 LP-EERG---------LYPKMKVGEQLVyLArlkgLSKA---EAKRRA-DEWLERLGLG-DRANKKVeELSKGNQQKVQL 140
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 141 ------------LrallaqpqalllDEPFSRLD 161
Cdd:COG4152 141 iaallhdpelliL------------DEPFSGLD 161
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-166 |
1.05e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 51.09 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNdrrcdmlpvETRGIGILFQ 79
Cdd:TIGR03719 325 AENLTKAfgdkLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIEIG---------ETVKLAYVDQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 80 --DAL-----LFDAFSVGQNLMLALPAHIVGRArrnaveqaleTAGLANHYTSDP----ATLSGGERARVSLLRALLAQP 148
Cdd:TIGR03719 393 srDALdpnktVWEEISGGLDIIKLGKREIPSRA----------YVGRFNFKGSDQqkkvGQLSGGERNRVHLAKTLKSGG 462
|
170
....*....|....*....
gi 550795390 149 QALLLDEPFSRLD-KTLRA 166
Cdd:TIGR03719 463 NVLLLDEPTNDLDvETLRA 481
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
11-142 |
1.07e-07 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 50.62 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM-------VGALSADFKAHGELWLNDRRcdmlpvetRGIGILFQDALL 83
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLerfydptSGEILLDGVDIRDLNLRWLR--------SQIGLVSQEPVL 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550795390 84 FDAfSVGQNLMLalpahivGRARRNaVEQALETAGLANHY---TSDP-----------ATLSGGERARVSLLR 142
Cdd:cd03249 89 FDG-TIAENIRY-------GKPDAT-DEEVEEAAKKANIHdfiMSLPdgydtlvgergSQLSGGQKQRIAIAR 152
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-161 |
1.11e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 50.41 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVG-----ALSADFkahgeLWLNDRRCDMLPVE- 70
Cdd:CHL00131 7 ILEIKNLHASvnenEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpaykILEGDI-----LFKGESILDLEPEEr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 71 -TRGIGILFQDALLFDAFSVGQNLMLALPAHivgRARRNAVE-----------QALETAGLANHYTSDPAT--LSGGERA 136
Cdd:CHL00131 82 aHLGIFLAFQYPIEIPGVSNADFLRLAYNSK---RKFQGLPEldplefleiinEKLKLVGMDPSFLSRNVNegFSGGEKK 158
|
170 180
....*....|....*....|....*
gi 550795390 137 RVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:CHL00131 159 RNEILQMALLDSELAILDETDSGLD 183
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-133 |
1.22e-07 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 50.79 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVETRGIgilfQD 80
Cdd:COG1129 256 VLEVEGLSVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPAD---SGEIRLDGK-----PVRIRSP----RD 323
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 81 AL---------------LFDAFSVGQNLMLALPAHIvgrARRNAVEQALETAgLANHY-------TSDP----ATLSGG 133
Cdd:COG1129 324 AIragiayvpedrkgegLVLDLSIRENITLASLDRL---SRGGLLDRRRERA-LAEEYikrlrikTPSPeqpvGNLSGG 398
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
13-200 |
1.73e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 50.19 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGELWLNDRRCDMlpveTRGIGILFQ--DALLFDAf 87
Cdd:PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILkptSGSVLIRGEPITKENIREV----RKFVGLVFQnpDDQIFSP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLM-----LALPAHIVgrarRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDK 162
Cdd:PRK13652 95 TVEQDIAfgpinLGLDEETV----AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
|
170 180 190
....*....|....*....|....*....|....*...
gi 550795390 163 TLRASFRAWVFEVTRQRRIPVVLVTHDEDDIPPGGEVI 200
Cdd:PRK13652 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI 208
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
13-188 |
2.55e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 49.70 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL----------SADFKAHGELWLNDRRCDML---P----VETrgig 75
Cdd:PRK13633 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLipsegkvyvdGLDTSDEENLWDIRNKAGMVfqnPdnqiVAT---- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILFQDAllfdAFSvGQNLMLAlPAHIvgRARrnaVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDE 155
Cdd:PRK13633 102 IVEEDV----AFG-PENLGIP-PEEI--RER---VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE 170
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTH 188
Cdd:PRK13633 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
11-39 |
2.66e-07 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 50.20 E-value: 2.66e-07
10 20
....*....|....*....|....*....
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTL 400
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
11-165 |
3.13e-07 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 49.44 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDrrcdmLPVETR------GIGILFQDALLF 84
Cdd:PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLG-----VPVPARarlaraRIGVVPQFDNLD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAFSVGQNLMlalpahIVGRARR-------NAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:PRK13536 127 LEFTVRENLL------VFGRYFGmstreieAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200
|
....*...
gi 550795390 158 SRLDKTLR 165
Cdd:PRK13536 201 TGLDPHAR 208
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
13-161 |
3.34e-07 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 49.50 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGEL---------WLNDRRCDMLPVETR---GIGILFQD 80
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKIsilgqptrqALQKNLVAYVPQSEEvdwSFPVLVED 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 ALLFDAFsvGQNLMLALPAhivgRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:PRK15056 100 VVMMGRY--GHMGWLRRAK----KRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
|
.
