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Conserved domains on  [gi|550796828|ref|WP_022652312|]
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MULTISPECIES: DUF1778 domain-containing protein [Enterobacterales]

Protein Classification

DUF1778 domain-containing protein( domain architecture ID 10008563)

DUF1778 domain-containing protein similar to Klebsiella pneumoniae protein KacA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
1-89 1.43e-24

Uncharacterized conserved protein, DUF1778 family [Function unknown];


:

Pssm-ID: 443551  Cd Length: 89  Bit Score: 87.90  E-value: 1.43e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550796828  1 MSALKKQRIDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVIDQHRRLLLNEESWNLVMDAIINPPAPNDRLKR 80
Cdd:COG4453   1 TTATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKR 80


                ....*....
gi 550796828 81 AANRLRELE 89
Cdd:COG4453  81 ALKRYAPWE 89
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
1-89 1.43e-24

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 87.90  E-value: 1.43e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550796828  1 MSALKKQRIDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVIDQHRRLLLNEESWNLVMDAIINPPAPNDRLKR 80
Cdd:COG4453   1 TTATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKR 80


                ....*....
gi 550796828 81 AANRLRELE 89
Cdd:COG4453  81 ALKRYAPWE 89
DUF1778 pfam08681
Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The ...
 9-82 2.19e-18

Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.


Pssm-ID: 462557  Cd Length: 75  Bit Score: 71.88  E-value: 2.19e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550796828   9 IDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVIDQHRRLLLNEESWNLVMDAIINPPAPNDRLKRAA 82
Cdd:pfam08681  1 LELRISPEAKELLDRAAALSGKTLTDFVLEAALEAAEKVIEDHERIRLSEEDFQAFVAALDNPPKPNPRLLKAA 74
 
Name Accession Description Interval E-value
COG4453 COG4453
Uncharacterized conserved protein, DUF1778 family [Function unknown];
1-89 1.43e-24

Uncharacterized conserved protein, DUF1778 family [Function unknown];


Pssm-ID: 443551  Cd Length: 89  Bit Score: 87.90  E-value: 1.43e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 550796828  1 MSALKKQRIDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVIDQHRRLLLNEESWNLVMDAIINPPAPNDRLKR 80
Cdd:COG4453   1 TTATKTARINLRISPEQKALIDRAAALSGKTLTDFVLEAALEAAEEVLLDQRLIRLSEEDFEAFLAALDNPPAPNPRLKR 80


                ....*....
gi 550796828 81 AANRLRELE 89
Cdd:COG4453  81 ALKRYAPWE 89
DUF1778 pfam08681
Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The ...
 9-82 2.19e-18

Protein of unknown function (DUF1778); This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.


Pssm-ID: 462557  Cd Length: 75  Bit Score: 71.88  E-value: 2.19e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 550796828   9 IDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVIDQHRRLLLNEESWNLVMDAIINPPAPNDRLKRAA 82
Cdd:pfam08681  1 LELRISPEAKELLDRAAALSGKTLTDFVLEAALEAAEKVIEDHERIRLSEEDFQAFVAALDNPPKPNPRLLKAA 74
DUF6290 pfam19807
Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, ...
 9-49 6.45e-04

Family of unknown function (DUF6290); This family of proteins is functionally uncharacterized, they are predominantly found in bacteria but also in viruses. Proteins in this family are approximately 80 amino acids in length and presumably contain a ribbon-helix-helix DNA-binding motif.


Pssm-ID: 437639  Cd Length: 72  Bit Score: 34.84  E-value: 6.45e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 550796828   9 IDLRLNEDDKHMIEEAAAMTNQSISQFMVSTASERAAEVID 49
Cdd:pfam19807  4 ISVRLNEEEEELIKKYAKLKGISLSELIRQALLEKIEDEYD 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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