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Conserved domains on  [gi|556282323|ref|WP_023289525|]
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MULTISPECIES: sensor histidine kinase [Klebsiella]

Protein Classification

sensor histidine kinase( domain architecture ID 11485193)

two-component system sensor histidine kinase with a PAS sensor and/or ligand binding domain functions as a protein kinase that phosphorylates a target protein in response to various signals, similar to Escherichia coli sensor histidine kinase DcuS and Bacillus subtilis sensor histidine kinase MalK

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
8-538 0e+00

sensory histidine kinase DcuS; Provisional


:

Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 893.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   8 PRVRQRALPLKLSTAVSLMIGSVIGAVLLLVYALWYMQISNATRDGLKETALAVARTMADMPQVKRGLAAPPQQQIIQPL 87
Cdd:PRK11086   5 PYMKKRKRPMKLSTTVTLMVSAVVFSVLLVVHLLYFSQISRMTRDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTY 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  88 AQAITRRNDLLYAIVTDMHGIRYSHPDSSIIGKPFIGHDIQPTLQGKENVAINHGVLAPALRVFTPVFNDQHQQIGVVVV 167
Cdd:PRK11086  85 AEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGGDELPALKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 168 GISLSKVDEQIANSRWDVLLTILFSALVCAIGTWSLVRGLKRVLLGLEPHEISTQFQQRQAMLHALKEGVVAVDAHGEVN 247
Cdd:PRK11086 165 GISLSEVTEQINESRWSIYWSILFGALVGLIGTVILVRVLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVT 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 248 LINPAAREILF-------SGPDKTLAHTPLLADLQTVLHSGEPMYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKT 320
Cdd:PRK11086 245 LINDEAKRLFNykkgledDPLGTDVESWMPVSRLKEVLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKT 324
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 321 EVSQLLQRLDGMMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFLISKM 400
Cdd:PRK11086 325 EVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGLLHLKSYDQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLLGKI 404
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 401 QRATECGFTLKLAEESLVPDCPNEKQVTVLVTVLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNI 480
Cdd:PRK11086 405 SRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 556282323 481 DAIFNKGFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSKRKRA 538
Cdd:PRK11086 485 DAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGERSNR 542
 
Name Accession Description Interval E-value
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
8-538 0e+00

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 893.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   8 PRVRQRALPLKLSTAVSLMIGSVIGAVLLLVYALWYMQISNATRDGLKETALAVARTMADMPQVKRGLAAPPQQQIIQPL 87
Cdd:PRK11086   5 PYMKKRKRPMKLSTTVTLMVSAVVFSVLLVVHLLYFSQISRMTRDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTY 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  88 AQAITRRNDLLYAIVTDMHGIRYSHPDSSIIGKPFIGHDIQPTLQGKENVAINHGVLAPALRVFTPVFNDQHQQIGVVVV 167
Cdd:PRK11086  85 AEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGGDELPALKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 168 GISLSKVDEQIANSRWDVLLTILFSALVCAIGTWSLVRGLKRVLLGLEPHEISTQFQQRQAMLHALKEGVVAVDAHGEVN 247
Cdd:PRK11086 165 GISLSEVTEQINESRWSIYWSILFGALVGLIGTVILVRVLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVT 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 248 LINPAAREILF-------SGPDKTLAHTPLLADLQTVLHSGEPMYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKT 320
Cdd:PRK11086 245 LINDEAKRLFNykkgledDPLGTDVESWMPVSRLKEVLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKT 324
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 321 EVSQLLQRLDGMMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFLISKM 400
Cdd:PRK11086 325 EVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGLLHLKSYDQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLLGKI 404
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 401 QRATECGFTLKLAEESLVPDCPNEKQVTVLVTVLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNI 480
Cdd:PRK11086 405 SRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 556282323 481 DAIFNKGFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSKRKRA 538
Cdd:PRK11086 485 DAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGERSNR 542
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
183-534 2.63e-107

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 326.04  E-value: 2.63e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 183 WDVLLTILFSALVCAIGTWSLVRGLKRVLLGLEpHEISTQFQQRQAMLHALKEGVVAVDAHGEVNLINPAAREILfsgpD 262
Cdd:COG3290   44 LFVIILLLLLLILLLILLLLLLLLLAALLLKLL-EEIARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLL----G 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 263 KTLAHTPLLADLQTVLHSGEpmYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKTEVSQLLQRLDGMMSYVDALRTT 342
Cdd:COG3290  119 LDAIGRPIDEVLAEVLETGE--RDEEILLNGRVLVVNRVPIRDDGRVVGAVATFRDRTELERLEEELEGVKELAEALRAQ 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 343 SHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFLISKMQRATECGFTLKLAEESLVPDCP 422
Cdd:COG3290  197 RHDFRNHLHTISGLLQLGEYDEALEYIDEISEELQELIDSLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLP 276
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 423 neKQVTVLVTVLGNLIENALDAMSGQAEGE--IGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK-GENRGVGL 499
Cdd:COG3290  277 --LSDTDLVTILGNLLDNAIEAVEKLPEEErrVELSIRDDGDELVIEVEDSGPGIPEELLEKIFERGFSTKlGEGRGLGL 354
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 556282323 500 FLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSK 534
Cdd:COG3290  355 ALVKQIVEKYGGTIEVESEEGEGTVFTVRLPKEGE 389
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 6.23e-32

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 118.54  E-value: 6.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAM--SGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGE-NRGVGLFLANQQL 506
Cdd:cd16915    1 LITIVGNLIDNALDALaaTGAPNKQVEVFLRDEGDDLVIEVRDTGPGIAPELRDKVFERGVSTKGQgERGIGLALVRQSV 80
                         90       100
                 ....*....|....*....|....
gi 556282323 507 RELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16915   81 ERLGGSITVESEPGGGTTFSIRIP 104
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
430-530 1.83e-22

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 92.33  E-value: 1.83e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   430 LVTVLGNLIENALDAMsgQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENR-----GVGLFLANQ 504
Cdd:smart00387   6 LRQVLSNLLDNAIKYT--PEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRkiggtGLGLSIVKK 83
                           90       100
                   ....*....|....*....|....*.
gi 556282323   505 QLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:smart00387  84 LVELHGGEISVESEPGGGTTFTITLP 109
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
430-530 7.31e-20

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 84.73  E-value: 7.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  430 LVTVLGNLIENALDAMSGQAEGEIGLllhYQDGWLSGEVSDDGPGIPENNIDAIFNKGFS---TKGENRGVGLFLANQQL 506
Cdd:pfam02518   6 LRQVLSNLLDNALKHAAKAGEITVTL---SEGGELTLTVEDNGIGIPPEDLPRIFEPFSTadkRGGGGTGLGLSIVRKLV 82
                          90       100
                  ....*....|....*....|....
gi 556282323  507 RELGGTLAVESEPGVFTQFFVHLP 530
Cdd:pfam02518  83 ELLGGTITVESEPGGGTTVTLTLP 106
 
Name Accession Description Interval E-value
PRK11086 PRK11086
sensory histidine kinase DcuS; Provisional
8-538 0e+00

sensory histidine kinase DcuS; Provisional


Pssm-ID: 236839 [Multi-domain]  Cd Length: 542  Bit Score: 893.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   8 PRVRQRALPLKLSTAVSLMIGSVIGAVLLLVYALWYMQISNATRDGLKETALAVARTMADMPQVKRGLAAPPQQQIIQPL 87
Cdd:PRK11086   5 PYMKKRKRPMKLSTTVTLMVSAVVFSVLLVVHLLYFSQISRMTRDGLAEKALAIARTVADSPIVIQGLQGKPDESGIQTY 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  88 AQAITRRNDLLYAIVTDMHGIRYSHPDSSIIGKPFIGHDIQPTLQGKENVAINHGVLAPALRVFTPVFNDQHQQIGVVVV 167
Cdd:PRK11086  85 AEAVRKRNDLLFIVVTDMQGIRYSHPNPQKIGKHFIGGDELPALKGKENVSINRGTLGQALRVFTPVYDENGKQIGVVAV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 168 GISLSKVDEQIANSRWDVLLTILFSALVCAIGTWSLVRGLKRVLLGLEPHEISTQFQQRQAMLHALKEGVVAVDAHGEVN 247
Cdd:PRK11086 165 GISLSEVTEQINESRWSIYWSILFGALVGLIGTVILVRVLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIAVDDRGEVT 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 248 LINPAAREILF-------SGPDKTLAHTPLLADLQTVLHSGEPMYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKT 320
Cdd:PRK11086 245 LINDEAKRLFNykkgledDPLGTDVESWMPVSRLKEVLRTGTPRRDEEININGRLLLTNTVPVRVNGEIIGAIATFRDKT 324
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 321 EVSQLLQRLDGMMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFLISKM 400
Cdd:PRK11086 325 EVRQLAQRLDGMVNYADALRAQSHEFMNKLHVILGLLHLKSYDQLEDYILKTANNYQEEIGSLLGKIKSPVIAGFLLGKI 404
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 401 QRATECGFTLKLAEESLVPDCPNEKQVTVLVTVLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNI 480
Cdd:PRK11086 405 SRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI 484
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 556282323 481 DAIFNKGFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSKRKRA 538
Cdd:PRK11086 485 DAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGERSNR 542
CitA COG3290
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ...
183-534 2.63e-107

Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];