gi 550795390 161 D 161
Cdd:PRK15056 174 D 174
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-120 |
3.54e-07 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 49.72 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVET----- 71
Cdd:PRK10790 341 IDIDNVSFAyrddnLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGR-----PLSSlshsv 412
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 72 --RGIGILFQD-ALLFDAFSVgqNLMLalpahivGR-ARRNAVEQALETAGLA 120
Cdd:PRK10790 413 lrQGVAMVQQDpVVLADTFLA--NVTL-------GRdISEEQVWQALETVQLA 456
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-162 |
4.25e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 48.41 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI----APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDmlpvETRGIgi 76
Cdd:PRK13540 1 MLDVIELDFdyhdQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIK----KDLCT-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 77 lFQDALLFDAFSVGQNLMLALpahivgraRRNAV------EQALETAGLAN-----HYTSDP-ATLSGGERARVSLLRAL 144
Cdd:PRK13540 72 -YQKQLCFVGHRSGINPYLTL--------RENCLydihfsPGAVGITELCRlfsleHLIDYPcGLLSSGQKRQVALLRLW 142
|
170
....*....|....*...
gi 550795390 145 LAQPQALLLDEPFSRLDK 162
Cdd:PRK13540 143 MSKAKLWLLDEPLVALDE 160
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
4-142 |
5.55e-07 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 48.26 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTI------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmvgaLSADFK----AHGELWLNDRRCDMLPVET-- 71
Cdd:cd03244 5 FKNVSLryrpnlPPVLKNISFSIKPGEKVGIVGRTGSGKSSL-------LLALFRlvelSSGSILIDGVDISKIGLHDlr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 RGIGILFQDALLFDAfSVGQNLmlalpaHIVGRARRNAVEQALETAGLANHYTSDP-----------ATLSGGERARVSL 140
Cdd:cd03244 78 SRISIIPQDPVLFSG-TIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPggldtvveeggENLSVGQRQLLCL 150
|
..
gi 550795390 141 LR 142
Cdd:cd03244 151 AR 152
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
13-160 |
5.70e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 49.14 E-value: 5.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRrcdmlPVE---TR-----GIGILFQDALLF 84
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQ-----EMRfasTTaalaaGVAIIYQELHLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 85 DAFSVGQNLML-ALPAH--IV--GRARRNAVEQaLETAGLAnhytSDPAT----LSGGERARVSLLRALLAQPQALLLDE 155
Cdd:PRK11288 92 PEMTVAENLYLgQLPHKggIVnrRLLNYEAREQ-LEHLGVD----IDPDTplkyLSIGQRQMVEIAKALARNARVIAFDE 166
|
....*
gi 550795390 156 PFSRL 160
Cdd:PRK11288 167 PTSSL 171
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-191 |
6.01e-07 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 47.06 E-value: 6.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELwlndrrcdmlpvetrgigil 77
Cdd:cd03221 1 IELENLSKTyggkLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIV-------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 78 fqdallfdafSVGQNLMLALpahivgrarrnaVEQaletaglanhytsdpatLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:cd03221 58 ----------TWGSTVKIGY------------FEQ-----------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 158 SRLDktLRAsfRAWVFEVTRQRRIPVVLVTHDED 191
Cdd:cd03221 99 NHLD--LES--IEALEEALKEYPGTVILVSHDRY 128
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-193 |
6.07e-07 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 48.20 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNL-----------TIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLN--DRRCDML 67
Cdd:COG4778 4 LLEVENLsktftlhlqggKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPD---SGSILVRhdGGWVDLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 68 PVETRGIGILFQDALLFdafsVGQNL------------MLALPAHIVGRAR-RNAVEQALETAGLANH-YTSDPATLSGG 133
Cdd:COG4778 81 QASPREILALRRRTIGY----VSQFLrviprvsaldvvAEPLLERGVDREEaRARARELLARLNLPERlWDLPPATFSGG 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 134 ERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVtRQRRIPVVLVTHDEDDI 193
Cdd:COG4778 157 EQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVR 215
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
16-189 |
7.65e-07 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 48.55 E-value: 7.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGE-LWLNDRRCDMLPVETRG----IGILFQDAL--LFDAFS 88
Cdd:PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEvAWLGKDLLGMKDDEWRAvrsdIQMIFQDPLasLNPRMT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQnlMLALP-----AHIVGRARRNAVEQALETAGL----ANHYtsdPATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PRK15079 117 IGE--IIAEPlrtyhPKLSRQEVKDRVKAMMLKVGLlpnlINRY---PHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191
|
170 180 190
....*....|....*....|....*....|
gi 550795390 160 LDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
11-202 |
8.93e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 48.86 E-value: 8.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDM-LPVETRGIGILFQDALLFDAFSV 89
Cdd:TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDIETnLDAVRQSLGMCPQHNILFHHLTV 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLAlpAHIVGRARRNA---VEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRA 166
Cdd:TIGR01257 1021 AEHILFY--AQLKGRSWEEAqleMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 167 SFRAWVFEVTRQRRIpvVLVTHDEDDIPPGGEVIEI 202
Cdd:TIGR01257 1099 SIWDLLLKYRSGRTI--IMSTHHMDEADLLGDRIAI 1132
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-45 |
1.43e-06 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 47.48 E-value: 1.43e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVG 45
Cdd:PRK09580 1 MLSIKDLHVSvedkAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-188 |
1.69e-06 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 47.49 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfKAHGELWLNDRRCD------------ 65
Cdd:TIGR03269 1 IEVKNLTKKfdgkEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-PTSGRIIYHVALCEkcgyverpskvg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 66 ---------MLPVE--------------TRGIGILFQDAL-LFDAFSVGQNLMLALPAhiVGRARRNAVEQA---LETAG 118
Cdd:TIGR03269 80 epcpvcggtLEPEEvdfwnlsdklrrriRKRIAIMLQRTFaLYGDDTVLDNVLEALEE--IGYEGKEAVGRAvdlIEMVQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 119 LANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTH 188
Cdd:TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
7-161 |
1.89e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 47.16 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 7 LTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGELWLNDRRCDMLPVETRGiGILFqdALL 83
Cdd:cd03291 47 LVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELepsEGKIKHSGRISFSSQFSWIMPGTIKE-NIIF--GVS 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 84 FDAF---SVGQNLMLAlpAHIVGRARRNAVeqALETAGLanhytsdpaTLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:cd03291 124 YDEYrykSVVKACQLE--EDITKFPEKDNT--VLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
.
