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Conserved domains on  [gi|556280572|ref|WP_023289223|]
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MULTISPECIES: helix-turn-helix domain-containing protein [Klebsiella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_39 super family cl16606
Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is ...
 143-210 5.03e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.


The actual alignment was detected with superfamily member pfam14090:

Pssm-ID: 433710  Cd Length: 70  Bit Score: 34.64  E-value: 5.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556280572  143 RDRLRQALIAGLPVTALDALFWFGSQRVAADIAQLRRSGMAIVTEEVEVSDNLFNTTRRVPVYRLTSA 210
Cdd:pfam14090   3 CRRILAALRRGGSITTLEAMRQLDITRLAARIHELRGRGFEISTRRVNEATECGRPHRRVARYSLASP 70
 
Name Accession Description Interval E-value
HTH_39 pfam14090
Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is ...
 143-210 5.03e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.


Pssm-ID: 433710  Cd Length: 70  Bit Score: 34.64  E-value: 5.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556280572  143 RDRLRQALIAGLPVTALDALFWFGSQRVAADIAQLRRSGMAIVTEEVEVSDNLFNTTRRVPVYRLTSA 210
Cdd:pfam14090   3 CRRILAALRRGGSITTLEAMRQLDITRLAARIHELRGRGFEISTRRVNEATECGRPHRRVARYSLASP 70
 
Name Accession Description Interval E-value
HTH_39 pfam14090
Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is ...
 143-210 5.03e-03

Helix-turn-helix domain; This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.


Pssm-ID: 433710  Cd Length: 70  Bit Score: 34.64  E-value: 5.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556280572  143 RDRLRQALIAGLPVTALDALFWFGSQRVAADIAQLRRSGMAIVTEEVEVSDNLFNTTRRVPVYRLTSA 210
Cdd:pfam14090   3 CRRILAALRRGGSITTLEAMRQLDITRLAARIHELRGRGFEISTRRVNEATECGRPHRRVARYSLASP 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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