Pssm-ID: 442519 [Multi-domain]  Cd Length: 389  Bit Score: 326.04  E-value: 2.63e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 183 WDVLLTILFSALVCAIGTWSLVRGLKRVLLGLEpHEISTQFQQRQAMLHALKEGVVAVDAHGEVNLINPAAREILfsgpD 262
Cdd:COG3290   44 LFVIILLLLLLILLLILLLLLLLLLAALLLKLL-EEIARLVEEREAVLESIREGVIAVDRDGRITLINDAARRLL----G 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 263 KTLAHTPLLADLQTVLHSGEpmYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKTEVSQLLQRLDGMMSYVDALRTT 342
Cdd:COG3290  119 LDAIGRPIDEVLAEVLETGE--RDEEILLNGRVLVVNRVPIRDDGRVVGAVATFRDRTELERLEEELEGVKELAEALRAQ 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 343 SHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFLISKMQRATECGFTLKLAEESLVPDCP 422
Cdd:COG3290  197 RHDFRNHLHTISGLLQLGEYDEALEYIDEISEELQELIDSLLSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLP 276
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 423 neKQVTVLVTVLGNLIENALDAMSGQAEGE--IGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK-GENRGVGL 499
Cdd:COG3290  277 --LSDTDLVTILGNLLDNAIEAVEKLPEEErrVELSIRDDGDELVIEVEDSGPGIPEELLEKIFERGFSTKlGEGRGLGL 354
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 556282323 500 FLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSK 534
Cdd:COG3290  355 ALVKQIVEKYGGTIEVESEEGEGTVFTVRLPKEGE 389
dpiB PRK15053
sensor histidine kinase DpiB; Provisional
8-530 5.37e-67

sensor histidine kinase DpiB; Provisional


Pssm-ID: 185013 [Multi-domain]  Cd Length: 545  Bit Score: 226.25  E-value: 5.37e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   8 PRVRQRALPLKLSTAVSLMIGSVIGAVLLLVYALWYMQISNATRDglkeTALAVARTMADMPQVKRGLAAPPQQQIIQpL 87
Cdd:PRK15053  11 AFFQRLAFPLRIFLLILVFSIFVIAALAQYFSASFEDYLTLHVRD----MAMNQAKIIASNDSVISAVKTRDYKRLAT-I 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  88 AQAITRRNDLLYAIVTDMHGIRYSHPDSSIIGKPFIGHDIQPTLQGKENVAINHGVLAPALRVFTPVFNDQHQQIGVVVV 167
Cdd:PRK15053  86 ANKLQRDTDFDYVVIGDRHSIRLYHPNPEKIGYPMQFTKPGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVIGVVSI 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 168 GISLSKVDEQiansRWDVLLTiLFSALVCAIG-----TWSLVRGLKRVLLGLEPHEISTQFQQRQAMLHALKEGVVAVDA 242
Cdd:PRK15053 166 GYLVSKIDSW----RLEFLLP-MAGVFVVLLGilmllSWFFAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDP 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 243 HGEVNLINPAAREIL-FSGPDKTLAHTPLL-----ADLQTVlHSGEPMYDRELGCNGLLLISNTVPIRSQEAVVGAICTF 316
Cdd:PRK15053 241 HGYITAINRNARKMLgLSSPGRQWLGKPIAevvrpADFFTE-QIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIISF 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 317 RDKTEVSQLLQRLDGMMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYVLQTAHRYQADIGDIQHRIKSPVVAGFL 396
Cdd:PRK15053 320 RSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLEMVQGESQAQQQLIDSLREAFADRQVAGLL 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 397 ISKMQRATECGFTLKLAEESLVPDCPNEKQVTVLVTVLGNLIENALDAMSGQAEGEIGLLLHYQDgwlSG-----EVSDD 471
Cdd:PRK15053 400 FGKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD---EGddvviEVADQ 476
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556282323 472 GPGIPENNIDAIFNKGFSTKGEN---RGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK15053 477 GCGVPESLRDKIFEQGVSTRADEpgeHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIP 538
HATPase_DpiB-CitA-like cd16915
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 6.23e-32

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.


Pssm-ID: 340392 [Multi-domain]  Cd Length: 104  Bit Score: 118.54  E-value: 6.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAM--SGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGE-NRGVGLFLANQQL 506
Cdd:cd16915    1 LITIVGNLIDNALDALaaTGAPNKQVEVFLRDEGDDLVIEVRDTGPGIAPELRDKVFERGVSTKGQgERGIGLALVRQSV 80
                         90       100
                 ....*....|....*....|....
gi 556282323 507 RELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16915   81 ERLGGSITVESEPGGGTTFSIRIP 104
NtrB COG3852
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
227-530 1.68e-30

Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];


Pssm-ID: 443061 [Multi-domain]  Cd Length: 361  Bit Score: 122.26  E-value: 1.68e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 227 QAMLHALKEGVVAVDAHGEVNLINPAAREIL-FSGPD---KTLAH-----TPLLADLQTVLHSGEPMYDREL------GC 291
Cdd:COG3852   10 RAILDSLPDAVIVLDADGRITYVNPAAERLLgLSAEEllgRPLAElfpedSPLRELLERALAEGQPVTEREVtlrrkdGE 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 292 NGLLLISnTVPIRSQEAVVGAICTFRDKTEVSQL---LQRLDGMMSYVDALRTTSHEFMNKLHVILG---LLNMK-SYGK 364
Cdd:COG3852   90 ERPVDVS-VSPLRDAEGEGGVLLVLRDITERKRLereLRRAEKLAAVGELAAGLAHEIRNPLTGIRGaaqLLERElPDDE 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 365 LEEYvLQTAHRyQADigdiqhRIKSpvvagfLISKM-----QRATECGF---------TLKLAE----------ESLVPD 420
Cdd:COG3852  169 LREY-TQLIIE-EAD------RLNN------LVDRLlsfsrPRPPEREPvnlhevlerVLELLRaeapknirivRDYDPS 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 421 CP----NEKQvtvLVTVLGNLIENALDAMSGQaeGEIGLLLHYQDGWLSG----------EVSDDGPGIPENNIDAIFNK 486
Cdd:COG3852  235 LPevlgDPDQ---LIQVLLNLVRNAAEAMPEG--GTITIRTRVERQVTLGglrprlyvriEVIDNGPGIPEEILDRIFEP 309
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 556282323 487 GFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG3852  310 FFTTKEKGTGLGLAIVQKIVEQHGGTIEVESEPGKGTTFRIYLP 353
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
218-530 4.56e-28

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 116.21  E-value: 4.56e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 218 EISTQFQQRQAMLHALKEGVVAVDAHGEVNLINPAAREILFSGPDKTLAHT-----PLLADLQTVLHSGEPMYDRE--LG 290
Cdd:COG5000   84 ELEERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPleellPELDLAELLREALERGWQEEieLT 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 291 CNGLLLISNTVpirSQEAVVGAICTFRDKTEVSQLlQRldgMMSYVDALRTTSHEFMNKLHVI---LGLLNMKSYGKLEE 367
Cdd:COG5000  164 RDGRRTLLVRA---SPLRDDGYVIVFDDITELLRA-ER---LAAWGELARRIAHEIKNPLTPIqlsAERLRRKLADKLEE 236
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 368 Y------VLQTAHRYQADIGDIQH------RIKSPVV-----------AGFLISKMQRATECGFTLKLAEESLVPDCpNE 424
Cdd:COG5000  237 DredlerALDTIIRQVDRLKRIVDefldfaRLPEPQLepvdlnellreVLALYEPALKEKDIRLELDLDPDLPEVLA-DR 315
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 425 KQvtvLVTVLGNLIENALDAMSGQaeGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQ 504
Cdd:COG5000  316 DQ---LEQVLINLLKNAIEAIEEG--GEIEVSTRREDGRVRIEVSDNGPGIPEEVLERIFEPFFTTKPKGTGLGLAIVKK 390
                        330       340
                 ....*....|....*....|....*.
gi 556282323 505 QLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG5000  391 IVEEHGGTIELESRPGGGTTFTIRLP 416
PRK11360 PRK11360
two-component system sensor histidine kinase AtoS;
162-537 1.44e-24

two-component system sensor histidine kinase AtoS;


Pssm-ID: 236901 [Multi-domain]  Cd Length: 607  Bit Score: 107.75  E-value: 1.44e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 162 IGVVVVGISLSKVDEQIANSRWDVLLTILFSALVCAIGTWSLVR-----------GLKRV----------LLGlEPHEIS 220
Cdd:PRK11360 169 IGYIWANELTEDIRRQAWKMDRRIYAVLAAGLVIGLLLIFLLSRrfsanvdiikdGLSTLendlstrlppLPG-ELGEIS 247
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 221 ---TQFQQR--------QAMLHALKEGVVAVDAHGEVNLINPAAREI---------------LFSgPDKTLAHtPLLADL 274
Cdd:PRK11360 248 qaiNNLAQAlretrslnELILESIADGVIAIDRQGKITTMNPAAEVItglqrhelvgkpyseLFP-PNTPFAS-PLLDTL 325
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 275 QTvlhsGEPMYDRELGC----NGLLLISNTVPIR-SQEAVVGAICTFRDKTEVSQL---LQRLDGMMSYVDALRTTSHEF 346
Cdd:PRK11360 326 EH----GTEHVDLEISFpgrdRTIELSVSTSLLHnTHGEMIGALVIFSDLTERKRLqrrVARQERLAALGELVAGVAHEI 401
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 347 MNKLHVILGLLNMksygkLEEYVLQTAHR------YQA------------DIGDIQHRIKSPVVAGFLISKMQR------ 402
Cdd:PRK11360 402 RNPLTAIRGYVQI-----WRQQTSDPPSQeylsvvLREvdrlnkvidqllEFSRPRESQWQPVSLNALVEEVLQlfqtag 476
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 403 -ATECGFTLKLAEE-SLVPDCPNE-KQVtvlvtvLGNLIENALDAMSgqAEGEIGLLLHY-QDGWLSGEVSDDGPGIPEN 478
Cdd:PRK11360 477 vQARVDFETELDNElPPIWADPELlKQV------LLNILINAVQAIS--ARGKIRIRTWQySDGQVAVSIEDNGCGIDPE 548
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 556282323 479 NIDAIFNKGFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLPWDSKRKR 537
Cdd:PRK11360 549 LLKKIFDPFFTTKAKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINPQGNQ 607
HATPase_c smart00387
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
430-530 1.83e-22

Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.


