|
Name |
Accession |
Description |
Interval |
E-value |
| ArsO_flavin_mono |
NF040505 |
ArsO family NAD(P)H-dependent flavin-containing monooxygenase; All members of the seed ... |
2-320 |
2.15e-169 |
|
ArsO family NAD(P)H-dependent flavin-containing monooxygenase; All members of the seed alignment for this HMM, including founding member ArsO (ABB70173.1), are encoded in arsenic resistance islands. However, protein functions in this family maybe both variable and promiscuous. ArsO is related to the flavoprotein CzcO (see PMID:12100555), which was found to modestly enhance the activity of cation diffusion facilitator CzcD.
Pssm-ID: 439724 [Multi-domain] Cd Length: 346 Bit Score: 474.40 E-value: 2.15e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 2 LDCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRHAWPSLTLFSNSASSNLPGLPMP--HHDGFPPASHVIDYF 79
Cdd:NF040505 1 VDVVVIGGGQAGLAAAYFLRRTGLSFVILDAQPAPGGAWQHGWDSLRLFSPAAWSSLPGWPMPaqPGEGYPTRDHVVDYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 80 TRYEQRYDLPVRRPVRVQEVTHDGERFHVTTDDEHLTARTVVAATGTWSSPFVPYYPG--AFSGRQWHSAVYPGPDPFQG 157
Cdd:NF040505 81 TAYEQRYALPVQRPVRVDRVERDGGGLRVETDAGDWRARAVISATGTWSRPFIPAYPGreLFTGRQLHSAHYRSPEPFAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 158 ESVAVVGAGNSGSQIAAElvLSGV-DTTWFTAKPPRWMPDDVDGRVLFQRNRARLNAMMRGEPDPGADTNLGDIVVVPPV 236
Cdd:NF040505 161 KRVLVVGGGNSGAQILAE--VSKVaETTWVTLRPPRFLPDDVDGRVLFERATARLKAQQEGRTDDGPVGGLGDIVMVPPV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 237 KQARDEGLLEASPMFSSL----------DEVEADHLIWCTGFRPALGPFREL----LDGRTPT-------VTGLFLVGYG 295
Cdd:NF040505 239 REARDRGVLHAVPPFTRLtatgvvwadgTEAAVDAVIWCTGFRPALDHLRPLglvgPDGRVAVegtravkEPRLWLVGYG 318
|
330 340
....*....|....*....|....*
gi 552764235 296 TWTGPGSATITGVSPFAKQTAGDIA 320
Cdd:NF040505 319 DWTGPASATLIGVGRTARAAVREIA 343
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
1-305 |
4.54e-78 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 244.39 E-value: 4.54e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 1 MLDCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRH-AWPSLTLFSNSASSNLPGLPMPHHDG-FPPASHVIDY 78
Cdd:COG2072 6 HVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGGTWRDnRYPGLRLDTPSHLYSLPFFPNWSDDPdFPTGDEILAY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 79 FTRYEQRYDL--PVRRPVRVQEVT--HDGERFHVTTDD-EHLTARTVVAATGTWSSPFVPYYPGA--FSGRQWHSAVYPG 151
Cdd:COG2072 86 LEAYADKFGLrrPIRFGTEVTSARwdEADGRWTVTTDDgETLTARFVVVATGPLSRPKIPDIPGLedFAGEQLHSADWRN 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 152 PDPFQGESVAVVGAGNSGSQIAAELVLSGVDTTWFTAKPPRWMP----DDVDGR--------VLFQRNRARLNAMMR--- 216
Cdd:COG2072 166 PVDLAGKRVLVVGTGASAVQIAPELARVAAHVTVFQRTPPWVLPrpnyDPERGRpanylgleAPPALNRRDARAWLRrll 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 217 ---------GEPDPG---------ADTNL------GDIVVV-PPVKQARDEGLLEASPmfsslDEVEADHLIWCTGFRPA 271
