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Conserved domains on  [gi|552490406|ref|WP_022991912|]
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MULTISPECIES: polymer-forming cytoskeletal protein [Marinobacter]

Protein Classification

polymer-forming cytoskeletal protein( domain architecture ID 10004140)

polymer-forming cytoskeletal protein similar to Caulobacter crescentus cytoskeletal bactofilin BacA that mediates polar localization of a cell wall synthase

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
6-125 1.18e-33

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


:

Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 114.61  E-value: 1.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552490406   6 KQKPRRSPGHFDTLISGKTTVEGDVHFSGGLHVDGTIKGRVVAeegsDAVVRLSEVGEIVGDVVAPHIIINGKVKGDVHA 85
Cdd:COG1664    3 KKKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA----EGTLVIGEGGVVEGDIEADNVVINGTVEGNITA 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 552490406  86 SAHLELAEKAVVTGNVYYQLIEMAMGASVNGNLVRKDETS 125
Cdd:COG1664   79 SEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEA 118
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
6-125 1.18e-33

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 114.61  E-value: 1.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552490406   6 KQKPRRSPGHFDTLISGKTTVEGDVHFSGGLHVDGTIKGRVVAeegsDAVVRLSEVGEIVGDVVAPHIIINGKVKGDVHA 85
Cdd:COG1664    3 KKKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA----EGTLVIGEGGVVEGDIEADNVVINGTVEGNITA 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 552490406  86 SAHLELAEKAVVTGNVYYQLIEMAMGASVNGNLVRKDETS 125
Cdd:COG1664   79 SEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEA 118
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 26-118 1.94e-26

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 94.79  E-value: 1.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552490406   26 VEGDVHFSGGLHVDGTIKGRVVaeegSDAVVRLSEVGEIVGDVVAPHIIINGKVKGDVHASAHLELAEKAVVTGNVYYQL 105
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNIT----SKGTLVIGEGGRVEGDIKAESVVIAGTVEGNITASEKLELLSTARVEGDIKTGS 76

                          90
                  ....*....|...
gi 552490406  106 IEMAMGASVNGNL 118
Cdd:pfam04519  77 LEIEEGAVFEGRC 89
 
Name Accession Description Interval E-value
CcmA COG1664
Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];
6-125 1.18e-33

Cytoskeletal protein CcmA, bactofilin family [Cytoskeleton];


Pssm-ID: 441270 [Multi-domain]  Cd Length: 129  Bit Score: 114.61  E-value: 1.18e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552490406   6 KQKPRRSPGHFDTLISGKTTVEGDVHFSGGLHVDGTIKGRVVAeegsDAVVRLSEVGEIVGDVVAPHIIINGKVKGDVHA 85
Cdd:COG1664    3 KKKSAAESEGITTVIGEGTTIKGDITSEGDLRIDGTVEGDITA----EGTLVIGEGGVVEGDIEADNVVINGTVEGNITA 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 552490406  86 SAHLELAEKAVVTGNVYYQLIEMAMGASVNGNLVRKDETS 125
Cdd:COG1664   79 SEKLELLSTARVEGDITAGSLEIEEGAVFEGKCEMGEDEA 118
Bactofilin pfam04519
Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of ...
 26-118 1.94e-26

Polymer-forming cytoskeletal; This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.


Pssm-ID: 461340 [Multi-domain]  Cd Length: 89  Bit Score: 94.79  E-value: 1.94e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552490406   26 VEGDVHFSGGLHVDGTIKGRVVaeegSDAVVRLSEVGEIVGDVVAPHIIINGKVKGDVHASAHLELAEKAVVTGNVYYQL 105
Cdd:pfam04519   1 IEGDISFEGDLRIDGKVEGNIT----SKGTLVIGEGGRVEGDIKAESVVIAGTVEGNITASEKLELLSTARVEGDIKTGS 76

                          90
                  ....*....|...
gi 552490406  106 IEMAMGASVNGNL 118
Cdd:pfam04519  77 LEIEEGAVFEGRC 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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