Pssm-ID: 214643 [Multi-domain]  Cd Length: 111  Bit Score: 92.33  E-value: 1.83e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   430 LVTVLGNLIENALDAMsgQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENR-----GVGLFLANQ 504
Cdd:smart00387   6 LRQVLSNLLDNAIKYT--PEGGRITVTLERDGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRkiggtGLGLSIVKK 83
                           90       100
                   ....*....|....*....|....*.
gi 556282323   505 QLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:smart00387  84 LVELHGGEISVESEPGGGTTFTITLP 109
COG4191 COG4191
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ...
433-530 5.12e-21

Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];


Pssm-ID: 443345 [Multi-domain]  Cd Length: 361  Bit Score: 94.48  E-value: 5.12e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK--GENRGVGLFLANQQLRELG 510
Cdd:COG4191  260 VLLNLLINAIDAMEEGEGGRITISTRREGDYVVISVRDNGPGIPPEVLERIFEPFFTTKpvGKGTGLGLSISYGIVEKHG 339
                         90       100
                 ....*....|....*....|
gi 556282323 511 GTLAVESEPGVFTQFFVHLP 530
Cdd:COG4191  340 GRIEVESEPGGGTTFTITLP 359
BaeS COG0642
Signal transduction histidine kinase [Signal transduction mechanisms];
252-530 7.04e-20

Signal transduction histidine kinase [Signal transduction mechanisms];


Pssm-ID: 440407 [Multi-domain]  Cd Length: 328  Bit Score: 90.74  E-value: 7.04e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 252 AAREILFSGPDKTLAHTPLLADLQTVLHSGEPMYDRELGCNGLLLISNTVPIRSQEAVVGAICTFRDKTEVSQLLQRLDG 331
Cdd:COG0642   29 LLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLLLEEANE 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 332 MMSyvDALRTTSHEFMNKLHVILGLLNMksygkLEEYVLQTAHRYQADIGDIQHRIKSpVVAGFL-ISKMQRATecgFTL 410
Cdd:COG0642  109 AKS--RFLANVSHELRTPLTAIRGYLEL-----LLEELDEEQREYLETILRSADRLLR-LINDLLdLSRLEAGK---LEL 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 411 KLAEESLVP----------DCPNEKQVTV-----------------LVTVLGNLIENALDAMsgQAEGEIGLLLHYQDGW 463
Cdd:COG0642  178 EPEPVDLAElleevvelfrPLAEEKGIELeldlpddlptvrgdpdrLRQVLLNLLSNAIKYT--PEGGTVTVSVRREGDR 255
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556282323 464 LSGEVSDDGPGIPENNIDAIFNKGFSTKGENR----GVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG0642  256 VRISVEDTGPGIPPEDLERIFEPFFRTDPSRRgggtGLGLAIVKRIVELHGGTIEVESEPGKGTTFTVTLP 326
HATPase_c pfam02518
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ...
430-530 7.31e-20

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 460579 [Multi-domain]  Cd Length: 109  Bit Score: 84.73  E-value: 7.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  430 LVTVLGNLIENALDAMSGQAEGEIGLllhYQDGWLSGEVSDDGPGIPENNIDAIFNKGFS---TKGENRGVGLFLANQQL 506
Cdd:pfam02518   6 LRQVLSNLLDNALKHAAKAGEITVTL---SEGGELTLTVEDNGIGIPPEDLPRIFEPFSTadkRGGGGTGLGLSIVRKLV 82
                          90       100
                  ....*....|....*....|....
gi 556282323  507 RELGGTLAVESEPGVFTQFFVHLP 530
Cdd:pfam02518  83 ELLGGTITVESEPGGGTTVTLTLP 106
sCache_3_2 pfam17203
Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes ...
47-178 1.34e-19

Single cache domain 3; This domain is associated to sensor histidine kinases and recognizes citrate and TCA cycle intermediates, Ag(II), Zn(II), Mg(II) (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 435783 [Multi-domain]  Cd Length: 140  Bit Score: 85.16  E-value: 1.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   47 SNATRDgLKETALAVARTMADMPQVKRGLAAPPQQQIIQPLAQAITRRNDLLYAIVTDMHGIRYSHPDSSIIGKPFIGHD 126
Cdd:pfam17203   4 ADLTRQ-LERRALALARSVAASPVVRVALTDPEPYPGLQALVESVRRITGADYVVIADRRGRVLAHPDPERVGRRLSGPA 82
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 556282323  127 IQPTLQ-GKENVAINHGVLAPALRVFTPVFNDQHQQIGVVVVGISLSKVDEQI 178
Cdd:pfam17203  83 TAPALTaGRSYTGTVTGTLGPSLDAKLPIFDADGRVIGIVSVGVKQDSITAAL 135
HATPase cd00075
Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ...
430-529 4.98e-19

Histidine kinase-like ATPase domain; This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.


Pssm-ID: 340391 [Multi-domain]  Cd Length: 102  Bit Score: 82.27  E-value: 4.98e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSgqAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK----GENRGVGLFLANQQ 505
Cdd:cd00075    1 LEQVLSNLLDNALKYSP--PGGTIEISLRQEGDGVVLEVEDNGPGIPEEDLERIFERFYRGDksreGGGTGLGLAIVRRI 78
                         90       100
                 ....*....|....*....|....
gi 556282323 506 LRELGGTLAVESEPGVFTQFFVHL 529
Cdd:cd00075   79 VEAHGGRITVESEPGGGTTFTVTL 102
KdpD COG2205
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
324-530 5.86e-19

K+-sensing histidine kinase KdpD [Signal transduction mechanisms];


Pssm-ID: 441807 [Multi-domain]  Cd Length: 239  Bit Score: 86.11  E-value: 5.86e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 324 QLLQRLDGMMSyvDALRTTSHEFMNKLHVILGLLNMksygkLEEYVLQTAHRYQADIGDIQH---RIKSpVVAGFL-ISK 399
Cdd:COG2205    7 EELEELERLKS--EFLANVSHELRTPLTSILGAAEL-----LLDEEDLSPEERRELLEIIREsaeRLLR-LIEDLLdLSR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 400 MQRAtecGFTLKLAEESLVP----------DCPNEKQVTV-----------------LVTVLGNLIENALDAmsGQAEGE 452
Cdd:COG2205   79 LESG---KLSLELEPVDLAElleeaveelrPLAEEKGIRLeldlppelplvyadpelLEQVLANLLDNAIKY--SPPGGT 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 453 IGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENR----GVGLFLANQQLRELGGTLAVESEPGVFTQFFVH 528
Cdd:COG2205  154 ITISARREGDGVRISVSDNGPGIPEEELERIFERFYRGDNSRGeggtGLGLAIVKRIVEAHGGTIWVESEPGGGTTFTVT 233

                 ..
gi 556282323 529 LP 530
Cdd:COG2205  234 LP 235
HATPase_HupT_MifS-like cd16976
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
433-529 1.07e-17

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhodobacter capsulatus HupT and Pseudomonas aeruginosa MifS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Rhodobacter capsulatus HupT of the HupT-HupR two-component regulatory system (TCS), which regulates the synthesis of HupSL, a membrane bound [NiFe]hydrogenase. It also contains the HATPase domain of Pseudomonas aeruginosa MifS, the HK of the MifS-MifR TCS, which may be involved in sensing alpha-ketoglutarate and regulating its transport and subsequent metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also have a C-terminal PAS sensor domain.


Pssm-ID: 340435 [Multi-domain]  Cd Length: 102  Bit Score: 78.65  E-value: 1.07e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK--GENRGVGLFLANQQLRELG 510
Cdd:cd16976    4 VLMNLLQNALDAMGKVENPRIRIAARRLGGRLVLVVRDNGPGIAEEHLSRVFDPFFTTKpvGKGTGLGLSISYGIVEEHG 83
                         90
                 ....*....|....*....
gi 556282323 511 GTLAVESEPGVFTQFFVHL 529
Cdd:cd16976   84 GRLSVANEEGAGARFTFDL 102
WalK COG5002
Sensor histidine kinase WalK [Signal transduction mechanisms];
430-530 1.12e-13

Sensor histidine kinase WalK [Signal transduction mechanisms];


Pssm-ID: 444026 [Multi-domain]  Cd Length: 390  Bit Score: 72.66  E-value: 1.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAmsGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIF------NKGFSTKGENRGVGLFLAN 503
Cdd:COG5002  282 LEQVLTNLLDNAIKY--TPEGGTITVSLREEDDQVRISVRDTGIGIPEEDLPRIFerfyrvDKSRSRETGGTGLGLAIVK 359
                         90       100
                 ....*....|....*....|....*..
gi 556282323 504 QQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG5002  360 HIVEAHGGRIWVESEPGKGTTFTITLP 386
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
214-332 1.71e-13

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 72.50  E-value: 1.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 214 LEPHEISTQFQqrqAMLHALKEGVVAVDAHGEVNLINPAAREILFSGPDKTL--------AHTPLLAdlqtVLHSGEPMY 285
Cdd:COG3829    4 LELKELEEELE---AILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIgknvteliPNSPLLE----VLKTGKPVT 76
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 556282323 286 DR--ELGCNGLLLISNTVPIRSQEAVVGAICTFRDKTEVSQLLQRLDGM 332
Cdd:COG3829   77 GViqKTGGKGKTVIVTAIPIFEDGEVIGAVETFRDITELKRLERKLREE 125
KinE COG5809
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ...
218-530 3.01e-13

Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444511 [Multi-domain]  Cd Length: 489  Bit Score: 71.93  E-value: 3.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 218 EISTQFQQRQAMLHALKEGVVAVDAHGEVNLINPAAREIL---------------FSGPDKTLAHTPLladlQTVLHSGE 282
Cdd:COG5809  135 ALRESEEKFRLIFNHSPDGIIVTDLDGRIIYANPAACKLLgisieeligksilelIHSDDQENVAAFI----SQLLKDGG 210
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 283 PMY--DRELGCNG--LLLISNTVPIRSQEAVVGAICTFRDKTEVSQLLQRLdgmmSYVDALR-------TTSHEFMNKLH 351
Cdd:COG5809  211 IAQgeVRFWTKDGrwRLLEASGAPIKKNGEVDGIVIIFRDITERKKLEELL----RKSEKLSvvgelaaGIAHEIRNPLT 286
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 352 VILGLLNMKSYGKLEEY----------------------VLQTAHRYQADIGDIQHRIKSpvvagfLISKMQ-RATECGF 408
Cdd:COG5809  287 SLKGFIQLLKDTIDEEQktyldimlseldriesiiseflVLAKPQAIKYEPKDLNTLIEE------VIPLLQpQALLKNV 360
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 409 TLKLAEESLVPD--C-PNE-KQVTVlvtvlgNLIENALDAMSGQaeGEIGLLLHYQD-GWLSGEVSDDGPGIPENNIDAI 483
Cdd:COG5809  361 QIELELEDDIPDilGdENQlKQVFI------NLLKNAIEAMPEG--GNITIETKAEDdDKVVISVTDEGCGIPEERLKKL 432
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 556282323 484 FNKGFSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG5809  433 GEPFYTTKEKGTGLGLMVSYKIIEEHGGKITVESEVGKGTTFSITLP 479
HATPase_AtoS-like cd16943
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 6.57e-13

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.