Cdd:COG2072 246 raqvkdpelGLLTPDyppgckrplLSTDYyealrrGNVELVtGGIERITEDGVVFADG-----TEHEVDVIVWATGFRAD 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 552764235 272 LGPFRELL----DGRTPTVT----------GLFLVGYGTWTGPGSATI 305
Cdd:COG2072 321 LPWLAPLDvrgrDGRSGPRAylgvvvpgfpNLFFLGPNSPSGHSSLTL 368
|
|
| Pyr_redox_3 |
pfam13738 |
Pyridine nucleotide-disulphide oxidoreductase; |
12-293 |
3.23e-27 |
|
Pyridine nucleotide-disulphide oxidoreductase;
Pssm-ID: 404603 [Multi-domain] Cd Length: 296 Bit Score: 108.08 E-value: 3.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 12 AGLATGYYLRKKRL-DFQILDAEpSPGAAWRHaWP-SLTLFSNSASSN---LPGLPMPHHDGFPPASHV---------ID 77
Cdd:pfam13738 2 AGIGCAIALKKAGLeDYLILEKG-NIGNSFYR-YPtHMTFFSPSFTSNgfgIPDLNAISPGTSPAFTFNrehpsgneyAE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 78 YFTRYEQRYDLPVRRPVRVQEVTHDGERFHVTTDDEHLTARTVVAATGTWSspfVPYYPGaFSGRQWHSAVYPGPDPFQG 157
Cdd:pfam13738 80 YLRRVADHFELPINLFEEVTSVKKEDDGFVVTTSKGTYQARYVIIATGEFD---FPNKLG-VPELPKHYSYVKDFHPYAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 158 ESVAVVGAGNSGSQIAAELVLSGVDTTWFTAKPPrWMPDDVDGRV-LFQRNRARLNAmmrgepdpGADTNLGDIVVVPPV 236
Cdd:pfam13738 156 QKVVVIGGYNSAVDAALELVRKGARVTVLYRGSE-WEDRDSDPSYsLSPDTLNRLEE--------LVKNGKIKAHFNAEV 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 552764235 237 KQARDEGlLEASPMFSSLDEVEADH-LIWCTGFRPALGPFRELL-----DGRtPTVT---------GLFLVG 293
Cdd:pfam13738 227 KEITEVD-VSYKVHTEDGRKVTSNDdPILATGYHPDLSFLKKGLfeldeDGR-PVLTeetestnvpGLFLAG 296
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
3-304 |
1.00e-17 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 81.98 E-value: 1.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKRLDFQILDAEpsPGAAWRHAWPSLTLFsnSASSNLPGLPMPHHDGFPPASHVIDYFTRY 82
Cdd:pfam07992 2 DVVVIGGGPAGLAAALTLAQLGGKVTLIEDE--GTCPYGGCVLSKALL--GAAEAPEIASLWADLYKRKEEVVKKLNNGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 83 EQRYDlpvrrpVRVQEVTHDGERFH----VTTDDEHLTARTVVAATGtwSSPFVPYYPGA-----FSGRQWHSAVYPGPD 153
Cdd:pfam07992 78 EVLLG------TEVVSIDPGAKKVVleelVDGDGETITYDRLVIATG--ARPRLPPIPGVelnvgFLVRTLDSAEALRLK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 154 PfQGESVAVVGAGNSGSQIAAELVLSGVDTTWFTAKpprwmpdDVDGRVLFQRNRARLNAMMRgepdpgadtNLG-DIVV 232
Cdd:pfam07992 150 L-LPKRVVVVGGGYIGVELAAALAKLGKEVTLIEAL-------DRLLRAFDEEISAALEKALE---------KNGvEVRL 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 233 VPPVKQARDEGlLEASPMFSSLDEVEADHLIWCTGFRPALGPFRELL-------------DGRTpTVTGLFLVGYGTWTG 299
Cdd:pfam07992 213 GTSVKEIIGDG-DGVEVILKDGTEIDADLVVVAIGRRPNTELLEAAGlelderggivvdeYLRT-SVPGIYAAGDCRVGG 290
|
....*
gi 552764235 300 PGSAT 304
Cdd:pfam07992 291 PELAQ 295
|
|
| TrxB |
COG0492 |
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; |
3-320 |
4.53e-16 |
|
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 77.08 E-value: 4.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKRLDFQILDAePSPG---AAWRHAWpsltlfsnsassNLPGLPMpHHDGFppashviDYF 79