gi 550795390 161 D 161
Cdd:cd03291 191 D 191
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
6-161 |
2.15e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.60 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 6 NLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGELWLNDRRCDMLPVETRGiGILFqdAL 82
Cdd:TIGR01271 435 SLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELepsEGKIKHSGRISFSPQTSWIMPGTIKD-NIIF--GL 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 83 LFDAFSVgqnlmlalpahivgRARRNAVEQALETAGLANH----YTSDPATLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:TIGR01271 512 SYDEYRY--------------TSVIKACQLEEDIALFPEKdktvLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577
|
...
gi 550795390 159 RLD 161
Cdd:TIGR01271 578 HLD 580
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
11-204 |
2.21e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 46.90 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLND-RRCDM--LPVETRGIGILFQDA-LLFDA 86
Cdd:PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGiDTGDFskLQGIRKLVGIVFQNPeTQFVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 FSVGQNLM-----LALPAHIVgrarRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLD 161
Cdd:PRK13644 93 RTVEEDLAfgpenLCLPPIEI----RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLD 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 162 KTLRASFRAWVFEVTRQRRIpVVLVTHDEDDIPPGGEVIEISR 204
Cdd:PRK13644 169 PDSGIAVLERIKKLHEKGKT-IVYITHNLEELHDADRIIVMDR 210
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
13-192 |
2.96e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 46.55 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRrcdMLPVETRG---------IGILFQ--DA 81
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP---TSGTVTIGER---VITAGKKNkklkplrkkVGIVFQfpEH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 82 LLFDA------------FSVGQNlmlalpahivgRARRNAVEqALETAGLANHY-TSDPATLSGGERARVSLLRALLAQP 148
Cdd:PRK13634 97 QLFEEtvekdicfgpmnFGVSEE-----------DAKQKARE-MIELVGLPEELlARSPFELSGGQMRRVAIAGVLAMEP 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 550795390 149 QALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDD 192
Cdd:PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
11-188 |
3.77e-06 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 46.64 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTlfawmVGALSADF--KAHGELWLndrrcDMLPVET-------RGIGILFQDA 81
Cdd:TIGR00958 495 PVLKGLTFTLHPGEVVALVGPSGSGKST-----VAALLQNLyqPTGGQVLL-----DGVPLVQydhhylhRQVALVGQEP 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 82 LLFdAFSVGQNLMLALPahivgRARRNAVEQALETAGLANHYTSDPAT-----------LSGGERARVSLLRALLAQPQA 150
Cdd:TIGR00958 565 VLF-SGSVRENIAYGLT-----DTPDEEIMAAAKAANAHDFIMEFPNGydtevgekgsqLSGGQKQRIAIARALVRKPRV 638
|
170 180 190
....*....|....*....|....*....|....*...
gi 550795390 151 LLLDEPFSRLDKTLRASFRAWvfeVTRQRRiPVVLVTH 188
Cdd:TIGR00958 639 LILDEATSALDAECEQLLQES---RSRASR-TVLLIAH 672
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-168 |
4.15e-06 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 45.48 E-value: 4.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTI------APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDRRCDMLPVET--RG 73
Cdd:cd03369 7 IEVENLSVryapdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDlrSS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNLmlalpaHIVGRARRNAVEQALETAGLANHytsdpatLSGGERARVSLLRALLAQPQALLL 153
Cdd:cd03369 84 LTIIPQDPTLFSG-TIRSNL------DPFDEYSDEEIYGALRVSEGGLN-------LSQGQRQLLCLARALLKRPRVLVL 149
|
170 180
....*....|....*....|...
gi 550795390 154 DEPFSRLD--------KTLRASF 168
Cdd:cd03369 150 DEATASIDyatdaliqKTIREEF 172
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
16-165 |
4.25e-06 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 46.34 E-value: 4.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLndrrCDMlPVETRG------IGILFQDALLFDAFSV 89
Cdd:PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISL----CGE-PVPSRArharqrVGVVPQFDNLDPDFTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLML-----ALPAHivgrARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKTL 164
Cdd:PRK13537 98 RENLLVfgryfGLSAA----AARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
|
.