Pssm-ID: 340419 [Multi-domain]  Cd Length: 105  Bit Score: 65.14  E-value: 6.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQAEGEIGLLLHYQDGWLsgEVSDDGPGIPENNIDAIFNKGFSTK--GENRGVGLFLANQQLR 507
Cdd:cd16943    4 LNQVLLNLLVNAAQAMEGRGRITIRTWAHVDQVLI--EVEDTGSGIDPEILGRIFDPFFTTKpvGEGTGLGLSLSYRIIQ 81
                         90       100
                 ....*....|....*....|...
gi 556282323 508 ELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16943   82 KHGGTIRVASVPGGGTRFTIILP 104
HATPase_TmoS-FixL-DctS-like cd16920
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
433-530 2.38e-12

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Rhizobium meliloti FixL, and Rhodobacter capsulatus DctS; includes hybrid sensor histidine kinase similar to Pseudomonas mendocina TmoS; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs), such as Pseudomonas mendocina TmoS HK of the TmoS-TmoT TCS, which controls the expression of the toluene-4-monooxygenase pathway, Rhizobium meliloti FixL HK of the FixL-FixJ TCS, which regulates the expression of the genes related to nitrogen fixation in the root nodule in response to O(2) levels, and Rhodobacter capsulatus DctS of the DctS-DctR TCS, which controls synthesis of the high-affinity C4-dicarboxylate transport system. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and PAS sensor domain(s); many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340397 [Multi-domain]  Cd Length: 104  Bit Score: 63.18  E-value: 2.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMS-GQAEGEIgLLLHYQ---DGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQQLRE 508
Cdd:cd16920    4 VLINLVRNGIEAMSeGGCERRE-LTIRTSpadDRAVTISVKDTGPGIAEEVAGQLFDPFYTTKSEGLGMGLSICRSIIEA 82
                         90       100
                 ....*....|....*....|..
gi 556282323 509 LGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16920   83 HGGRLSVESPAGGGATFQFTLP 104
KinA COG5805
Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle ...
308-530 3.73e-12

Sporulation sensor histidine kinase A (Stage II sporulation protein SpoIIF/SpoIIJ) [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 444507 [Multi-domain]  Cd Length: 496  Bit Score: 68.60  E-value: 3.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 308 AVVGAICTFRD---KTEVSQLLQRLDgMMSYVDALRTT-SHEFMNKLHVILGLLNMKSyGKLEEYvlqtAHRYQADIGDI 383
Cdd:COG5805  257 SVKGILVILRDiteKKEAEELMARSE-KLSIAGQLAAGiAHEIRNPLTSIKGFLQLLQ-PGIEDK----EEYFDIMLSEL 330
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 384 QhRIKS----------PVVAGF---LISKMQRAT-----------ECGFTLKLAEESLVPDCpNEKQvtvLVTVLGNLIE 439
Cdd:COG5805  331 D-RIESiiseflalakPQAVNKekeNINELIQDVvtlleteailhNIQIRLELLDEDPFIYC-DENQ---IKQVFINLIK 405
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 440 NALDAM-SGqaeGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQQLRELGGTLAVESE 518
Cdd:COG5805  406 NAIEAMpNG---GTITIHTEEEDNSVIIRVIDEGIGIPEERLKKLGEPFFTTKEKGTGLGLMVSYKIIENHNGTIDIDSK 482
                        250
                 ....*....|..
gi 556282323 519 PGVFTQFFVHLP 530
Cdd:COG5805  483 VGKGTTFTITLP 494
PRK13837 PRK13837
two-component system VirA-like sensor kinase;
307-534 1.92e-11

two-component system VirA-like sensor kinase;


Pssm-ID: 237526 [Multi-domain]  Cd Length: 828  Bit Score: 66.62  E-value: 1.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 307 EAVVGAICTFRDKTEVSQLLQRLD--GMMSYVDALRT-TSHEFMNKLHVILGLLNM-----KSYGKLEEYVL---QTAHR 375
Cdd:PRK13837 419 DCLAHAIERRRLETERDALERRLEhaRRLEAVGTLASgIAHNFNNILGAILGYAEMalnklARHSRAARYIDeiiSAGAR 498
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 376 YQADIGDI------QHRIKSPVVAGFLI----SKMQRATECGFTLKL---AEESLVPDCPNEKQVTVLvtvlgNLIENAL 442
Cdd:PRK13837 499 ARLIIDQIlafgrkGERNTKPFDLSELVteiaPLLRVSLPPGVELDFdqdQEPAVVEGNPAELQQVLM-----NLCSNAA 573
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 443 DAMSGQAEGEIGLLLHY---QDGWLSGE----------VSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQQLREL 509
Cdd:PRK13837 574 QAMDGAGRVDISLSRAKlraPKVLSHGVlppgryvllrVSDTGAGIDEAVLPHIFEPFFTTRAGGTGLGLATVHGIVSAH 653
                        250       260
                 ....*....|....*....|....*
gi 556282323 510 GGTLAVESEPGVFTQFFVHLPWDSK 534
Cdd:PRK13837 654 AGYIDVQSTVGRGTRFDVYLPPSSK 678
HATPase_EvgS-ArcB-TorS-like cd16922
Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid ...
433-530 2.37e-11

Histidine kinase-like ATPase domain of two-component sensor histidine kinases, many are hybrid sensor histidine kinases, similar to Escherichia coli EvgS, ArcB, TorS, BarA, RcsC; This family contains the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinases (HKs), including the following Escherichia coli HKs: EvgS, a HK of the EvgS-EvgA two-component system (TCS) that confers acid resistance; ArcB, a HK of the ArcB-ArcA TCS that modulates the expression of numerous genes in response to respiratory growth conditions; TorS, a HK of the TorS-TorR TCS which is involved in the anaerobic utilization of trimethylamine-N-oxide; BarA, a HK of the BarA-UvrY TCS involved in the regulation of carbon metabolism; and RcsC, a HK of the RcsB-RcsC TCS which regulates the expression of the capsule operon and of the cell division gene ftsZ. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), with most having accessory sensor domain(s) such as GAF, PAS and CHASE; many are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340399 [Multi-domain]  Cd Length: 110  Bit Score: 60.58  E-value: 2.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAmsgQAEGEIGLLLHYQD-----GWLSGEVSDDGPGIPENNIDAIFNK----GFSTKGENRGVGLFLA- 502
Cdd:cd16922    4 ILLNLLGNAIKF---TEEGEVTLRVSLEEeeedgVQLRFSVEDTGIGIPEEQQARLFEPfsqaDSSTTRKYGGTGLGLAi 80
                         90       100
                 ....*....|....*....|....*....
gi 556282323 503 NQQLREL-GGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16922   81 SKKLVELmGGDISVESEPGQGSTFTFTLP 109
PRK10364 PRK10364
two-component system sensor histidine kinase ZraS;
430-536 3.63e-11

two-component system sensor histidine kinase ZraS;


Pssm-ID: 236674 [Multi-domain]  Cd Length: 457  Bit Score: 65.19  E-value: 3.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQaeGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQQLREL 509
Cdd:PRK10364 349 LTQVLLNLYLNAIQAIGQH--GVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQH 426
                         90       100
                 ....*....|....*....|....*..
gi 556282323 510 GGTLAVESEPGVFTQFFVHLPWDSKRK 536
Cdd:PRK10364 427 GGTIQVASQEGKGATFTLWLPVNITRR 453
HATPase_CckA-like cd16919
Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar ...
430-530 5.96e-11

Histidine kinase-like ATPase domain of two-component sensor hybrid histidine kinases, similar to Brucella abortus 2308 CckA; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) similar to Brucella abortus 2308 CckA, which is a component of an essential protein phosphorelay that regulates expression of genes required for growth, division, and intracellular survival; phosphoryl transfer initiates from the sensor kinase CckA and proceeds via the ChpT phosphotransferase to two regulatory substrates: the DNA-binding response regulator CtrA and the phospho-receiver protein CpdR. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), a REC signal receiver domain, and some contain PAS or PAS and GAF sensor domain(s).


Pssm-ID: 340396 [Multi-domain]  Cd Length: 116  Bit Score: 59.70  E-value: 5.96e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAM--SGQAEGEI-------GLLLHYQD----GWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRG 496
Cdd:cd16919    1 LELAILNLAVNARDAMpeGGRLTIETsnqrvdaDYALNYRDlipgNYVCLEVSDTGSGMPAEVLRRAFEPFFTTKEVGKG 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 556282323 497 VGLFLANQQ--LRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16919   81 TGLGLSMVYgfVKQSGGHLRIYSEPGVGTTVRIYLP 116
HATPase_BvrS-ChvG-like cd16953
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 1.50e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Brucella abortus BvrS and Sinorhizobium meliloti ChvG; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Brucella abortus BvrS of the BvrR-BvrS two-component regulatory system (TCS), which controls cell invasion and intracellular survival, as well as Sinorhizobium meliloti and Agrobacterium tumefaciens ChvG of the ChvI-ChvG TCS necessary for endosymbiosis and pathogenicity in plants. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), an accessory HAMP sensor domain, a periplasmic stimulus-sensing domain, and some also have a sensor N-terminal transmembrane domain.


Pssm-ID: 340429 [Multi-domain]  Cd Length: 110  Bit Score: 58.35  E-value: 1.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALdAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTK------GENRGVGLFLAN 503
Cdd:cd16953    1 LGQVLRNLIGNAI-SFSPPDTGRITVSAMPTGKMVTISVEDEGPGIPQEKLESIFDRFYTERpaneafGQHSGLGLSISR 79
                         90       100       110
                 ....*....|....*....|....*....|.
gi 556282323 504 QQLRELGGTLAVE--SEPGVFT--QFFVHLP 530
Cdd:cd16953   80 QIIEAHGGISVAEnhNQPGQVIgaRFTVQLP 110
HATPase_Glnl-NtrB-like cd16918
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 2.16e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli GlnL (synonyms NtrB and NRII); This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs), similar to Escherichia coli GlnL/NtrB/NRII HK of the two-component regulatory system (TCS) GlnL/GlnG (NtrB-NtrC, or NRII-NRI), which regulates the transcription of genes encoding metabolic enzymes and permeases in response to carbon and nitrogen status in E. coli and related bacteria. Also included in this family are Rhodobacter capsulatus NtrB, Azospirillum brasilense NtrB, Vibrio alginolyticus NtrB, Rhizobium leguminosarum biovar phaseoli NtrB, and Herbaspirillum seropedicae NtrB. Escherichia coli GlnL/NtrB/NRII is both a kinase and a phosphatase, catalyzing the phosphorylation and dephosphorylation of GlnG/NtrC/NRI. The kinase and phosphatase activities of GlnL/NtrB/NRII are regulated by the PII signal transduction protein, which on binding to GlnL/NtrB/NRII, inhibits the kinase activity of GlnL/NtrB/NRII and activates the GlnL/NtrB/NRII phosphatase activity. Proteins having this HATPase domain also have a histidine kinase dimerization and phosphoacceptor domain (HisKA); some also contain PAS sensor domain(s).


