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Conserved domains on  [gi|555260174|ref|WP_023242465|]
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phage tail sheath family protein [Salmonella enterica]

Protein Classification

phage tail sheath family protein( domain architecture ID 10007475)

phage tail sheath family protein may be encoded in a region together with other putative prophage genes; it may be part of a type 6 secretion system (T6SS) that functions as a contractile injection system utilizing a phage tail-like structure, and is an intracellular system attached to the cytoplasmic membrane, or part of an extracellular contractile injection system (eCIS), such as found in insecticidal antifeeding prophages (Afps)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_sheath_1 super family cl01389
Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a ...
 1-471 1.43e-146

Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.


The actual alignment was detected with superfamily member PHA02560:

Pssm-ID: 470182 [Multi-domain]  Cd Length: 388  Bit Score: 424.12  E-value: 1.43e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174   1 MAANYLHGVETIEIETGPRPVKAVKSAVIGLIGTAPCG-----PVNQPTLCLSESDAaqFGPGLANFTIPQALKAIYDHG 75
Cdd:PHA02560   1 MADDYHHGVEVIEINEGTRPIRTVSTAVVGLVCTAPDAdatafPLNTPVLITNVVDA--LGKAGAKGTLPRALDAIADQT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  76 AGTVVVINVLNPAVHKSTipsetvkvddngqiqlkhgavqtinigrstnagnayikgtdytidmltgkitcmgtnlkpgv 155
Cdd:PHA02560  79 KPPTVVVRVAEGADEAAT-------------------------------------------------------------- 96

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 156 qayvnytyadptkvtAADIIGAVNTAGDRTGMKLLQDTWTQFGFYAKILIAPVFCTQnSVAVKLIAQAEALGAITYIDAP 235
Cdd:PHA02560  97 ---------------TSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLDTQ-AVAVALAAMAQKLRAFAYISAP 160

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 236 IGTTFQQVLAGRGpqgainfNTSSDRARLCYPHVKVYDSATDSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITG 315
Cdd:PHA02560 161 GCKTKEEAAAYRE-------NFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTG 233

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 316 VERSLSAMIDDPQSEVNQLNENGITTIFNSygSGLRLWGNRTAawpTVTHMRNFENVRRTGDVINESIRYFSQQYMDMPI 395
Cdd:PHA02560 234 ISRDVDWDLQDPSTDANLLNENGVTTLVRR--NGFRFWGNRTC---SDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPL 308

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 555260174 396 NQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEYLVSL 471
Cdd:PHA02560 309 TPSLVRDIVEGINAKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEF 384
 
Name Accession Description Interval E-value
FI PHA02560
major tail sheath protein; Provisional
 1-471 1.43e-146

major tail sheath protein; Provisional


Pssm-ID: 164955 [Multi-domain]  Cd Length: 388  Bit Score: 424.12  E-value: 1.43e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174   1 MAANYLHGVETIEIETGPRPVKAVKSAVIGLIGTAPCG-----PVNQPTLCLSESDAaqFGPGLANFTIPQALKAIYDHG 75
Cdd:PHA02560   1 MADDYHHGVEVIEINEGTRPIRTVSTAVVGLVCTAPDAdatafPLNTPVLITNVVDA--LGKAGAKGTLPRALDAIADQT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  76 AGTVVVINVLNPAVHKSTipsetvkvddngqiqlkhgavqtinigrstnagnayikgtdytidmltgkitcmgtnlkpgv 155
Cdd:PHA02560  79 KPPTVVVRVAEGADEAAT-------------------------------------------------------------- 96

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 156 qayvnytyadptkvtAADIIGAVNTAGDRTGMKLLQDTWTQFGFYAKILIAPVFCTQnSVAVKLIAQAEALGAITYIDAP 235
Cdd:PHA02560  97 ---------------TSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLDTQ-AVAVALAAMAQKLRAFAYISAP 160

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 236 IGTTFQQVLAGRGpqgainfNTSSDRARLCYPHVKVYDSATDSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITG 315
Cdd:PHA02560 161 GCKTKEEAAAYRE-------NFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTG 233

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 316 VERSLSAMIDDPQSEVNQLNENGITTIFNSygSGLRLWGNRTAawpTVTHMRNFENVRRTGDVINESIRYFSQQYMDMPI 395
Cdd:PHA02560 234 ISRDVDWDLQDPSTDANLLNENGVTTLVRR--NGFRFWGNRTC---SDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPL 308

