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Conserved domains on  [gi|556299950|ref|WP_023292532|]
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MULTISPECIES: 1,2-phenylacetyl-CoA epoxidase subunit PaaC [Enterobacter]

Protein Classification

YdbO family protein( domain architecture ID 10007323)

YdbO family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YdbO COG3396
1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, ...
4-247 6.83e-112

1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 442623  Cd Length: 264  Bit Score: 322.14  E-value: 6.83e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   4 VTAYALRLGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGQG-DEDTLAFGRDERQFRNVLL 82
Cdd:COG3396   20 LIRYLLRLADDELILAQRLSEWCGRAPTLEEDIALANIAQDELGHARLLYTLAEELEGAGrDEDDLAYLRDEGEFRNSLL 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950  83 VEQPNGSFADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAIDSL 162
Cdd:COG3396  100 VEQPNGDWADTIARQFLFDAAAILLLEALARSSDAPLAAIAAKICKEESYHLRHGEEWVIRLGDGTEESRERMQAALDRL 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950 163 WRFTAELFDADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQRA 242
Cdd:COG3396  180 WPYTLELFGPDDVEEALAAAGIKVDNDELRQEWLATVVPVLEEAGLTVPDEPVARGGGRQGRHTEHLGYLLAEMQYLQRA 259

                 ....*
gi 556299950 243 YPGQQ 247
Cdd:COG3396  260 YPGAT 264
 
Name Accession Description Interval E-value
YdbO COG3396
1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, ...
4-247 6.83e-112

1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442623  Cd Length: 264  Bit Score: 322.14  E-value: 6.83e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   4 VTAYALRLGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGQG-DEDTLAFGRDERQFRNVLL 82
Cdd:COG3396   20 LIRYLLRLADDELILAQRLSEWCGRAPTLEEDIALANIAQDELGHARLLYTLAEELEGAGrDEDDLAYLRDEGEFRNSLL 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950  83 VEQPNGSFADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAIDSL 162
Cdd:COG3396  100 VEQPNGDWADTIARQFLFDAAAILLLEALARSSDAPLAAIAAKICKEESYHLRHGEEWVIRLGDGTEESRERMQAALDRL 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950 163 WRFTAELFDADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQRA 242
Cdd:COG3396  180 WPYTLELFGPDDVEEALAAAGIKVDNDELRQEWLATVVPVLEEAGLTVPDEPVARGGGRQGRHTEHLGYLLAEMQYLQRA 259

                 ....*
gi 556299950 243 YPGQQ 247
Cdd:COG3396  260 YPGAT 264
PA_CoA_Oxy3 TIGR02158
phenylacetate-CoA oxygenase, PaaI subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
11-248 4.18e-110

phenylacetate-CoA oxygenase, PaaI subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 131213  Cd Length: 237  Bit Score: 316.75  E-value: 4.18e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   11 LGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGqGDEDTLAFGRDERQFRNVLLVEQPNGSF 90
Cdd:TIGR02158   1 LGDDALVLAQRGGEWCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGG-GDEDTLAFFRDEAEFRNLRLTELPNGDF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   91 ADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAIDSLWRFTAELF 170
Cdd:TIGR02158  80 ALTIARQFLYDAYKVLLLEALTQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWPYTAELF 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556299950  171 DADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQRAYPGQQW 248
Cdd:TIGR02158 160 EAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTLPQQTFYRSNGRNGEHTEHLGPLLAEMQELQRSHPGAQW 237
PaaA_PaaC pfam05138
Phenylacetic acid catabolic protein; This family includes proteins such as PaaA and PaaC that ...
2-248 1.91e-107

Phenylacetic acid catabolic protein; This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.


Pssm-ID: 428329  Cd Length: 251  Bit Score: 310.27  E-value: 1.91e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950    2 NSVTAYALRLGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGQG-DEDTLAFGRDERQFRNV 80
Cdd:pfam05138   4 RALIRYLLQLADSELILAQRLSEWCGRAPSLEEDIALANIAQDEIGHARLLYRYAEELEGEGrDEDDLAYLRDEGEFKNS 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   81 LLVEQPNGSFADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAID 160
Cdd:pfam05138  84 LLFEQPNGDWADTGVRQFLVDGAAILLQEALCRSSYGPLAAAAAKICKEESYHLRHGAEWVIRLGDGTEESHRRMQEALD 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950  161 SLWRFTAELFDADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQ 240
Cdd:pfam05138 164 RLWPYTLEMFGPDDDDQALAAAGKAVDNDELRQAWLATVVPVLEEAGLTLPDSPWLRYGGRQGRHTEHLGYLLAEMQYLQ 243