Pssm-ID: 340395 [Multi-domain]  Cd Length: 109  Bit Score: 57.80  E-value: 2.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQaEGEIGLLLHYQDGW----------LSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGL 499
Cdd:cd16918    1 LIQVFLNLVRNAAQALAGS-GGEIILRTRTQRQVtlghprhrlaLRVSVIDNGPGIPPDLQDTIFYPMVSGRENGTGLGL 79
                         90       100       110
                 ....*....|....*....|....*....|.
gi 556282323 500 FLANQQLRELGGTLAVESEPGvFTQFFVHLP 530
Cdd:cd16918   80 AIAQNIVSQHGGVIECDSQPG-HTVFSVSLP 109
HATPase_BceS-YxdK-YvcQ-like cd16948
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 3.08e-10

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis BceS and Bacillus thuringiensis YvcQ, the HKs of the two-component regulatory system (TCSs) BceS-BceR and YvcQ-YvcP, repsectively, which are both involved in regulating bacitracin resistance. It also includes the HATPase domain of YxdK, the HK of YxdK-YxdJ TCS involved in sensing antimicrobial compounds.


Pssm-ID: 340424 [Multi-domain]  Cd Length: 109  Bit Score: 57.30  E-value: 3.08e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDaMSGQaEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFStkGENR-------GVGLFLA 502
Cdd:cd16948    6 LSFIIGQIVSNALK-YSKQ-GGKIEIYSETNEQGVVLSIKDFGIGIPEEDLPRVFDKGFT--GENGrnfqestGMGLYLV 81
                         90       100
                 ....*....|....*....|....*...
gi 556282323 503 NQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16948   82 KKLCDKLGHKIDVESEVGEGTTFTITFP 109
PRK10490 PRK10490
sensor protein KdpD; Provisional
433-530 4.97e-09

sensor protein KdpD; Provisional


Pssm-ID: 236701 [Multi-domain]  Cd Length: 895  Bit Score: 59.28  E-value: 4.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEgeIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKgFStKGENR----GVGLFLA-NQQLR 507
Cdd:PRK10490 782 VLINLLENAVKYAGAQAE--IGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDK-FA-RGNKEsaipGVGLGLAiCRAIV 857
                         90       100
                 ....*....|....*....|....
gi 556282323 508 EL-GGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK10490 858 EVhGGTIWAENRPEGGACFRVTLP 881
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
420-530 5.18e-09

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 58.49  E-value: 5.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 420 DCPNE-KQVTVLVTVLGNLIENA----LDAMSGQaeGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKgFSTKGEN 494
Cdd:COG2972  326 EIDEElLDLLIPKLILQPLVENAiehgIEPKEGG--GTIRISIRKEGDRLVITVEDNGVGMPEEKLEKLLEE-LSSKGEG 402
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 556282323 495 RGVGLFLANQQLREL---GGTLAVESEPGVFTQFFVHLP 530
Cdd:COG2972  403 RGIGLRNVRERLKLYygeEYGLEIESEPGEGTTVTIRIP 441
HATPase_CheA-like cd16916
Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some ...
430-530 5.88e-09

Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases; This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.


Pssm-ID: 340393 [Multi-domain]  Cd Length: 178  Bit Score: 55.67  E-value: 5.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALD----------AMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIP---------ENNI---------- 480
Cdd:cd16916   39 LADPLTHLLRNAVDhgieapeerlAAGKPPEGTITLRAEHQGNQVVIEVSDDGRGIDrekirekaiERGLitadeaatls 118
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 481 -----DAIFNKGFSTKGE-----NRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16916  119 ddevlNLIFAPGFSTAEQvtdvsGRGVGMDVVKRSIESLGGTIEVESEPGQGTTFTIRLP 178
COG4251 COG4251
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ...
430-530 1.60e-08

Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];


Pssm-ID: 443393 [Multi-domain]  Cd Length: 503  Bit Score: 57.10  E-value: 1.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFN--KGFSTKGENR--GVGLFLANQQ 505
Cdd:COG4251  395 LRQVFQNLISNAIKYSRPGEPPRIEIGAEREGGEWVFSVRDNGIGIDPEYAEKIFEifQRLHSRDEYEgtGIGLAIVKKI 474
                         90       100
                 ....*....|....*....|....*
gi 556282323 506 LRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG4251  475 VERHGGRIWVESEPGEGATFYFTLP 499
HATPase_AgrC-ComD-like cd16935
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
391-524 1.65e-08

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.


Pssm-ID: 340412 [Multi-domain]  Cd Length: 134  Bit Score: 53.35  E-value: 1.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 391 VVAGFLISKMQRATECG--FTLKLAEESLVPDCPNEkqvtvLVTVLGNLIENALDAMSGQAEGE--IGLLLHYQDGWLSG 466
Cdd:cd16935    1 ALDSLLSEKLELAREKGieFTIEIDIPILLPISPLD-----LCIIFGNLLDNAIEACAKIDKENrfIHLKIRQKKGFLII 75
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 556282323 467 EVSDDgpgiPENNIDAIFNKGFSTKGE-NRGVGLFLANQQLRELGGTLAVESEPGVFTQ 524
Cdd:cd16935   76 SIENS----YEGELKKKNGLFLSTKKDkNHGIGLKSIREIVKKYNGNLSIEYENGIFTL 130
HATPase_PhoQ-like cd16954
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-519 1.49e-07

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG; This family includes histidine kinase-like ATPase (HATPase) domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG. PhoQ is the histidine kinase (HK) of the PhoP-PhoQ two-component regulatory system (TCS), which responds to the levels of Mg2+ and Ca2+, controls virulence, mediates the adaptation to Mg2+-limiting environments, and regulates numerous cellular activities. Providencia stuartii AarG is a putative sensor kinase which controls the expression of the 2'-N-acetyltransferase and an intrinsic multiple antibiotic resistance (Mar) response in Providencia stuartii. The AarG product is similar to PhoQ in that it is able to restore wild-type levels of resistance to a Salmonella typhimurium phoQ mutant. However, the expression of the 2'-N-acetyltransferase gene and of aarP (a gene encoding a transcriptional activator of 2'-N-acetyltransferase) are not significantly affected by the levels of Mg2+ or Ca2+. Most proteins in this group contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have an accessory HAMP sensor domain, and some have an intracellular membrane -interaction PhoQ sensor domain.


Pssm-ID: 340430 [Multi-domain]  Cd Length: 135  Bit Score: 50.32  E-value: 1.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQAEgeigLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKG--FSTKGENRGVGLFLANQQLR 507
Cdd:cd16954   38 LMELLGNLLDNACKWCLEFVE----VTARQTDGGLHLIVDDDGPGVPESQRSKIFQRGqrLDEQRPGQGLGLAIAKEIVE 113
                         90
                 ....*....|..
gi 556282323 508 ELGGTLAVESEP 519
Cdd:cd16954  114 QYGGELSLSDSP 125
PRK13557 PRK13557
histidine kinase; Provisional
343-535 1.84e-07

histidine kinase; Provisional


Pssm-ID: 237425 [Multi-domain]  Cd Length: 540  Bit Score: 53.91  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 343 SHEFMNKLHVILGLLNmksygkleeyVLQTAHRYQ-ADIGDIQ---HRIKSPV---------VAGF-------------- 395
Cdd:PRK13557 171 AHDFNNLLQVMSGYLD----------VIQAALSHPdADRGRMArsvENIRAAAeraatltqqLLAFarkqrlegrvlnln 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 396 -LISKM----QRATECGFTLKLAEESLVPDC---PNEKQVTVLvtvlgNLIENALDAMSGQAEGEI---GLLLHYQDG-- 462
Cdd:PRK13557 241 gLVSGMgelaERTLGDAVTIETDLAPDLWNCridPTQAEVALL-----NVLINARDAMPEGGRVTIrtrNVEIEDEDLam 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 463 --------WLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFL------ANQQlrelGGTLAVESEPGVFTQFFVH 528
Cdd:PRK13557 316 yhglppgrYVSIAVTDTGSGMPPEILARVMDPFFTTKEEGKGTGLGLsmvygfAKQS----GGAVRIYSEVGEGTTVRLY 391

                 ....*..
gi 556282323 529 LPWDSKR 535
Cdd:PRK13557 392 FPASDQA 398
PRK09303 PRK09303
histidine kinase;
433-530 1.90e-07

histidine kinase;


Pssm-ID: 236462 [Multi-domain]  Cd Length: 380  Bit Score: 53.42  E-value: 1.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMsgQAEGEIGL-LLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGF----STKGENRGVGLFLANQQLR 507
Cdd:PRK09303 276 VLLNLLDNAIKYT--PEGGTITLsMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVrlprDEGTEGYGIGLSVCRRIVR 353
                         90       100
                 ....*....|....*....|...
gi 556282323 508 ELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK09303 354 VHYGQIWVDSEPGQGSCFHFTLP 376
HATPase_YcbM-like cd16947
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
418-529 3.14e-07

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis YcbM; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis YcbM, a HK of the two-component system YcbM-YcbL. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA).