gi 550795390 165 R 165
Cdd:PRK13537 174 R 174
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-189 |
4.80e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 45.80 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWM--VGALSADFKAHGELW-----LNDRRCDMLPVE 70
Cdd:PRK14258 8 IKVNNLSFYydtqKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLnrMNELESEVRVEGRVEffnqnIYERRVNLNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 71 tRGIGILFQDALLFdAFSVGQNLmlALPAHIVGRARR----NAVEQALETAGL----ANHYTSDPATLSGGERARVSLLR 142
Cdd:PRK14258 88 -RQVSMVHPKPNLF-PMSVYDNV--AYGVKIVGWRPKleidDIVESALKDADLwdeiKHKIHKSALDLSGGQQQRLCIAR 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 550795390 143 ALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-39 |
5.81e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 46.17 E-value: 5.81e-06
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:PRK11176 342 IEFRNVTFTypgkevPALRNINFKIPAGKTVALVGRSGSGKSTI 385
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
5-57 |
6.96e-06 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 44.95 E-value: 6.96e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 5 KNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGEL 57
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
16-188 |
7.07e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.89 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETR-GIGILFQdallfdAFS------ 88
Cdd:NF033858 285 VSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPA---SEGEAWLFGQPVDAGDIATRrRVGYMSQ------AFSlygelt 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 89 VGQNLML-ALPAHIVGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSL------------LrallaqpqalllDE 155
Cdd:NF033858 356 VRQNLELhARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLavavihkpelliL------------DE 423
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 156 PFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTH 188
Cdd:NF033858 424 PTSGVDPVARDMFWRLLIELSREDGVTIFISTH 456
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
10-193 |
7.46e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 45.38 E-value: 7.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 10 APLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGE-LW----LNDRRCDMLPVETRgIGILFQDA--- 81
Cdd:PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAvLWqgkpLDYSKRGLLALRQQ-VATVFQDPeqq 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 82 LLFD------AFSVgQNLMLAlPAHIvgrARRnaVEQALeTAGLANHYTSDP-ATLSGGERARVSLLRALLAQPQALLLD 154
Cdd:PRK13638 90 IFYTdidsdiAFSL-RNLGVP-EAEI---TRR--VDEAL-TLVDAQHFRHQPiQCLSHGQKKRVAIAGALVLQARYLLLD 161
|
170 180 190
....*....|....*....|....*....|....*....
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTRQRRiPVVLVTHDEDDI 193
Cdd:PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLI 199
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
13-191 |
7.54e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 45.50 E-value: 7.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVG----------ALSADFKAHGELWLNDRrcdmlpvetrgIGILFQD-- 80
Cdd:PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGiylpqrgrvkVMGREVNAENEKWVRSK-----------VGLVFQDpd 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 -----ALLFDAFSVG-QNLMLAlPAHIVGRarrnaVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLD 154
Cdd:PRK13647 90 dqvfsSTVWDDVAFGpVNMGLD-KDEVERR-----VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
|
170 180 190
....*....|....*....|....*....|....*..
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDED 191
Cdd:PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQGKT-VIVATHDVD 199
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-206 |
8.67e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 45.71 E-value: 8.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGElwlndrrcdmlpVETRG-I 74
Cdd:TIGR00957 637 ITVHNATFTwardlpPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGH------------VHMKGsV 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQDALLFDAfSVGQNLMLALPAHivgrarRNAVEQALETAGLANHYTSDPA-----------TLSGGERARVSLLRA 143
Cdd:TIGR00957 702 AYVPQQAWIQND-SLRENILFGKALN------EKYYQQVLEACALLPDLEILPSgdrteigekgvNLSGGQKQRVSLARA 774
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 144 LLAQPQALLLDEPFSRLDktlrASFRAWVFE--------VTRQRRIpvvLVTHDEDDIP--------PGGEVIEISRWQ 206
Cdd:TIGR00957 775 VYSNADIYLFDDPLSAVD----AHVGKHIFEhvigpegvLKNKTRI---LVTHGISYLPqvdviivmSGGKISEMGSYQ 846
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-140 |
1.02e-05 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 44.90 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTI---APL-----LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGE-LWLNDRrcDML---P 68
Cdd:COG4170 3 LLDIRNLTIeidTPQgrvkaVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNWHVTADrFRWNGI--DLLklsP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 69 VE-----TRGIGILFQDAL--LFDAFSVGQNLMLALPAHIVG-------RARRNAVEQALETAGLANH---YTSDPATLS 131
Cdd:COG4170 81 RErrkiiGREIAMIFQEPSscLDPSAKIGDQLIEAIPSWTFKgkwwqrfKWRKKRAIELLHRVGIKDHkdiMNSYPHELT 160
|
....*....