Cdd:COG0492 2 DVVIIGAGPAGLTAAIYAARAGLKTLVIEG-GEPGgqlATTKEIE------------NYPGFPE-GISGP-------ELA 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 80 TR-YEQ--RYDLPVRRpVRVQEVTHDGERFHVTTDD-EHLTARTVVAATGtwSSPFVPYYPG--AFSGRQWHSAVYPGPD 153
Cdd:COG0492 61 ERlREQaeRFGAEILL-EEVTSVDKDDGPFRVTTDDgTEYEAKAVIIATG--AGPRKLGLPGeeEFEGRGVSYCATCDGF 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 154 PFQGESVAVVGAGNSGSQIAAELVLSGVDTTWFTAKP-PRWMPDDVDgrvlfqrnRARlnammrgepdpgadtNLGDIVV 232
Cdd:COG0492 138 FFRGKDVVVVGGGDSALEEALYLTKFASKVTLIHRRDeLRASKILVE--------RLR---------------ANPKIEV 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 233 VPP--VKQARDEGLLEASpMFSSLD-----EVEADHLIWCTGFRPALGPFREL---LDGRtptvtGLFLVGYGTWTgpgs 302
Cdd:COG0492 195 LWNteVTEIEGDGRVEGV-TLKNVKtgeekELEVDGVFVAIGLKPNTELLKGLgleLDED-----GYIVVDEDMET---- 264
|
330
....*....|....*...
gi 552764235 303 aTITGVspFAkqtAGDIA 320
Cdd:COG0492 265 -SVPGV--FA---AGDVR 276
|
|
| FMO-like |
pfam00743 |
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone ... |
6-176 |
1.78e-11 |
|
Flavin-binding monooxygenase-like; This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.
Pssm-ID: 395602 [Multi-domain] Cd Length: 531 Bit Score: 64.80 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 6 VIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWR--------HAWPSLTLFSNSAS--SNLPGLPMP-HHDGFPPASH 74
Cdd:pfam00743 6 VIGAGVSGLASIKCCLEEGLEPTCFERSDDIGGLWRftenveegRASIYKSVITNTSKemSCFSDFPFPeDYPNFMHNSK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 75 VIDYFTRYEQRYDL--PVRRPVRVQEVTHDGE-----RFHVTTDDEHLTARTVVAA----TGTWSSPFVPY--YPG--AF 139
Cdd:pfam00743 86 FLEYFRMFAKEFDLlkYIQFKTTVCSVKKRPDfstsgQWEVVTEHEGKQESAVFDAvmvcTGHHTNPHLPLesFPGieKF 165
|
170 180 190
....*....|....*....|....*....|....*..
gi 552764235 140 SGRQWHSAVYPGPDPFQGESVAVVGAGNSGSQIAAEL 176
Cdd:pfam00743 166 KGQYFHSRDYKHPEGFTGKRVLVIGIGNSGGDIAVEL 202
|
|
| Lys_Orn_oxgnase |
pfam13434 |
L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold ... |
95-190 |
7.95e-08 |
|
L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase; This is a family of Rossmann fold oxidoreductases that catalyze NADPH-dependent hydroxylation and are involved in siderophore biosynthesis. This family includes L-ornithine 5-monooxygenase, which catalyzes the hydroxylation of L-ornithine at the N5 position, and L-lysine 6-monooxygenase, which catalyzes the hydroxylation of lysine at the N6 position (EC:1.14.13.59).
Pssm-ID: 433204 [Multi-domain] Cd Length: 338 Bit Score: 52.97 E-value: 7.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 95 RVQEVTHDGER----FHVTTDDEHLT-----ARTVVAATGTwsspfVPYYPGAF--SGRQWHSAVY--PGPDPFQGESVA 161
Cdd:pfam13434 117 EVESVEPDAERgeplLRVRVRDADGEettflARNLVLGTGG-----EPYIPECArgGERVFHSSEYleRIDRLAAKKRIA 191
|
90 100 110
....*....|....*....|....*....|..