Pssm-ID: 340423 [Multi-domain]  Cd Length: 125  Bit Score: 49.43  E-value: 3.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 418 VPDCPNEKQVT--VLVTVLGNLIENALDamSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFsTKGENR 495
Cdd:cd16947    7 IPDRPIYANANteALQRILKNLISNAIK--YGSDGKFLGMTLREDEKHVYIDIWDKGKGISETEKDHVFERLY-TLEDSR 83
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 556282323 496 -------GVGLFLANQQLRELGGTLAVESEPGVFTQFFVHL 529
Cdd:cd16947   84 nsakqgnGLGLTITKRLAESMGGSIYVNSKPYEKTVFTVTL 124
HATPase_c_5 pfam14501
GHKL domain; This family represents the structurally related ATPase domains of histidine ...
430-524 5.99e-07

GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 433996 [Multi-domain]  Cd Length: 102  Bit Score: 47.98  E-value: 5.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  430 LVTVLGNLIENALDAMSGQAEG-EIGLLLHYQDGWLSGEVSDdgpgiPENNIDAIFNKGFSTK--GENRGVGLFLANQQL 506
Cdd:pfam14501   6 LCVIFGNLLDNAIEACSKIDDNrFIRLKIREKQNFLIIRIEN-----TYEGELKFEGKLPSTKtkGDGHGIGLKSIRRIV 80
                          90
                  ....*....|....*...
gi 556282323  507 RELGGTLAVESEPGVFTQ 524
Cdd:pfam14501  81 KKYGGNLSTEIENGIFTL 98
CheA COG0643
Chemotaxis protein histidine kinase CheA [Signal transduction mechanisms];
449-530 1.41e-06

Chemotaxis protein histidine kinase CheA [Signal transduction mechanisms];


Pssm-ID: 440408 [Multi-domain]  Cd Length: 563  Bit Score: 50.95  E-value: 1.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 449 AEGEIGLLLHYQDGWLSGEVSDDGPGIpenNIDAIFNK---------------------------GFSTKGE-----NRG 496
Cdd:COG0643  307 ETGTITLSAYHEGGRVVIEVSDDGRGL---DLEKIRAKaiekglitaeeaaalsdeellelifapGFSTAEEvtdlsGRG 383
                         90       100       110
                 ....*....|....*....|....*....|....
gi 556282323 497 VGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:COG0643  384 VGMDVVKTNIEALGGTIEIESEPGKGTTFTLRLP 417
HATPase_CreC-like cd16945
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
434-520 1.57e-06

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CreC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli CreC of the CreC-CreB two-component regulatory system (TCS) involved in catabolic regulation. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and accessory sensory domain(s) such as HAMP, CACHE or PAS.


Pssm-ID: 340421 [Multi-domain]  Cd Length: 106  Bit Score: 46.68  E-value: 1.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 434 LGNLIENALDAMSgqAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFS-----TKGENRGVGLFLANQQLRE 508
Cdd:cd16945    9 INNLLDNAIDFSP--EGGLIALQLEADTEGIELLVFDEGSGIPDYALNRVFERFYSlprphSGQKSTGLGLAFVQEVAQL 86
                         90
                 ....*....|..
gi 556282323 509 LGGTLAVESEPG 520
Cdd:cd16945   87 HGGRITLRNRPD 98
COG3920 COG3920
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ...
437-535 3.90e-06

Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];


Pssm-ID: 443125 [Multi-domain]  Cd Length: 495  Bit Score: 49.52  E-value: 3.90e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 437 LIENALD-AMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENnidaifnkgfSTKGENRGVGLFLANQQLRELGGTLAV 515
Cdd:COG3920  407 LVTNALKhAFLSGEGGRIRVSWRREDGRLRLTVSDNGVGLPED----------VDPPARKGLGLRLIRALVRQLGGTLEL 476
                         90       100
                 ....*....|....*....|
gi 556282323 516 ESEPGvfTQFFVHLPWDSKR 535
Cdd:COG3920  477 DRPEG--TRVRITFPLAELA 494
PRK11100 PRK11100
sensory histidine kinase CreC; Provisional
434-520 5.21e-06

sensory histidine kinase CreC; Provisional


Pssm-ID: 236846 [Multi-domain]  Cd Length: 475  Bit Score: 49.07  E-value: 5.21e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 434 LGNLIENALD-AMSGqaeGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFS-----TKGENRGVGLFLANQQLR 507
Cdd:PRK11100 373 LGNLLDNAIDfSPEG---GTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSlprpaNGRKSTGLGLAFVREVAR 449
                         90
                 ....*....|...
gi 556282323 508 ELGGTLAVESEPG 520
Cdd:PRK11100 450 LHGGEVTLRNRPE 462
PAS pfam00989
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ...
224-318 9.31e-06

PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395786 [Multi-domain]  Cd Length: 113  Bit Score: 44.72  E-value: 9.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  224 QQRQAMLHALKEGVVAVDAHGEVNLINPAAREIL-FSGPD---KTLA-------HTPLLADLQTVLHSGEP---MYDREL 289
Cdd:pfam00989   1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLgLSREEvigKSLLdlipeedDAEVAELLRQALLQGEEsrgFEVSFR 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 556282323  290 GCNG--LLLISNTVPIRS-QEAVVGAICTFRD 318
Cdd:pfam00989  81 VPDGrpRHVEVRASPVRDaGGEILGFLGVLRD 112
glnL PRK11073
nitrogen regulation protein NR(II);
433-530 1.29e-05

nitrogen regulation protein NR(II);


Pssm-ID: 182947 [Multi-domain]  Cd Length: 348  Bit Score: 47.38  E-value: 1.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMsGQAEGEIGL--------LLHYQDGWLSG--EVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLA 502
Cdd:PRK11073 241 VLLNIVRNALQAL-GPEGGTITLrtrtafqlTLHGERYRLAAriDIEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIA 319
                         90       100
                 ....*....|....*....|....*...
gi 556282323 503 NQQLRELGGTLAVESEPGvFTQFFVHLP 530
Cdd:PRK11073 320 RNLIDQHSGKIEFTSWPG-HTEFSVYLP 346
PRK15347 PRK15347
two component system sensor kinase;
429-530 1.67e-05

two component system sensor kinase;


Pssm-ID: 237951 [Multi-domain]  Cd Length: 921  Bit Score: 47.71  E-value: 1.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 429 VLVTVLGNlienaldAMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFL--ANQQL 506
Cdd:PRK15347 517 ILVNLLGN-------AVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTHSQGTGLGLtiASSLA 589
                         90       100
                 ....*....|....*....|....
gi 556282323 507 RELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK15347 590 KMMGGELTLFSTPGVGSCFSLVLP 613
RsbW COG2172
Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];
401-520 2.45e-05

Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms];


Pssm-ID: 441775 [Multi-domain]  Cd Length: 127  Bit Score: 43.75  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 401 QRATECGFTLKLAEEslvpdcpnekqvtvLVTVLGNLIENALD-AMSGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENN 479
Cdd:COG2172   20 ALLRELGLDEDDADD--------------LVLAVSEAVTNAVRhAYGGDPDGPVEVELELDPDGLEIEVRDEGPGFDPED 85
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 556282323 480 IDaifnKGFSTKGEnRGVGLFLANQQLRELGgtlaVESEPG 520
Cdd:COG2172   86 LP----DPYSTLAE-GGRGLFLIRRLMDEVE----YESDPG 117
HATPase_EnvZ-like cd16950
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
433-513 2.54e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli EnvZ and Pseudomonas aeruginosa BfmS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Escherichia coli EnvZ of the EnvZ-OmpR two-component regulatory system (TCS), which functions in osmoregulation. It also contains the HATPase domain of Pseudomonas aeruginosa BfmS, the HK of the BfmSR TCS, which functions in the regulation of the rhl quorum-sensing system and bacterial virulence in P. aeruginosa. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a periplasmic domain.


Pssm-ID: 340426 [Multi-domain]  Cd Length: 101  Bit Score: 43.21  E-value: 2.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDamsgQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFN---KGFSTKG-ENRGVGLFLANQQLRE 508
Cdd:cd16950    4 VLSNLVDNALR----YGGGWVEVSSDGEGNRTRIQVLDNGPGIAPEEVDELFQpfyRGDNARGtSGTGLGLAIVQRISDA 79

                 ....*
gi 556282323 509 LGGTL 513
Cdd:cd16950   80 HGGSL 84
PRK09959 PRK09959
acid-sensing system histidine kinase EvgS;
305-530 3.08e-05

acid-sensing system histidine kinase EvgS;


Pssm-ID: 182169 [Multi-domain]  Cd Length: 1197  Bit Score: 47.04  E-value: 3.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  305 SQEAVVgaICTFRDKTEVSQLLQRLD--------GMMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKL--EEYVLQTAH 374
Cdd:PRK09959  676 SDHAVY--ICGWQDITETRDLIHALEvernkainATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLskEQRVEAISL 753
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  375 RYQAD------IGDI---------QHRIKSPVVAgflISKMQRATECGFTLKLAEESLVPDC----PNEKQVTV----LV 431
Cdd:PRK09959  754 AYATGqsllglIGEIldvdkiesgNYQLQPQWVD---IPTLVQNTCHSFGAIAASKSIALSCsstfPDHYLVKIdpqaFK 830
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  432 TVLGNLIENALDAMSGQAEGEIGLLLHYQD--GWLSGEVSDDGPGIPENNIDAIFnKGFSTKGENR-----GVGLFLANQ 504
Cdd:PRK09959  831 QVLSNLLSNALKFTTEGAVKITTSLGHIDDnhAVIKMTIMDSGSGLSQEEQQQLF-KRYSQTSAGRqqtgsGLGLMICKE 909
                         250       260
                  ....*....|....*....|....*.
gi 556282323  505 QLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK09959  910 LIKNMQGDLSLESHPGIGTTFTITIP 935
SPOB_a pfam14689
Sensor_kinase_SpoOB-type, alpha-helical domain; Sporulation initiation phospho-transferase B ...
336-369 4.40e-05

Sensor_kinase_SpoOB-type, alpha-helical domain; Sporulation initiation phospho-transferase B or SpoOB is part of a phospho-relay that initiates sporulation in Bacillus subtilis. Spo0B is a two-domain protein consisting of an N-terminal alpha-helical hairpin domain and a C-terminal alpha/beta domain. Two subunits of Spo0B dimerize by a parallel association of helical hairpins to form a novel four-helix bundle from which the active histidine - involved in the auto-phosphorylation - protrudes. In the phospho-relay, the signal-receptor histidine kinases are dephosphorylated by a common response regulator, Spo0F. Spo0B then takes phosphorylated Spo0F as substrate thereby mediating the transfer of a phosphoryl group to Spo0A, the ultimate transcription factor. The exact function of this alpha-helical domain is not known; it does not always occur just as the N-terminal domain of SPOB_ab, pfam14682. SCOP describes this domain as a histidine kinase-like fold lacking the kinase ATP-binding site.