gi 550795390 132 GGERARVSL 140
Cdd:COG4170 161 EGECQKVMI 169
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
13-193 |
1.06e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 44.82 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGELWLNDRRCDMLPVETRGIGILFQ--DALLFDAf 87
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLkpsSGTITIAGYHITPETGNKNLKKLRKKVSLVFQfpEAQLFEN- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 88 SVGQNLMLAlPAHIvGRARRNAVEQALE---TAGLANHYTS-DPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKT 163
Cdd:PRK13641 102 TVLKDVEFG-PKNF-GFSEDEAKEKALKwlkKVGLSEDLISkSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
|
170 180 190
....*....|....*....|....*....|
gi 550795390 164 LRASFRAwVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13641 180 GRKEMMQ-LFKDYQKAGHTVILVTHNMDDV 208
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
11-161 |
1.33e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.11 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHgelwlndrrcdmlpVETRG-IGILFQDALLFDAfSV 89
Cdd:PLN03130 631 PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS--------------VVIRGtVAYVPQVSWIFNA-TV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 90 GQNLMLALPahiVGRARrnaVEQALETAGLANHYTSDPA-----------TLSGGERARVSLLRALLAQPQALLLDEPFS 158
Cdd:PLN03130 696 RDNILFGSP---FDPER---YERAIDVTALQHDLDLLPGgdlteigergvNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
|
...
gi 550795390 159 RLD 161
Cdd:PLN03130 770 ALD 772
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
11-188 |
1.42e-05 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 44.38 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTlfawmVGALSADF--KAHGELWLNDRRCDMLPVE--TRGIGILFQDALLFdA 86
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKST-----VVALLENFyqPQGGQVLLDGKPISQYEHKylHSKVSLVGQEPVLF-A 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 FSVGQNLMLALPAHIVGRARRNAVEQALET--AGLANHYTSDP----ATLSGGERARVSLLRALLAQPQALLLDEPFSRL 160
Cdd:cd03248 102 RSLQDNIAYGLQSCSFECVKEAAQKAHAHSfiSELASGYDTEVgekgSQLSGGQKQRVAIARALIRNPQVLILDEATSAL 181
|
170 180
....*....|....*....|....*...
gi 550795390 161 DKTLRASFRAWVFEVTRQRRipVVLVTH 188
Cdd:cd03248 182 DAESEQQVQQALYDWPERRT--VLVIAH 207
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
13-39 |
1.52e-05 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 44.30 E-value: 1.52e-05
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTL 68
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
8-161 |
1.53e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.97 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 8 TIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfkaHGElwlndrrcdMLPVETRG-IGILFQDALLFDA 86
Cdd:PLN03232 628 TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-----HAE---------TSSVVIRGsVAYVPQVSWIFNA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 fSVGQNLMLA--LPAHIVGRA-RRNAVEQALETagLANHYTSD----PATLSGGERARVSLLRALLAQPQALLLDEPFSR 159
Cdd:PLN03232 694 -TVRENILFGsdFESERYWRAiDVTALQHDLDL--LPGRDLTEigerGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
|
..
gi 550795390 160 LD 161
Cdd:PLN03232 771 LD 772
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-95 |
1.99e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 44.53 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAwmvgALSADFkAHGElWLNDRRCDMLPV------- 69
Cdd:PRK13549 5 LLEMKNITKTfggvKALDNVSLKVRAGEIVSLCGENGAGKSTLMK----VLSGVY-PHGT-YEGEIIFEGEELqasnird 78
|
90 100
....*....|....*....|....*..
gi 550795390 70 -ETRGIGILFQDALLFDAFSVGQNLML 95
Cdd:PRK13549 79 tERAGIAIIHQELALVKELSVLENIFL 105
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
13-93 |
2.81e-05 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 44.00 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLP---VETRGIGILFQDALLFDAFSV 89
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDhklAAQLGIGIIYQELSVIDELTV 97
|
....
gi 550795390 90 GQNL 93
Cdd:PRK09700 98 LENL 101
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
13-39 |
3.76e-05 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 42.90 E-value: 3.76e-05
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTL 64
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
12-50 |
3.96e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 43.57 E-value: 3.96e-05
10 20 30
....*....|....*....|....*....|....*....
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD 50
Cdd:PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD 377
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
13-193 |
4.73e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 43.15 E-value: 4.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD-------FKAhgelWLNDRRCDMLPVET-------------- 71
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDtgtiewiFKD----EKNKKKTKEKEKVLeklviqktrfkkik 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 ------RGIGILFQDA--LLFDAfSVGQNLMLAlpAHIVGRARRNAVEQA---LETAGLANHY-TSDPATLSGGERARVS 139
Cdd:PRK13651 99 kikeirRRVGVVFQFAeyQLFEQ-TIEKDIIFG--PVSMGVSKEEAKKRAakyIELVGLDESYlQRSPFELSGGQKRRVA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 140 LLRALLAQPQALLLDEPFSRLD-----KTLRasfrawVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13651 176 LAGILAMEPDFLVFDEPTAGLDpqgvkEILE------IFDNLNKQGKTIILVTHDLDNV 228
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-95 |
6.23e-05 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 43.09 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA-----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLPVETR---G 73
Cdd:COG3845 258 LEVENLSVRddrgvPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPP---ASGSIRLDGEDITGLSPRERrrlG 334
|
90 100
....*....|....*....|....*
gi 550795390 74 IGILFQDAL---LFDAFSVGQNLML 95
Cdd:COG3845 335 VAYIPEDRLgrgLVPDMSVAENLIL 359
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
13-95 |
7.57e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 42.89 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGalsadFKAHGElWLNDRRCDMLPV--------ETRGIGILFQDALLF 84
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-----VYPHGT-WDGEIYWSGSPLkasnirdtERAGIVIIHQELTLV 90
|
90
....*....|.