gi 552764235 162 VVGAGNSGSQIAAELvLSGVDT---TWFTAKP 190
Cdd:pfam13434 192 VVGSGQSAAEIFRDL-LRRGPAyelTWVTRSP 222
|
|
| PLN02172 |
PLN02172 |
flavin-containing monooxygenase FMO GS-OX |
6-176 |
1.08e-07 |
|
flavin-containing monooxygenase FMO GS-OX
Pssm-ID: 215116 [Multi-domain] Cd Length: 461 Bit Score: 52.94 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 6 VIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRHAWPS----LTLFSN----------SASSNLPG----------L 61
Cdd:PLN02172 15 VIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSesdpLSLDPTrsivhssvyeSLRTNLPRecmgyrdfpfV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 62 PMPHHDG-----FPPASHVIDYFTRYEQRYDL--------------PVRRPVRVQEVTHDGerfhvTTDDEHLTArtVVA 122
Cdd:PLN02172 95 PRFDDESrdsrrYPSHREVLAYLQDFAREFKIeemvrfetevvrvePVDGKWRVQSKNSGG-----FSKDEIFDA--VVV 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 552764235 123 ATGTWSSPFVPYYPG--AFSGRQWHSAVYPGPDPFQGESVAVVGAGNSGSQIAAEL 176
Cdd:PLN02172 168 CNGHYTEPNVAHIPGikSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDI 223
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
1-128 |
1.36e-06 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 49.17 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 1 MLDCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSPG-------------------------AAWRHAWPSLTLFSNSAS 55
Cdd:COG0654 3 RTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRpdgrgialsprslellrrlglwdrlLARGAPIRGIRVRDGSDG 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552764235 56 SNLPGLPMpHHDGFPPA-----SHVIDYFTRYEQRYDLPVRRPVRVQEVTHDGERFHVTTDD-EHLTARTVVAATGTWS 128
Cdd:COG0654 83 RVLARFDA-AETGLPAGlvvprADLERALLEAARALGVELRFGTEVTGLEQDADGVTVTLADgRTLRADLVVGADGARS 160
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
3-305 |
2.79e-05 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 45.28 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKRLDFQILDA-EPSPGAAWR---------------------------------------- 41
Cdd:COG0665 4 DVVVIGGGIAGLSTAYHLARRGLDVTVLERgRPGSGASGRnagqlrpglaaladralvrlarealdlwrelaaelgidcd 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 42 -HAWPSLTLFSNSASSN---------------------------LPGLPMPHHDG---FPPASHV-----IDYFTRYEQR 85
Cdd:COG0665 84 fRRTGVLYLARTEAELAalraeaealralglpvelldaaelrerEPGLGSPDYAGglyDPDDGHVdpaklVRALARAARA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 86 YDLPVRRPVRVQEVTHDGERFH-VTTDDEHLTARTVVAATGTWSSPFVPYYPGAF---SGRQWHSAVYPGPDPfqgesva 161
Cdd:COG0665 164 AGVRIREGTPVTGLEREGGRVTgVRTERGTVRADAVVLAAGAWSARLLPMLGLRLplrPVRGYVLVTEPLPDL------- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 162 vvgagnsgsqiaaeLVLSGVDTTWFTAKPPRwmpddvDGRVLFqrnrarlnammRGEPDPGADTnlgdivvvPPVKQARD 241
Cdd:COG0665 237 --------------PLRPVLDDTGVYLRPTA------DGRLLV-----------GGTAEPAGFD--------RAPTPERL 277
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 552764235 242 EGLLE-ASPMFSSLDEVEADHlIWCtGFRPALGPFRELLdGRTPTVTGLFLV-GYGTW---TGPGSATI 305
Cdd:COG0665 278 EALLRrLRRLFPALADAEIVR-AWA-GLRPMTPDGLPII-GRLPGAPGLYVAtGHGGHgvtLAPAAGRL 343
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
1-37 |
5.84e-05 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 44.44 E-value: 5.84e-05
10 20 30
....*....|....*....|....*....|....*..