Pssm-ID: 434130 [Multi-domain]  Cd Length: 62  Bit Score: 41.46  E-value: 4.40e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 556282323  336 VDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYV 369
Cdd:pfam14689  13 IKALRHQRHDFLNHLQVISGYLQLGRYDRAEEYI 46
HATPase_FilI-like cd16921
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
430-530 7.27e-05

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Methanosaeta harundinacea FilI and some hybrid sensor histidine kinases; This family includes FilI, the histidine kinase (HK) component of FilI-FilRs, a two-component signal transduction system (TCS) of the methanogenic archaeon, Methanosaeta harundinacea, which is involved in regulating methanogenesis. The cytoplasmic HK core consists of a C-terminal HK-like ATPase domain (represented here) and a histidine kinase dimerization and phosphoacceptor domain (HisKA) domain, which, in FilI, are coupled to CHASE, HAMP, PAS, and GAF sensor domains. FilI-FilRs catalyzes the phosphotransfer between FilI (HK) and FilRs (FilR1 and FilR2, response regulators) of the TCS. TCSs are predicted to be of bacterial origin, and acquired by archaea by horizontal gene transfer. This model also includes related HATPase domains such as that of Synechocystis sp. PCC6803 phytochrome-like protein Cph1. Proteins having this HATPase domain and HisKA domain also have accessory sensor domains such as CHASE, GAF, HAMP and PAS; some are hybrid sensor histidine kinases as they also contain a REC signal receiver domain.


Pssm-ID: 340398 [Multi-domain]  Cd Length: 105  Bit Score: 41.93  E-value: 7.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 430 LVTVLGNLIENALDAMSGQAEGEIGLllHYQD---GWLSgEVSDDGPGIPE---NNIDAIFNKGFS-TKGENRGVGLFLA 502
Cdd:cd16921    1 LGQVLTNLLGNAIKFRRPRRPPRIEV--GAEDvgeEWTF-YVRDNGIGIDPeyaEKVFGIFQRLHSrEEYEGTGVGLAIV 77
                         90       100
                 ....*....|....*....|....*...
gi 556282323 503 NQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16921   78 RKIIERHGGRIWLESEPGEGTTFYFTLP 105
PRK11091 PRK11091
aerobic respiration control sensor protein ArcB; Provisional
428-530 8.99e-05

aerobic respiration control sensor protein ArcB; Provisional


Pssm-ID: 236842 [Multi-domain]  Cd Length: 779  Bit Score: 45.32  E-value: 8.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 428 TVLVTVLGNLIENAldaMSGQAEGEIGLLLHYQDG-WLSGEVSDDGPGIPENNIDAIFNKGFSTKGEN-------RGVGL 499
Cdd:PRK11091 397 TRLRQILWNLISNA---VKFTQQGGVTVRVRYEEGdMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHggkpatgTGIGL 473
                         90       100       110
                 ....*....|....*....|....*....|.
gi 556282323 500 FLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK11091 474 AVSKRLAQAMGGDITVTSEEGKGSCFTLTIH 504
HATPase_NtrY-like cd16944
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
433-520 1.31e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Azorhizobium caulinodans NtrY; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Azorhizobium caulinodans ORS571 NtrY of the NtrY-NtrX TCS, which is involved in nitrogen fixation and metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also have PAS sensor domains.


Pssm-ID: 340420 [Multi-domain]  Cd Length: 108  Bit Score: 41.37  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEGEIGLLLHY---QDGWLSGEVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLANQQLREL 509
Cdd:cd16944    8 VLTNILKNAAEAIEGRPSDVGEVRIRVeadQDGRIVLIVCDNGKGFPREMRHRATEPYVTTRPKGTGLGLAIVKKIMEEH 87
                         90
                 ....*....|.
gi 556282323 510 GGTLAVESEPG 520
Cdd:cd16944   88 GGRISLSNREA 98
ComP COG4585
Signal transduction histidine kinase ComP [Signal transduction mechanisms];
452-534 2.65e-04

Signal transduction histidine kinase ComP [Signal transduction mechanisms];


Pssm-ID: 443642 [Multi-domain]  Cd Length: 252  Bit Score: 42.68  E-value: 2.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 452 EIGLLLHYQDGWLSGEVSDDGPGIPENNIDAifnkgfstkgenRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLPW 531
Cdd:COG4585  182 RVTVTLEVDDGELTLTVRDDGVGFDPEAAPG------------GGLGLRGMRERAEALGGTLTIGSAPGGGTRVRATLPL 249

                 ...
gi 556282323 532 DSK 534
Cdd:COG4585  250 AAA 252
HATPase_CpxA-like cd16949
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
436-520 4.02e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli CpxA; This family includes the histidine kinase-like ATPase (HATPase) domains of two-component sensor histidine kinase (HKs) similar to Escherichia coli CpxA, HK of the CpxA-CpxR two-component regulatory system (TCS) which may function in acid stress and in cell wall stability. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA) and a HAMP sensor domain; some also contain a CpxA family periplasmic domain.


Pssm-ID: 340425 [Multi-domain]  Cd Length: 104  Bit Score: 40.00  E-value: 4.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 436 NLIENALDamsgQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGF------STKGENRGVGLFLANQQLREL 509
Cdd:cd16949    7 NVLRNALR----YSPSKILLDISQDGDQWTITITDDGPGVPEDQLEQIFLPFYrvdsarDRESGGTGLGLAIAERAIEQH 82
                         90
                 ....*....|..
gi 556282323 510 GGTL-AVESEPG 520
Cdd:cd16949   83 GGKIkASNRKPG 94
HATPase_RstB-like cd16939
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
433-530 7.82e-04

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Salmonella typhimurium RstB; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Salmonella typhimurium RstB HK of the RstA-RstB two-component regulatory system (TCS), which regulates expression of the constituents participating in pyrimidine metabolism and iron acquisition, and may be required for regulation of Salmonella motility and invasion. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), and a HAMP sensor domain.


Pssm-ID: 340416 [Multi-domain]  Cd Length: 104  Bit Score: 38.95  E-value: 7.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEgeIGLLLhyQDGWLSGEVSDDGPGIPENNIDAIF--------NKGFSTKGenRGVGLFLANQ 504
Cdd:cd16939    4 ALDNLLRNALRYAHRTVR--IALLV--SGGRLTLIVEDDGPGIPAAARERVFepfvrldpSRDRATGG--FGLGLAIVHR 77
                         90       100
                 ....*....|....*....|....*.
gi 556282323 505 QLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16939   78 VALWHGGHVECDDSELGGACFRLTWP 103
HATPase_TutC-TodS-like cd16925
Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas ...
468-530 1.08e-03

Histidine kinase-like ATPase domain of hybrid sensor histidine kinases similar to Pseudomonas putida TodS and Thauera aromatica TutC; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component hybrid sensor histidine kinase (HKs) such Pseudomonas putida TodS HK of the TodS-TodT two-component regulatory system (TCS) which controls the expression of a toluene degradation pathway. Thauera aromatica TutC may be part of a TCS that is involved in anaerobic toluene metabolism. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA), PAS sensor domain(s) and a REC domain.


Pssm-ID: 340402 [Multi-domain]  Cd Length: 110  Bit Score: 39.01  E-value: 1.08e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556282323 468 VSDDGPGIPENNIDAIFNK---GFSTKGENR---GVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16925   42 VSDSGPGIPPNLREEIFERfrqGDGSSTRAHggtGLGLSIVKEFVELHGGTVTVSDAPGGGALFQVELP 110
HATPase_YehU-like cd16956
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
437-530 1.25e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Escherichia coli YehU, a HK of the two-component system (TCS) YehU-YehT which is involved in a nutrient sensing regulatory network. Proteins having this HATPase domain also contain a histidine kinase domain (His-kinase); some have a GAF sensor domain while some have a cupin domain.


Pssm-ID: 340432 [Multi-domain]  Cd Length: 101  Bit Score: 38.57  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 437 LIENA----LDAMSGQAEGEIGLLLHYQDGWLsgEVSDDGPGI-PENNIDAIFNkgfstkgENRGVGLFLANQQLRELGG 511
Cdd:cd16956    9 IVENAvkhgLSGLLDGGRVEITARLDGQHLLL--EVEDNGGGMdPDTLARILIR-------SSNGLGLNLVDKRLRQAFG 79
                         90       100
                 ....*....|....*....|..
gi 556282323 512 T---LAVESEPGVFTQFFVHLP 530
Cdd:cd16956   80 NdygLDIECAPGEGTRITIRLP 101
PRK10604 PRK10604
sensor protein RstB; Provisional
433-519 1.50e-03

sensor protein RstB; Provisional


Pssm-ID: 236724 [Multi-domain]  Cd Length: 433  Bit Score: 41.13  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEgeIGLLLHYQDGWLsgEVSDDGPGIPENNIDAIF--------NKGFSTKGenRGVGLFLANQ 504
Cdd:PRK10604 323 VLDNLLNNALRYAHSRVR--VSLLLDGNQACL--IVEDDGPGIPPEERERVFepfvrldpSRDRATGG--CGLGLAIVHS 396
                         90
                 ....*....|....*
gi 556282323 505 QLRELGGTLAVESEP 519
Cdd:PRK10604 397 IALAMGGSVNCDESE 411
COG4192 COG4192
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ...
433-517 1.55e-03

Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];


Pssm-ID: 443346 [Multi-domain]  Cd Length: 640  Bit Score: 41.21  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMSGQAEGEIGLLLhyQDGWLSGEVSDDGPGIPEnnIDAIFNKGFSTKGENRGVGLFLANQQLRELGGT 512
Cdd:COG4192  547 VLVNLLVNALDAVATQPQISVDLLS--NAENLRVAISDNGNGWPL--VDKLFTPFTTTKEVGLGLGLSICRSIMQQFGGD 622