gi 550795390 85 DAFSVGQNLML 95
Cdd:TIGR02633 91 PELSVAENIFL 101
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
13-193 |
7.92e-05 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 42.30 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLND-------RRCDMLPVETRGIGILFQdallFD 85
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDyaipanlKKIKEVKRLRKEIGLVFQ----FP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 86 AFSVGQNLM---LAL-PAHIvGRARRNA---VEQALETAGLANHYTS-DPATLSGGERARVSLLRALLAQPQALLLDEPF 157
Cdd:PRK13645 100 EYQLFQETIekdIAFgPVNL-GENKQEAykkVPELLKLVQLPEDYVKrSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 550795390 158 SRLDKTLRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13645 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV 214
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
11-138 |
9.09e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.84 E-value: 9.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PL-LHEVNFRVPAGEIVTLMGPSGSGKSTL---FAWMV----GALSADFKAHGELWLND--RRCDMLPvetrgigilfQD 80
Cdd:PTZ00243 1323 PLvLRGVSFRIAPREKVGIVGRTGSGKSTLlltFMRMVevcgGEIRVNGREIGAYGLRElrRQFSMIP----------QD 1392
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 550795390 81 ALLFDAfSVGQNL---MLALPAHivgrarrnaVEQALETAGLANHYTSDpatlSGGERARV 138
Cdd:PTZ00243 1393 PVLFDG-TVRQNVdpfLEASSAE---------VWAALELVGLRERVASE----SEGIDSRV 1439
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
11-142 |
1.37e-04 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 42.01 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGAL---SADFKAHGeLWLNDRRCDmlpvETRG-IGILFQDALLFDA 86
Cdd:PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFdvsEGDIRFHD-IPLTKLQLD----SWRSrLAVVSQTPFLFSD 403
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 fSVGQNLMLALPAhivgrARRNAVEQAletAGLAN-H---------YTSDPA----TLSGGERARVSLLR 142
Cdd:PRK10789 404 -TVANNIALGRPD-----ATQQEIEHV---ARLASvHddilrlpqgYDTEVGergvMLSGGQKQRISIAR 464
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
30-189 |
1.58e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 41.64 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 30 GPSGSGKSTLFAWMVGaLSADFkaHGELWLNDrrcdmlpvetrG--IGILFQDALLFDAFSVGQNLMLALpAHIVG-RAR 106
Cdd:PRK11819 40 GLNGAGKSTLLRIMAG-VDKEF--EGEARPAP-----------GikVGYLPQEPQLDPEKTVRENVEEGV-AEVKAaLDR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 107 RNAV----------------EQA-----LETAGLANHYT---------------SDPATLSGGERARVSLLRALLAQPQA 150
Cdd:PRK11819 105 FNEIyaayaepdadfdalaaEQGelqeiIDAADAWDLDSqleiamdalrcppwdAKVTKLSGGERRRVALCRLLLEKPDM 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 550795390 151 LLLDEPFSRLDktlrASFRAWV------FEVTrqrripVVLVTHD 189
Cdd:PRK11819 185 LLLDEPTNHLD----AESVAWLeqflhdYPGT------VVAVTHD 219
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-50 |
1.62e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 41.80 E-value: 1.62e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 2 LTVKNLT----IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAD 50
Cdd:PRK15064 320 LEVENLTkgfdNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD 372
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-189 |
2.35e-04 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 40.87 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIA----PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkaHGELWLNDR-RCDMLPVEtrgig 75
Cdd:PRK09544 4 LVSLENVSVSfgqrRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKlRIGYVPQK----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 iLFQDALLfdAFSVGQNLMLAlPAhivgrARRNAVEQALETAGlANHYTSDP-ATLSGGERARVSLLRALLAQPQALLLD 154
Cdd:PRK09544 76 -LYLDTTL--PLTVNRFLRLR-PG-----TKKEDILPALKRVQ-AGHLIDAPmQKLSGGETQRVLLARALLNRPQLLVLD 145
|
170 180 190
....*....|....*....|....*....|....*
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-189 |
3.37e-04 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 40.56 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 1 MLTVKNLTIAPLLHE--------VNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKAHGE-LWLNDrrCDMLPVET 71
Cdd:PRK15093 3 LLDIRNLTIEFKTSDgwvkavdrVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADrMRFDD--IDLLRLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 72 R--------GIGILFQD--ALLFDAFSVGQNLMLALPA--------HIVGRARRNAVEqALETAGLANHY---TSDPATL 130
Cdd:PRK15093 81 RerrklvghNVSMIFQEpqSCLDPSERVGRQLMQNIPGwtykgrwwQRFGWRKRRAIE-LLHRVGIKDHKdamRSFPYEL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 550795390 131 SGGERARVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIPVVLVTHD 189
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
13-39 |
3.64e-04 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 40.46 E-value: 3.64e-04