gi 552764235 1 MLDCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSPG 37
Cdd:COG1232 1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVG 37
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
9-125 |
7.04e-05 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 43.80 E-value: 7.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 9 GGQAGLATGYYLRKKRLDFQILDAEPSP------GAAWRHAWPSLTLFSNSA--SSNLPG----LPMPHHDGFPPA---S 73
Cdd:COG0644 1 AGPAGSAAARRLARAGLSVLLLEKGSFPgdkicgGGLLPRALEELEPLGLDEplERPVRGarfySPGGKSVELPPGrggG 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 552764235 74 HVID------YFTRYEQRYDLPVRRPVRVQEVTHDGERFHVTTDDEH-LTARTVVAATG 125
Cdd:COG0644 81 YVVDrarfdrWLAEQAEEAGAEVRTGTRVTDVLRDDGRVVVRTGDGEeIRADYVVDADG 139
|
|
| PRK11883 |
PRK11883 |
protoporphyrinogen oxidase; Reviewed |
4-37 |
9.16e-05 |
|
protoporphyrinogen oxidase; Reviewed
Pssm-ID: 237009 [Multi-domain] Cd Length: 451 Bit Score: 43.68 E-value: 9.16e-05
10 20 30
....*....|....*....|....*....|....*.
gi 552764235 4 CIVIGGGQAGLATGYYLRKKRLDFQI--LDAEPSPG 37
Cdd:PRK11883 3 VAIIGGGITGLSAAYRLHKKGPDADItlLEASDRLG 38
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
6-41 |
1.08e-04 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 39.82 E-value: 1.08e-04
10 20 30
....*....|....*....|....*....|....*.
gi 552764235 6 VIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWR 41
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNAY 36
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
6-49 |
1.60e-04 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 43.18 E-value: 1.60e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 552764235 6 VIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRHAWPSLTL 49
Cdd:PRK12814 198 IIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRL 241
|
|
| FadH2 |
COG0446 |
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ... |
94-270 |
2.60e-04 |
|
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];
Pssm-ID: 440215 [Multi-domain] Cd Length: 322 Bit Score: 42.11 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 94 VRVQ-EVTH-DGERFHVTTDD-EHLTARTVVAATGtwSSPFVPYYPGA-----FSGRQWHSAVYPGP--DPFQGESVAVV 163
Cdd:COG0446 53 VRTGtEVTAiDPEAKTVTLRDgETLSYDKLVLATG--ARPRPPPIPGLdlpgvFTLRTLDDADALREalKEFKGKRAVVI 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 164 GAGNSGSQIAAELVLSGVDTTWFTAKP---PRWMPDDVDgrvlfqrnraRLNAMMRgepDPGADTNLGDivvvpPVKQAR 240
Cdd:COG0446 131 GGGPIGLELAEALRKRGLKVTLVERAPrllGVLDPEMAA----------LLEEELR---EHGVELRLGE-----TVVAID 192
|
170 180 190
....*....|....*....|....*....|
gi 552764235 241 DEGLLEASpmFSSLDEVEADHLIWCTGFRP 270
Cdd:COG0446 193 GDDKVAVT--LTDGEEIPADLVVVAPGVRP 220
|
|
| Lpd |
COG1249 |
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ... |
110-272 |
3.34e-04 |
|
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation
Pssm-ID: 440861 [Multi-domain] Cd Length: 456 Bit Score: 42.00 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 110 TDDEHLTARTVVAATGtwSSPFVPYYPGAFSGRQWHSavypgpD-----PFQGESVAVVGAGNsgsqIAAEL--VLS--G 180
Cdd:COG1249 124 TGGETLTADHIVIATG--SRPRVPPIPGLDEVRVLTS------DealelEELPKSLVVIGGGY----IGLEFaqIFArlG 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 181 VDTTWFTAKP---PRwMPDDVdGRVLFQRNRA-----RLNAMMRG-EPDpgadtnlGDIVVVppvkQARDEGLLEAspmf 251
Cdd:COG1249 192 SEVTLVERGDrllPG-EDPEI-SEALEKALEKegidiLTGAKVTSvEKT-------GDGVTV----TLEDGGGEEA---- 254
|
170 180
....*....|....*....|.