                 ....*
gi 556282323 513 LAVES 517
Cdd:COG4192  623 LYLAS 627
envZ PRK09467
osmolarity sensor protein; Provisional
433-502 1.68e-03

osmolarity sensor protein; Provisional


Pssm-ID: 236531 [Multi-domain]  Cd Length: 435  Bit Score: 41.05  E-value: 1.68e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556282323 433 VLGNLIENALDAMSGQAEGEIGLLLHYqdGWLSgeVSDDGPGIPENNIDAIFnKGFsTKGE----NRGVGLFLA 502
Cdd:PRK09467 335 ALANLVVNAARYGNGWIKVSSGTEGKR--AWFQ--VEDDGPGIPPEQLKHLF-QPF-TRGDsargSSGTGLGLA 402
PRK10618 PRK10618
phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
467-530 1.78e-03

phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional


Pssm-ID: 236726 [Multi-domain]  Cd Length: 894  Bit Score: 41.07  E-value: 1.78e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 467 EVSDDGPGIPENNIDAIfNKGFSTK------GENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK10618 603 RILDTGAGVSIKELDNL-HFPFLNQtqgdryGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLK 671
PRK11466 PRK11466
hybrid sensory histidine kinase TorS; Provisional
467-530 2.06e-03

hybrid sensory histidine kinase TorS; Provisional


Pssm-ID: 236914 [Multi-domain]  Cd Length: 914  Bit Score: 41.04  E-value: 2.06e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556282323 467 EVSDDGPGIPENNIDAIFNKGFSTKGENRGVGLFLA-NQQLRE-LGGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK11466 596 EVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTiSSRLAQaMGGELSATSTPEVGSCFCLRLP 661
PAS COG2202
PAS domain [Signal transduction mechanisms];
227-329 2.42e-03

PAS domain [Signal transduction mechanisms];


Pssm-ID: 441804 [Multi-domain]  Cd Length: 258  Bit Score: 40.01  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 227 QAMLHALKEGVVAVDAHGEVNLINPAAREILFSGPDKTLAHTP-----------LLADLQTVLHSGEPMYDRELGCNGLL 295
Cdd:COG2202  140 RLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLldllhpedrerLLELLRRLLEGGRESYELELRLKDGD 219
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 556282323 296 LI-----SNTVPIRSQEAVVGAICTFRDKTEVSQLLQRL 329
Cdd:COG2202  220 GRwvwveASAVPLRDGGEVIGVLGIVRDITERKRAEEAL 258
PRK10841 PRK10841
two-component system sensor histidine kinase RcsC;
433-530 2.51e-03

two-component system sensor histidine kinase RcsC;


Pssm-ID: 182772 [Multi-domain]  Cd Length: 924  Bit Score: 40.73  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 433 VLGNLIENALDAMsgqAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNI----DAIFNKGFSTKGENRGVGLFLA-NQQLR 507
Cdd:PRK10841 566 VISNLLSNAIKFT---DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVvrlfDPFFQVGTGVQRNFQGTGLGLAiCEKLI 642
                         90       100
                 ....*....|....*....|....
gi 556282323 508 EL-GGTLAVESEPGVFTQFFVHLP 530
Cdd:PRK10841 643 NMmDGDISVDSEPGMGSQFTIRIP 666
HATPase_c_3 pfam13589
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents, additionally, ...
430-502 2.87e-03

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.


Pssm-ID: 433332 [Multi-domain]  Cd Length: 135  Bit Score: 38.08  E-value: 2.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323  430 LVTVLGNLIENALDAMSGQAEgeigLLLHYQDGWLSG-EVSDDGPGIPENNIDAIFNKGFSTK----GEN----RGVGLF 500
Cdd:pfam13589   1 LEGALAELIDNSIDADATNIK----IEVNKNRGGGTEiVIEDDGHGMSPEELINALRLATSAKeakrGSTdlgrYGIGLK 76

                  ..
gi 556282323  501 LA 502
Cdd:pfam13589  77 LA 78
HATPase_TopVIB-like cd16933
Histidine kinase-like ATPase domain of type IIB topoisomerase, Topo VI, subunit B; This family ...
430-495 3.28e-03

Histidine kinase-like ATPase domain of type IIB topoisomerase, Topo VI, subunit B; This family includes the histidine kinase-like ATPase (HATPase) domain of the B subunit of topoisomerase VI (Topo VIB). Topo VI is a heterotetrameric complex composed of two TopVIA and two TopVIB subunits and is categorized as a type II B DNA topoisomerase. It is found in archaea and also in plants. Type II enzymes cleave both strands of a DNA duplex and pass a second duplex through the resulting break in an ATP-dependent mechanism. DNA cleavage by Topo VI generates two-nucleotide 5'-protruding ends.


Pssm-ID: 340410 [Multi-domain]  Cd Length: 203  Bit Score: 38.87  E-value: 3.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556282323 430 LVTVLGNLIENALDAmsgqAEgEIGLL--LHYQ-----DGWLSGEVSDDGPGIPENNIDAIFNKGF-STKGENR 495
Cdd:cd16933   20 LYTTVRELVENSLDA----TE-EAGILpdIKVEieeigKDHYKVIVEDNGPGIPEEQIPKVFGKVLyGSKYHNK 88
HATPase_UhpB-NarQ-NarX-like cd16917
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ...
457-530 3.61e-03

Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli UhpB, NarQ and NarX, and Bacillus subtilis YdfH, YhcY and YfiJ; This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli UhpB, a HK of the UhpB-UhpA TCS, NarQ and NarX, HKs of the NarQ-NarP and NarX-NarL TCSs, respectively, and Bacillus YdfH, YhcY and YfiJ HKs, of the YdfH-YdfI, YhcY-YhcZ and YfiJ-YfiK TCSs, respectively. In addition, it includes Bacillus YxjM, ComP, LiaS and DesK, HKs of the YxjM-YxjML, ComP-ComA, LiaS-LiaR, DesR-DesK TCSs, respectively. Proteins having this HATPase domain have a histidine kinase dimerization and phosphoacceptor domain; some have accessory domains such as GAF, HAMP, PAS and MASE sensor domains.


Pssm-ID: 340394 [Multi-domain]  Cd Length: 87  Bit Score: 36.76  E-value: 3.61e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556282323 457 LHYQDGWLSGEVSDDGPGIPEnnidaifnkgfSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQFFVHLP 530
Cdd:cd16917   25 LSYTADELTLTVVDDGVGFDG-----------PAPPGGGGFGLLGMRERAELLGGTLTIGSRPGGGTRVTARLP 87
HATPase_PDK-like cd16929
Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain ...
453-530 3.61e-03

Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains; This family includes the histidine kinase-like ATPase (HATPase) domains of all four PDK isoforms (pyruvate dehydrogenase kinases 1-4) that have been described in mammals, and other PDKs including Saccharomyces Pkp1p and Pkp2p. PDKs and phosphatases tightly regulate the mitochondrial pyruvate dehydrogenase complex (PDC) by reversible phosphorylation. PDC catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA, connecting glycolysis and the TCA acid cycle. Also included in this family is mammalian branched-chain alpha-ketoacid dehydrogenase kinase (BDK), a mitochondrial protein kinase that phosphorylates a subunit of the branched-chain a-ketoacid dehydrogenase (BCKD) complex, which catalyzes the oxidative decarboxylation of branched-chain alpha-ketoacids derived from leucine, isoleucine, and valine, a rate-limiting step in the oxidative degradation of these branched-chain amino acids.


Pssm-ID: 340406 [Multi-domain]  Cd Length: 169  Bit Score: 38.48  E-value: 3.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323 453 IGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNKGFST-------------KGENR------GVGLFLANQQLRELGGTL 513
Cdd:cd16929   73 IKVTVAKGDEDLTIKISDRGGGIPREDLARLFSYMYSTapqpslddfsdliSGTQPsplagfGYGLPMSRLYAEYFGGDL 152
                         90
                 ....*....|....*..
gi 556282323 514 AVESEPGVFTQFFVHLP 530
Cdd:cd16929  153 DLQSMEGYGTDVYIYLK 169
PAS smart00091
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ...
224-288 4.05e-03

PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.


Pssm-ID: 214512  Cd Length: 67  Bit Score: 35.84  E-value: 4.05e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556282323   224 QQRQAMLHALKEGVVAVDAHGEVNLINPAAREILFSGPDKTLAHTplladLQTVLHSGEPMYDRE 288
Cdd:smart00091   1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKS-----LLELIHPEDRERVQE 60
dCache_1 pfam02743
Cache domain; Double cache domain 1 covers the last three strands from the membrane distal ...
56-182 5.78e-03

Cache domain; Double cache domain 1 covers the last three strands from the membrane distal PAS-like domain, the first two strands of the membrane proximal domain, and the connecting elements between the two domains. This domain when present in chemoreceptors recognize several signals such as proteinogenic amino acids, GABA, Histamine and polyamines, decanoic acid, Autoinducer-2, purine derivatives, quaternary amines, citrate and taurine, among others. When associated with histidine kinases, it recognizes C3/C4-dicarboxylic acids, Spermine, guanosine and Autoinducer-2 (Mantilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1 https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 460673 [Multi-domain]  Cd Length: 237  Bit Score: 38.47  E-value: 5.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556282323   56 ETALAVARTMADMPQVKRGLAAPPQQQIIQplAQAITRRNDLLYAI-VTDMHG--IRYSHPDSSIIGKPFIGHD-IQPTL 131
Cdd:pfam02743  27 DSLEEILELLASNPDLQDLLSAPAEEELAK--LESLLRSNPGISSIyLVDADGrvLASSDESPSYPGLDVSERPwYKEAL 104
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 556282323  132 QGKE-------NVAINHGVLAPALRVFTPVFNDQHQQIGVVVVGISLSKVDEQIANSR 182
Cdd:pfam02743 105 KGGGgiiwvfsSPYPSSESGEPVLTIARPIYDDDGEVIGVLVADLDLDTLQELLSQIK 162
PRK04184 PRK04184
DNA topoisomerase VI subunit B; Validated
430-486 9.44e-03

DNA topoisomerase VI subunit B; Validated


Pssm-ID: 235246 [Multi-domain]  Cd Length: 535  Bit Score: 38.72  E-value: 9.44e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556282323 430 LVTVLGNLIENALDAmsgqAEgEIGLL---------LHYQDGWLSGEVSDDGPGIPENNIDAIFNK 486
Cdd:PRK04184  37 LYTTVKELVDNSLDA----CE-EAGILpdikieikrVDEGKDHYRVTVEDNGPGIPPEEIPKVFGK 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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