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Conserved domains on  [gi|552764292|ref|WP_023016425|]
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MULTISPECIES: hypothetical protein [Corynebacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6518 super family cl45501
Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. ...
 60-150 8.30e-05

Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 205 and 220 amino acids in length.


The actual alignment was detected with superfamily member pfam20128:

Pssm-ID: 466296  Cd Length: 201  Bit Score: 41.86  E-value: 8.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764292   60 SGMVWALFAYLMGKACSHRWTTAFFAGAGILLLMLAVHYGLLSAFGIYDWQTAFLAngaWFLFALIAGPLFGAAGAFSHR 139
Cdd:pfam20128  42 SAAGWTLVAFLLGALARGRARLAAVAGALALVGLVVGYYAAAELRGYPYSPTFPLL---WLVVGVVAGPVFGAAGAWLRR 118

                          90
                  ....*....|.
gi 552764292  140 LGWLDYVAVLG 150
Cdd:pfam20128 119 RRPRRAAAGAA 129
 
Name Accession Description Interval E-value
DUF6518 pfam20128
Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. ...
 60-150 8.30e-05

Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 205 and 220 amino acids in length.


Pssm-ID: 466296  Cd Length: 201  Bit Score: 41.86  E-value: 8.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764292   60 SGMVWALFAYLMGKACSHRWTTAFFAGAGILLLMLAVHYGLLSAFGIYDWQTAFLAngaWFLFALIAGPLFGAAGAFSHR 139
Cdd:pfam20128  42 SAAGWTLVAFLLGALARGRARLAAVAGALALVGLVVGYYAAAELRGYPYSPTFPLL---WLVVGVVAGPVFGAAGAWLRR 118

                          90
                  ....*....|.
gi 552764292  140 LGWLDYVAVLG 150
Cdd:pfam20128 119 RRPRRAAAGAA 129
 
Name Accession Description Interval E-value
DUF6518 pfam20128
Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. ...
 60-150 8.30e-05

Family of unknown function (DUF6518); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 205 and 220 amino acids in length.


Pssm-ID: 466296  Cd Length: 201  Bit Score: 41.86  E-value: 8.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764292   60 SGMVWALFAYLMGKACSHRWTTAFFAGAGILLLMLAVHYGLLSAFGIYDWQTAFLAngaWFLFALIAGPLFGAAGAFSHR 139
Cdd:pfam20128  42 SAAGWTLVAFLLGALARGRARLAAVAGALALVGLVVGYYAAAELRGYPYSPTFPLL---WLVVGVVAGPVFGAAGAWLRR 118

                          90
                  ....*....|.
gi 552764292  140 LGWLDYVAVLG 150
Cdd:pfam20128 119 RRPRRAAAGAA 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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