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Conserved domains on  [gi|552500088|ref|WP_022991974|]
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MULTISPECIES: peptidoglycan-binding domain-containing protein [Marinobacter]

Protein Classification

peptidoglycan-binding domain-containing protein( domain architecture ID 10477928)

peptidoglycan-binding domain-containing protein may be involved in bacterial cell wall degradation, similar to Vibrio cholerae type VI secretion system (T6SS) effector protein VgrG3 and bacteriophage phi KZ lytic transglycosylase gp144

CATH:  1.10.530.10
Gene Ontology:  GO:0042834

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 28-84 3.51e-10

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


:

Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 52.13  E-value: 3.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 552500088   28 QANEVVALKHALYGAGYDITNVSPSMDDKTRAELTRFQKDNGLEATGILNEETERAL 84
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
 
Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 28-84 3.51e-10

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 52.13  E-value: 3.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 552500088   28 QANEVVALKHALYGAGYDITNVSPSMDDKTRAELTRFQKDNGLEATGILNEETERAL 84
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 30-85 3.98e-08

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 47.21  E-value: 3.98e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 552500088  30 NEVVALKHALYGAGYDITNVSPSMDDKTRAELTRFQKDNGLEATGILNEETERALG 85
Cdd:COG3409   13 EDVRELQQRLNALGYYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALR 68
 
Name Accession Description Interval E-value
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 28-84 3.51e-10

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 52.13  E-value: 3.51e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 552500088   28 QANEVVALKHALYGAGYDITNVSPSMDDKTRAELTRFQKDNGLEATGILNEETERAL 84
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLAAL 57
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 30-85 3.98e-08

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 47.21  E-value: 3.98e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 552500088  30 NEVVALKHALYGAGYDITNVSPSMDDKTRAELTRFQKDNGLEATGILNEETERALG 85
Cdd:COG3409   13 EDVRELQQRLNALGYYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALR 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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