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTT 64
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
13-156 |
3.76e-04 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 40.25 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLNDRRCDMLP---VETRGIGILFQDALLFDAFSV 89
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQtakIMREAVAIVPEGRRVFSRMTV 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 550795390 90 GQNLMLAlpahivGR-ARRNAVEQALETA-----GLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEP 156
Cdd:PRK11614 98 EENLAMG------GFfAERDQFQERIKWVyelfpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-156 |
4.81e-04 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 40.37 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTiAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSadfKAHGELWLNDRrcdmlPVETR----GI--G 75
Cdd:PRK10762 258 LKVDNLS-GPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGH-----EVVTRspqdGLanG 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 76 ILF------QDALLFDaFSVGQNLML-ALP--AHIVGRARRNAVEQALET-AGLANHYTSDP----ATLSGGERARVSLL 141
Cdd:PRK10762 329 IVYisedrkRDGLVLG-MSVKENMSLtALRyfSRAGGSLKHADEQQAVSDfIRLFNIKTPSMeqaiGLLSGGNQQKVAIA 407
|
170
....*....|....*
gi 550795390 142 RALLAQPQALLLDEP 156
Cdd:PRK10762 408 RGLMTRPKVLILDEP 422
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
11-193 |
4.86e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 40.11 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLND-------RRCDMLPVETRgIGILFQ--DA 81
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDtlitstsKNKDIKQIRKK-VGLVFQfpES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 82 LLFD-------AFSvGQNLmlalpahivGRARRNAVEQALETAGLA----NHYTSDPATLSGGERARVSLLRALLAQPQA 150
Cdd:PRK13649 97 QLFEetvlkdvAFG-PQNF---------GVSQEEAEALAREKLALVgiseSLFEKNPFELSGGQMRRVAIAGILAMEPKI 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 550795390 151 LLLDEPFSRLDKTLRASFRAwVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13649 167 LVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMDDV 208
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-168 |
6.88e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 39.89 E-value: 6.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkahGELWLNDRRCDMLPVET--RG 73
Cdd:TIGR01271 1218 MDVQGLTAKyteagrAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE----GEIQIDGVSWNSVTLQTwrKA 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLF--------DAFSVGQNLMLALPAHIVGraRRNAVEQ-------ALETAGLanhytsdpaTLSGGERARV 138
Cdd:TIGR01271 1294 FGVIPQKVFIFsgtfrknlDPYEQWSDEEIWKVAEEVG--LKSVIEQfpdkldfVLVDGGY---------VLSNGHKQLM 1362
|
170 180 190
....*....|....*....|....*....|....*...
gi 550795390 139 SLLRALLAQPQALLLDEPFSRLD--------KTLRASF 168
Cdd:TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDpvtlqiirKTLKQSF 1400
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
15-187 |
9.52e-04 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 39.42 E-value: 9.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 15 EVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKahGELWLNDRRCD-------------MLPVETRGIGILFQda 81
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE--GNVFINGKPVDirnpaqairagiaMVPEDRKRHGIVPI-- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 82 llfdaFSVGQNLMLALPAHIVGRARRN-AVEQALETAGLANHY--TSDP----ATLSGGERARVSLLRALLAQPQALLLD 154
Cdd:TIGR02633 354 -----LGVGKNITLSVLKSFCFKMRIDaAAELQIIGSAIQRLKvkTASPflpiGRLSGGNQQKAVLAKMLLTNPRVLILD 428
|
170 180 190
....*....|....*....|....*....|...
gi 550795390 155 EPFSRLDKTLRASFRAWVFEVTrQRRIPVVLVT 187
Cdd:TIGR02633 429 EPTRGVDVGAKYEIYKLINQLA-QEGVAIIVVS 460
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
9-179 |
9.83e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 39.57 E-value: 9.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 9 IAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmvgaLSADFK----AHGELWLNDrrCDM----LPVETRGIGILFQD 80
Cdd:PLN03232 1248 LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM-------LNALFRivelEKGRIMIDD--CDVakfgLTDLRRVLSIIPQS 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 81 ALLF--------DAFSVGQN--LMLALP-AHIVGRARRNAVeqaletaGLANHYTSDPATLSGGERARVSLLRALLAQPQ 149
Cdd:PLN03232 1319 PVLFsgtvrfniDPFSEHNDadLWEALErAHIKDVIDRNPF-------GLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391
|
170 180 190
....*....|....*....|....*....|....*...
gi 550795390 150 ALLLDEPFSRLD--------KTLRASFRAWVFEVTRQR 179
Cdd:PLN03232 1392 ILVLDEATASVDvrtdsliqRTIREEFKSCTMLVIAHR 1429
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
13-46 |
9.97e-04 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 39.34 E-value: 9.97e-04
10 20 30
....*....|....*....|....*....|....
