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Conserved domains on  [gi|555259148|ref|WP_023241506|]
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YbjP/YqhG family protein [Salmonella enterica]

Protein Classification

YbjP/YqhG family protein( domain architecture ID 10583805)

YbjP/YqhG family protein is a DUF3828 domain-containing protein; similar to Escherichia coli protein YqhG which regulates transcription of the adjacent Escherichia coli genes yqhD and dkgA that are involved in furfural tolerance

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 22-142 2.35e-48

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


:

Pssm-ID: 403935  Cd Length: 122  Bit Score: 152.56  E-value: 2.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555259148   22 DSTQAVKQFYTSWMTTFTNdvnTPDDTTALMQRYVAKEVIHRL--ALIQSLYEQEIVGADYFMYSQDYAPEWIPQLRVGK 99
Cdd:pfam12883   1 GPEQTVQQFYTQYMLTFTE---TPKQDAAAMRPYISKELLQQLgsAFIDQLPEQEILDYDPFSYAQDYDPDWIPSVKVGP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 555259148  100 AHPFLGGEKVDVLLAT-ESTPIHLEVYTRWEEGRWKIYRVRDAD 142
Cdd:pfam12883  78 AKADLGGAVVDVWLGKqDGEPIQLTVYLKRENGKWKIDDVRDLT 121
 
Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 22-142 2.35e-48

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


Pssm-ID: 403935  Cd Length: 122  Bit Score: 152.56  E-value: 2.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555259148   22 DSTQAVKQFYTSWMTTFTNdvnTPDDTTALMQRYVAKEVIHRL--ALIQSLYEQEIVGADYFMYSQDYAPEWIPQLRVGK 99
Cdd:pfam12883   1 GPEQTVQQFYTQYMLTFTE---TPKQDAAAMRPYISKELLQQLgsAFIDQLPEQEILDYDPFSYAQDYDPDWIPSVKVGP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 555259148  100 AHPFLGGEKVDVLLAT-ESTPIHLEVYTRWEEGRWKIYRVRDAD 142
Cdd:pfam12883  78 AKADLGGAVVDVWLGKqDGEPIQLTVYLKRENGKWKIDDVRDLT 121
 
Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 22-142 2.35e-48

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


Pssm-ID: 403935  Cd Length: 122  Bit Score: 152.56  E-value: 2.35e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555259148   22 DSTQAVKQFYTSWMTTFTNdvnTPDDTTALMQRYVAKEVIHRL--ALIQSLYEQEIVGADYFMYSQDYAPEWIPQLRVGK 99
Cdd:pfam12883   1 GPEQTVQQFYTQYMLTFTE---TPKQDAAAMRPYISKELLQQLgsAFIDQLPEQEILDYDPFSYAQDYDPDWIPSVKVGP 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 555259148  100 AHPFLGGEKVDVLLAT-ESTPIHLEVYTRWEEGRWKIYRVRDAD 142
Cdd:pfam12883  78 AKADLGGAVVDVWLGKqDGEPIQLTVYLKRENGKWKIDDVRDLT 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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