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Conserved domains on  [gi|552764347|ref|WP_023016480|]
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MULTISPECIES: VOC family protein [Corynebacterium]

Protein Classification

VOC family protein( domain architecture ID 16058428)

vicinal oxygen chelate (VOC) family protein uses a metal center to coordinate a substrate, intermediate, or transition state through vicinal oxygen atoms

CATH:  3.10.180.10
Gene Ontology:  GO:0046872|GO:0003824
PubMed:  21820381|11076500

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyoxalase_6 pfam18029
Glyoxalase-like domain; This entry comprises a diverse set of domains related to the ...
10-111 8.02e-37

Glyoxalase-like domain; This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.


:

Pssm-ID: 436220  Cd Length: 110  Bit Score: 120.95  E-value: 8.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347   10 QITFDCHDPSKLAKFWSAATGCEIAADY-------GDFVMVDSTPALGFQRVEEPTPGKNRMHVDVGGAERETLIERLKD 82
Cdd:pfam18029   1 AVVLDCADPAALAAFWSAALGWEVVPDDtalpdpdGGGPIGGGGPRLLFQRVPEPKPGKNRVHLDLAVDDLEAAVARLVA 80
                          90       100
                  ....*....|....*....|....*....
gi 552764347   83 LGATELTTHEAPGLVWTVMQDPEGNEFCV 111
Cdd:pfam18029  81 LGATVLDDGDDPDGGRWVLADPEGNEFCL 109
 
Name Accession Description Interval E-value
Glyoxalase_6 pfam18029
Glyoxalase-like domain; This entry comprises a diverse set of domains related to the ...
10-111 8.02e-37

Glyoxalase-like domain; This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.


Pssm-ID: 436220  Cd Length: 110  Bit Score: 120.95  E-value: 8.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347   10 QITFDCHDPSKLAKFWSAATGCEIAADY-------GDFVMVDSTPALGFQRVEEPTPGKNRMHVDVGGAERETLIERLKD 82
Cdd:pfam18029   1 AVVLDCADPAALAAFWSAALGWEVVPDDtalpdpdGGGPIGGGGPRLLFQRVPEPKPGKNRVHLDLAVDDLEAAVARLVA 80
                          90       100
                  ....*....|....*....|....*....
gi 552764347   83 LGATELTTHEAPGLVWTVMQDPEGNEFCV 111
Cdd:pfam18029  81 LGATVLDDGDDPDGGRWVLADPEGNEFCL 109
VOC COG3324
Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function ...
7-116 1.55e-12

Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function prediction only];


Pssm-ID: 442553 [Multi-domain]  Cd Length: 119  Bit Score: 59.26  E-value: 1.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347   7 TIRQITFDCHDPSKLAKFWSAATGCEIAADYG---DFVMVDSTP--ALGFQRVEEpTPGKNRMHVDVGGAERETLIERLK 81
Cdd:COG3324    4 TIVWVELPVDDLERAKAFYEEVFGWTFEDDAGpggDYAEFDTDGgqVGGLMPGAE-EPGGPGWLLYFAVDDLDAAVARVE 82
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 552764347  82 DLGATELT--THEAPGLVWTVMQDPEGNEFCVGSPKA 116
Cdd:COG3324   83 AAGGTVLRppTDIPPWGRFAVFRDPEGNRFGLWQPAA 119
VOC cd06587
vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed ...
11-111 8.38e-05

vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.


Pssm-ID: 319898 [Multi-domain]  Cd Length: 112  Bit Score: 39.05  E-value: 8.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347  11 ITFDCHDPSKLAKFWSAATGCEIA--ADYGDFVMVDSTPALGFQRVEEPTP------GKNRMHVDVGGAERetLIERLKD 82
Cdd:cd06587    2 VALRVPDLDASVAFYEEVLGFEVVsrNEGGGFAFLRLGPGLRLALLEGPEPerpgggGLFHLAFEVDDVDE--VDERLRE 79
                         90       100       110
                 ....*....|....*....|....*....|...
gi 552764347  83 LGATELTTHEAPGLVWTV----MQDPEGNEFCV 111
Cdd:cd06587   80 AGAEGELVAPPVDDPWGGrsfyFRDPDGNLIEF 112
 
Name Accession Description Interval E-value
Glyoxalase_6 pfam18029
Glyoxalase-like domain; This entry comprises a diverse set of domains related to the ...
10-111 8.02e-37

Glyoxalase-like domain; This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.


Pssm-ID: 436220  Cd Length: 110  Bit Score: 120.95  E-value: 8.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347   10 QITFDCHDPSKLAKFWSAATGCEIAADY-------GDFVMVDSTPALGFQRVEEPTPGKNRMHVDVGGAERETLIERLKD 82
Cdd:pfam18029   1 AVVLDCADPAALAAFWSAALGWEVVPDDtalpdpdGGGPIGGGGPRLLFQRVPEPKPGKNRVHLDLAVDDLEAAVARLVA 80
                          90       100
                  ....*....|....*....|....*....
gi 552764347   83 LGATELTTHEAPGLVWTVMQDPEGNEFCV 111
Cdd:pfam18029  81 LGATVLDDGDDPDGGRWVLADPEGNEFCL 109
VOC COG3324
Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function ...
7-116 1.55e-12

Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function prediction only];


Pssm-ID: 442553 [Multi-domain]  Cd Length: 119  Bit Score: 59.26  E-value: 1.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347   7 TIRQITFDCHDPSKLAKFWSAATGCEIAADYG---DFVMVDSTP--ALGFQRVEEpTPGKNRMHVDVGGAERETLIERLK 81
Cdd:COG3324    4 TIVWVELPVDDLERAKAFYEEVFGWTFEDDAGpggDYAEFDTDGgqVGGLMPGAE-EPGGPGWLLYFAVDDLDAAVARVE 82
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 552764347  82 DLGATELT--THEAPGLVWTVMQDPEGNEFCVGSPKA 116
Cdd:COG3324   83 AAGGTVLRppTDIPPWGRFAVFRDPEGNRFGLWQPAA 119
VOC cd06587
vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed ...
11-111 8.38e-05

vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.


Pssm-ID: 319898 [Multi-domain]  Cd Length: 112  Bit Score: 39.05  E-value: 8.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 552764347  11 ITFDCHDPSKLAKFWSAATGCEIA--ADYGDFVMVDSTPALGFQRVEEPTP------GKNRMHVDVGGAERetLIERLKD 82
Cdd:cd06587    2 VALRVPDLDASVAFYEEVLGFEVVsrNEGGGFAFLRLGPGLRLALLEGPEPerpgggGLFHLAFEVDDVDE--VDERLRE 79
                         90       100       110
                 ....*....|....*....|....*....|...
gi 552764347  83 LGATELTTHEAPGLVWTV----MQDPEGNEFCV 111
Cdd:cd06587   80 AGAEGELVAPPVDDPWGGrsfyFRDPDGNLIEF 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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