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGA 46
Cdd:NF033858 17 LDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGA 50
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
13-39 |
1.32e-03 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 39.10 E-value: 1.32e-03
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTL 66
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
13-39 |
1.37e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.00 E-value: 1.37e-03
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTL 43
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
13-193 |
1.50e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 38.61 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADFKA--HGELWLNDRRCD--MLPVETRgIGILFQ--DALLFDA 86
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTvtVDDITITHKTKDkyIRPVRKR-IGMVFQfpESQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 87 fSVGQNLMLAlPAHI---VGRARRNAVEQALETAGLANHYTSDPATLSGGERARVSLLRALLAQPQALLLDEPFSRLDKT 163
Cdd:PRK13646 102 -TVEREIIFG-PKNFkmnLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179
|
170 180 190
....*....|....*....|....*....|
gi 550795390 164 LRASFRAWVFEVTRQRRIPVVLVTHDEDDI 193
Cdd:PRK13646 180 SKRQVMRLLKSLQTDENKTIILVSHDMNEV 209
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-168 |
1.63e-03 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 38.30 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 2 LTVKNLTIA------PLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkahGELWLNDRRCDMLPVET--RG 73
Cdd:cd03289 3 MTVKDLTAKyteggnAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE----GDIQIDGVSWNSVPLQKwrKA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 74 IGILFQDALLFDAfSVGQNLmlalpaHIVGRARRNAVEQALETAGLANHYTSDPA-----------TLSGGERARVSLLR 142
Cdd:cd03289 79 FGVIPQKVFIFSG-TFRKNL------DPYGKWSDEEIWKVAEEVGLKSVIEQFPGqldfvlvdggcVLSHGHKQLMCLAR 151
|
170 180 190
....*....|....*....|....*....|....
gi 550795390 143 ALLAQPQALLLDEPFSRLD--------KTLRASF 168
Cdd:cd03289 152 SVLSKAKILLLDEPSAHLDpityqvirKTLKQAF 185
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-95 |
1.69e-03 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 38.45 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 4 VKNLTIAPLlhevnfRVPAGEIVTLMGPSGSGKSTLFAWMVGALSADfkAHGELWLNDRRCDMLPVETR--GIGILFQDA 81
Cdd:PRK10762 17 VKALSGAAL------NVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVTFNGPKSSQeaGIGIIHQEL 88
|
90
....*....|....
gi 550795390 82 LLFDAFSVGQNLML 95
Cdd:PRK10762 89 NLIPQLTIAENIFL 102
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
11-39 |
2.16e-03 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 37.61 E-value: 2.16e-03
10 20
....*....|....*....|....*....
gi 550795390 11 PLLHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTL 49
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
13-204 |
3.28e-03 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 37.52 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGALSAdfkAHGELWLND---------RRCDMLPVET---------RGI 74
Cdd:PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS---KYGTIQVGDiyigdkknnHELITNPYSKkiknfkelrRRV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 75 GILFQ--DALLFDAfSVGQNLMLALPAhiVGRARRNAVEQA---LETAGLANHYTS-DPATLSGGERARVSLLRALLAQP 148
Cdd:PRK13631 119 SMVFQfpEYQLFKD-TIEKDIMFGPVA--LGVKKSEAKKLAkfyLNKMGLDDSYLErSPFGLSGGQKRRVAIAGILAIQP 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 550795390 149 QALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIpVVLVTHDEDDI-PPGGEVIEISR 204
Cdd:PRK13631 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKT-VFVITHTMEHVlEVADEVIVMDK 251
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
12-58 |
3.64e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 37.81 E-value: 3.64e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 550795390 12 LLHEVNFRVPAGEIVTLMGPSGSGKSTLfawmvgalsadFKAHGELW 58
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKSSL-----------FRILGELW 502
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
13-39 |
4.48e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 37.69 E-value: 4.48e-03
10 20
....*....|....*....|....*..
gi 550795390 13 LHEVNFRVPAGEIVTLMGPSGSGKSTL 39
Cdd:TIGR00630 624 LKNITVSIPLGLFTCITGVSGSGKSTL 650
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
127-204 |
4.57e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 36.82 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 127 PATLSGGERA------RVSLLRALLAQPQALLLDEPFSRLDKTLRASFRAWVFEVTRQRRIP-VVLVTHDEDDIPPGGEV 199
Cdd:cd03240 113 RGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFqLIVITHDEELVDAADHI 192
|
....*
gi 550795390 200 IEISR 204
Cdd:cd03240 193 YRVEK 197
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
16-141 |
8.43e-03 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 36.49 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550795390 16 VNFRVPAGEIVTLMGPSGSGKSTlFAWMVGALSADFKahGELWLNDRRCDML-PVETRG-IGILFQDALLFDAFsVGQNL 93
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKST-LAMLLTGLYQPQS--GEILLDGKPVTAEqPEDYRKlFSAVFTDFHLFDQL-LGPEG 417
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 550795390 94 MLALPAhivgrarrnAVEQALETAGLANHYTSDPAT-----LSGGERARVSLL 141
Cdd:PRK10522 418 KPANPA---------LVEKWLERLKMAHKLELEDGRisnlkLSKGQKKRLALL 461
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-63 |
9.61e-03 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 36.43 E-value: 9.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 550795390 2 LTVKNLTIAPLLHEVNFRVPAGEIVTLMGPSGSGKSTLFAWMVGalsADFKAHGELWLNDRR 63
Cdd:PRK11288 258 LRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYG---ATRRTAGQVYLDGKP 316
|
|
| |