                  ....*...
gi 556299950  241 RAYPGQQW 248
Cdd:pfam05138 244 RAYPGAAW 251
 
Name Accession Description Interval E-value
YdbO COG3396
1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, ...
4-247 6.83e-112

1,2-phenylacetyl-CoA epoxidase, catalytic subunit [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442623  Cd Length: 264  Bit Score: 322.14  E-value: 6.83e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   4 VTAYALRLGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGQG-DEDTLAFGRDERQFRNVLL 82
Cdd:COG3396   20 LIRYLLRLADDELILAQRLSEWCGRAPTLEEDIALANIAQDELGHARLLYTLAEELEGAGrDEDDLAYLRDEGEFRNSLL 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950  83 VEQPNGSFADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAIDSL 162
Cdd:COG3396  100 VEQPNGDWADTIARQFLFDAAAILLLEALARSSDAPLAAIAAKICKEESYHLRHGEEWVIRLGDGTEESRERMQAALDRL 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950 163 WRFTAELFDADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQRA 242
Cdd:COG3396  180 WPYTLELFGPDDVEEALAAAGIKVDNDELRQEWLATVVPVLEEAGLTVPDEPVARGGGRQGRHTEHLGYLLAEMQYLQRA 259

                 ....*
gi 556299950 243 YPGQQ 247
Cdd:COG3396  260 YPGAT 264
PA_CoA_Oxy3 TIGR02158
phenylacetate-CoA oxygenase, PaaI subunit; Phenylacetate-CoA oxygenase is comprised of a five ...
11-248 4.18e-110

phenylacetate-CoA oxygenase, PaaI subunit; Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other]


Pssm-ID: 131213  Cd Length: 237  Bit Score: 316.75  E-value: 4.18e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   11 LGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGqGDEDTLAFGRDERQFRNVLLVEQPNGSF 90
Cdd:TIGR02158   1 LGDDALVLAQRGGEWCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGG-GDEDTLAFFRDEAEFRNLRLTELPNGDF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   91 ADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAIDSLWRFTAELF 170
Cdd:TIGR02158  80 ALTIARQFLYDAYKVLLLEALTQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWPYTAELF 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556299950  171 DADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQRAYPGQQW 248
Cdd:TIGR02158 160 EAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTLPQQTFYRSNGRNGEHTEHLGPLLAEMQELQRSHPGAQW 237
PaaA_PaaC pfam05138
Phenylacetic acid catabolic protein; This family includes proteins such as PaaA and PaaC that ...
2-248 1.91e-107

Phenylacetic acid catabolic protein; This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.


Pssm-ID: 428329  Cd Length: 251  Bit Score: 310.27  E-value: 1.91e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950    2 NSVTAYALRLGDNGLVLSQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLTYAAEREGQG-DEDTLAFGRDERQFRNV 80
Cdd:pfam05138   4 RALIRYLLQLADSELILAQRLSEWCGRAPSLEEDIALANIAQDEIGHARLLYRYAEELEGEGrDEDDLAYLRDEGEFKNS 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950   81 LLVEQPNGSFADTLARQYLMDAWNVALYERLTQSRDGQLAAIAAKAIKEARYHLRFSRGWLVRLGDGTETSAQKMQQAID 160
Cdd:pfam05138  84 LLFEQPNGDWADTGVRQFLVDGAAILLQEALCRSSYGPLAAAAAKICKEESYHLRHGAEWVIRLGDGTEESHRRMQEALD 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556299950  161 SLWRFTAELFDADEVELELIESGVAVDPRLLRQPWESEVYAGLNEACLQVPAEVAYRTGGKQGLHTEHLGPMLAEMQYLQ 240
Cdd:pfam05138 164 RLWPYTLEMFGPDDDDQALAAAGKAVDNDELRQAWLATVVPVLEEAGLTLPDSPWLRYGGRQGRHTEHLGYLLAEMQYLQ 243

                  ....*...
gi 556299950  241 RAYPGQQW 248
Cdd:pfam05138 244 RAYPGAAW 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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