gi 552764235 252 ssldeVEADHLIWCTGFRPAL 272
Cdd:COG1249 255 -----VEADKVLVATGRRPNT 270
|
|
| NAD_binding_9 |
pfam13454 |
FAD-NAD(P)-binding; |
6-125 |
5.41e-04 |
|
FAD-NAD(P)-binding;
Pssm-ID: 433222 [Multi-domain] Cd Length: 155 Bit Score: 39.95 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764235 6 VIGGGQAGLATGYYL--RKKRLDFQILDAEPSP---GAAWRHAWPSLTLfSNSASSNLPGLP------------------ 62
Cdd:pfam13454 2 IVGGGPSGLALLERLlaRAPKRPLEITLFDPSPpgaGGVYRTDQSPEHL-LNVPASRMSLFPddpphflewlrargalde 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 552764235 63 MPHHDG--FPPASHVIDY----FTRYEQRYDLPVRRPVRVQEVT----HDGERFHVTTDDEHLTARTVVAATG 125
Cdd:pfam13454 81 APGLDPddFPPRALYGRYlrdrFEEALARAPAGVTVRVHRARVTdlrpRGDGYRVLLADGRTLAADAVVLATG 153
|
|
| solA |
PRK11259 |
N-methyl-L-tryptophan oxidase; |
95-155 |
8.42e-04 |
|
N-methyl-L-tryptophan oxidase;
Pssm-ID: 236887 [Multi-domain] Cd Length: 376 Bit Score: 40.59 E-value: 8.42e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 552764235 95 RVQEVTHDGERFHVTTDDEHLTARTVVAATGTWSSPFVPyypgAFSG-----RQ---WHSAV--YPGPDPF 155
Cdd:PRK11259 171 PVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWVKDLLP----PLELpltpvRQvlaWFQADgrYSEPNRF 237
|
|
| carotene-cycl |
TIGR01790 |
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases ... |
3-44 |
1.12e-03 |
|
lycopene cyclase family protein; This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Pssm-ID: 130850 [Multi-domain] Cd Length: 388 Bit Score: 40.49 E-value: 1.12e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 552764235 3 DCIVIGGGQAGLATGyyLRKKRLDFQILDAEPSPGAAWRHAW 44
Cdd:TIGR01790 1 DLAVIGGGPAGLAIA--LELARPGLRVQLIEPHPPIPGNHTY 40
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
145-190 |
2.59e-03 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 39.39 E-value: 2.59e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 552764235 145 HSAVYPGPDPFQGESVAVVGAGNSGSQIAAELVLSGVDTTWFTAKP 190
Cdd:PRK11749 128 TGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173
|
|
| lycopene_cycl |
TIGR01789 |
lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the ... |
3-44 |
4.57e-03 |
|
lycopene cyclase; This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Pssm-ID: 130849 Cd Length: 370 Bit Score: 38.31 E-value: 4.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRHAW 44
Cdd:TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW 42
|
|
| Thi4 |
pfam01946 |
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme. |
3-51 |
4.91e-03 |
|
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
Pssm-ID: 460393 Cd Length: 232 Bit Score: 37.84 E-value: 4.91e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKR-LDFQILDAEPSPGAAwrhAWPSLTLFS 51
Cdd:pfam01946 19 DVVIVGAGSSGLTAAYYLAKNRgLKVAIIERSVSPGGG---AWLGGQLFS 65
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
1-38 |
7.04e-03 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 37.82 E-value: 7.04e-03
10 20 30
....*....|....*....|....*....|....*....
gi 552764235 1 MLDCIVIGGGQAGLATGYYLRKKR-LDFQILDAEPSPGA 38
Cdd:COG0579 4 MYDVVIIGAGIVGLALARELSRYEdLKVLVLEKEDDVAQ 42
|
|
| PRK13984 |
PRK13984 |
putative oxidoreductase; Provisional |
6-49 |
7.58e-03 |
|
putative oxidoreductase; Provisional
Pssm-ID: 172486 [Multi-domain] Cd Length: 604 Bit Score: 37.82 E-value: 7.58e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 552764235 6 VIGGGQAGLATGYYLRKKRLDFQILDAEPSPGAAWRHAWPSLTL 49
Cdd:PRK13984 288 IVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRL 331
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
3-43 |
9.89e-03 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 37.38 E-value: 9.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 552764235 3 DCIVIGGGQAGLATGYYLRKKRLDFQILDAEPSP--GAAWRHA 43
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPgsGASGRNA 43
|
|
| |