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 555260174 396 NQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEYLVSL 471
Cdd:PHA02560 309 TPSLVRDIVEGINAKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEF 384
COG3497 COG3497
Phage tail sheath protein FI [Mobilome: prophages, transposons];
186-467 3.80e-114

Phage tail sheath protein FI [Mobilome: prophages, transposons];


Pssm-ID: 442720 [Multi-domain]  Cd Length: 273  Bit Score: 336.86  E-value: 3.80e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 186 GMKLLQDTWTQFGFYAKILIAPVFCTQNSVAVKLIAQAEALGAITYIDAPI-GTTFQQVLAGRGpqgaiNFNTSSDRARL 264
Cdd:COG3497    1 GLEALEAADEKLGVKPRILIAPGLSSLPAVAAALLAHCEKLRAFAILDAPGdGTTLADAIAYRG-----NFGYDSRRAAL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 265 CYPHVKVYDsaTDSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSAMIDDPQSEVNQLNENGITTIFN 344
Cdd:COG3497   76 YYPWVKVFD--TNATVTVPPSGHAAGLYARVDAERGVWKSPSNKEINGVTGLSRPVGFDLQLTDTEANLLNPKGINTIRN 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 345 SYGSGLRLWGNRTAAwptVTHMRNFENVRRTGDVINESIRYFSQQYMDMPINQALIDALTESVNTWGRKLIADGALLGFE 424
Cdd:COG3497  154 FPGRGFRVWGNRTLS---SDPEWRFINVRRTFDFIEESIAEATQWAVDEPNTPALWDDIRESINAFLRTLWRQGALLGGK 230

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 555260174 425 CWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEY 467
Cdd:COG3497  231 VWCDEETNTAEDIAAGKLVIDIGFAPVPPAEFITFRIRQTDGY 273
Phage_sheath_1 pfam04984
Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a ...
 182-358 4.76e-24

Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.


Pssm-ID: 428236  Cd Length: 157  Bit Score: 97.80  E-value: 4.76e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  182 GDRTGMKLLQDTWTQFGFYAKILIAPVF-CTQNSVAVKLIAQA------EALGAITYIDAPIGTTFQQvlagrgpqgaiN 254
Cdd:pfam04984   1 GGVTNPDYLAALAALEGEKFNLIGLPGDdASDNALATEVQAFVkrwreeEGLKGIAVLAGPGTADYEG-----------I 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  255 FNTSSDRARLCYPHVKVYdsatdsevlePLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSamiddpQSEVNQL 334
Cdd:pfam04984  70 INVSSTYAALDGPYITPY----------PAAAWVAGLIAGADVEESDTARPQNLEVTGALDVAPRLT------NEERNLL 133

                         170       180
                  ....*....|....*....|....
gi 555260174  335 NENGITTIFNSYGSGLRLWGNRTA 358
Cdd:pfam04984 134 LEAGVFTLTVDAGDGVRVEGDITT 157
 
Name Accession Description Interval E-value
FI PHA02560
major tail sheath protein; Provisional
 1-471 1.43e-146

major tail sheath protein; Provisional


Pssm-ID: 164955 [Multi-domain]  Cd Length: 388  Bit Score: 424.12  E-value: 1.43e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174   1 MAANYLHGVETIEIETGPRPVKAVKSAVIGLIGTAPCG-----PVNQPTLCLSESDAaqFGPGLANFTIPQALKAIYDHG 75
Cdd:PHA02560   1 MADDYHHGVEVIEINEGTRPIRTVSTAVVGLVCTAPDAdatafPLNTPVLITNVVDA--LGKAGAKGTLPRALDAIADQT 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  76 AGTVVVINVLNPAVHKSTipsetvkvddngqiqlkhgavqtinigrstnagnayikgtdytidmltgkitcmgtnlkpgv 155
Cdd:PHA02560  79 KPPTVVVRVAEGADEAAT-------------------------------------------------------------- 96

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 156 qayvnytyadptkvtAADIIGAVNTAGDRTGMKLLQDTWTQFGFYAKILIAPVFCTQnSVAVKLIAQAEALGAITYIDAP 235
Cdd:PHA02560  97 ---------------TSNIIGGVDADGKYTGIKALLAAQNVLGVKPRILGAPGLDTQ-AVAVALAAMAQKLRAFAYISAP 160

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 236 IGTTFQQVLAGRGpqgainfNTSSDRARLCYPHVKVYDSATDSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITG 315
Cdd:PHA02560 161 GCKTKEEAAAYRE-------NFGQREVMVIWPDFKVYDTATNATATAPASARAAGLRAKIDNDVGWHKSLSNVGVLGVTG 233

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 316 VERSLSAMIDDPQSEVNQLNENGITTIFNSygSGLRLWGNRTAawpTVTHMRNFENVRRTGDVINESIRYFSQQYMDMPI 395
Cdd:PHA02560 234 ISRDVDWDLQDPSTDANLLNENGVTTLVRR--NGFRFWGNRTC---SDDPLFAFENYVRTAQVIADTIAEAHMWAVDKPL 308

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 555260174 396 NQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEYLVSL 471
Cdd:PHA02560 309 TPSLVRDIVEGINAKFRDLVANGYILGGEAWFDPELNTKETLKAGKLYIDYDYTPVPPLEHLTFRQRITDRYLVEF 384
COG3497 COG3497
Phage tail sheath protein FI [Mobilome: prophages, transposons];
186-467 3.80e-114

Phage tail sheath protein FI [Mobilome: prophages, transposons];


Pssm-ID: 442720 [Multi-domain]  Cd Length: 273  Bit Score: 336.86  E-value: 3.80e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 186 GMKLLQDTWTQFGFYAKILIAPVFCTQNSVAVKLIAQAEALGAITYIDAPI-GTTFQQVLAGRGpqgaiNFNTSSDRARL 264
Cdd:COG3497    1 GLEALEAADEKLGVKPRILIAPGLSSLPAVAAALLAHCEKLRAFAILDAPGdGTTLADAIAYRG-----NFGYDSRRAAL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 265 CYPHVKVYDsaTDSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSAMIDDPQSEVNQLNENGITTIFN 344
Cdd:COG3497   76 YYPWVKVFD--TNATVTVPPSGHAAGLYARVDAERGVWKSPSNKEINGVTGLSRPVGFDLQLTDTEANLLNPKGINTIRN 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174 345 SYGSGLRLWGNRTAAwptVTHMRNFENVRRTGDVINESIRYFSQQYMDMPINQALIDALTESVNTWGRKLIADGALLGFE 424
Cdd:COG3497  154 FPGRGFRVWGNRTLS---SDPEWRFINVRRTFDFIEESIAEATQWAVDEPNTPALWDDIRESINAFLRTLWRQGALLGGK 230

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 555260174 425 CWYDPARNEQTELAAGHLLLSYKFTPPPPLERLTFETEITSEY 467
Cdd:COG3497  231 VWCDEETNTAEDIAAGKLVIDIGFAPVPPAEFITFRIRQTDGY 273
Phage_sheath_1 pfam04984
Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a ...
 182-358 4.76e-24

Phage tail sheath protein subtilisin-like domain; This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.


Pssm-ID: 428236  Cd Length: 157  Bit Score: 97.80  E-value: 4.76e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  182 GDRTGMKLLQDTWTQFGFYAKILIAPVF-CTQNSVAVKLIAQA------EALGAITYIDAPIGTTFQQvlagrgpqgaiN 254
Cdd:pfam04984   1 GGVTNPDYLAALAALEGEKFNLIGLPGDdASDNALATEVQAFVkrwreeEGLKGIAVLAGPGTADYEG-----------I 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  255 FNTSSDRARLCYPHVKVYdsatdsevlePLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSamiddpQSEVNQL 334
Cdd:pfam04984  70 INVSSTYAALDGPYITPY----------PAAAWVAGLIAGADVEESDTARPQNLEVTGALDVAPRLT------NEERNLL 133

                         170       180
                  ....*....|....*....|....
gi 555260174  335 NENGITTIFNSYGSGLRLWGNRTA 358
Cdd:pfam04984 134 LEAGVFTLTVDAGDGVRVEGDITT 157
Phage_sheath_1C pfam17482
Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety ...
 362-464 3.05e-17

Phage tail sheath C-terminal domain; This entry represents the C-terminal domain in a variety of phage tail sheath proteins.


Pssm-ID: 435922 [Multi-domain]  Cd Length: 104  Bit Score: 76.92  E-value: 3.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555260174  362 TVTHMRNFENVRRTGDVINESIRYFSQQ--YMDMPINQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQtELAA 439
Cdd:pfam17482   1 DKDPDFLKNRTIRTLDYVNNDIRSTFKWkyPGKKLNDDDGRALVKSELNAYLRELQSLGAIENFDVECDVEVNRQ-GNDK 79

                          90       100
                  ....*....|....*....|....*
gi 555260174  440 GHLLLSYKFTPPPPLERLTFETEIT 464
Cdd:pfam17482  80 DRVVVNIDVTPVNSMEKLYFTVEVT 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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