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Conserved domains on  [gi|556347868|ref|WP_023298405|]
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MULTISPECIES: OmpA family protein [Enterobacter]

Protein Classification

PRK09967 family protein( domain architecture ID 11484538)

PRK09967 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.67e-119

OmpA family protein;


:

Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 332.71  E-value: 3.67e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   1 MLKRYFAPLLLASLVMSGCQTPEGKFTPEQIAAMKSYGFNELNGDWSLGLSDKILFDKNDARLRPESETQIQTMASRLAA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  81 TGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAKGANIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.67e-119

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 332.71  E-value: 3.67e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   1 MLKRYFAPLLLASLVMSGCQTPEGKFTPEQIAAMKSYGFNELNGDWSLGLSDKILFDKNDARLRPESETQIQTMASRLAA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  81 TGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAKGANIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 8.49e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 112.26  E-value: 8.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  54 ILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNYGEESYNEALSLKRANVVADA-WAKGanIPRSNLTTRGL 132
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVGY 81

                         90       100
                 ....*....|....*....|....*
gi 556347868 133 GKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:cd07185   82 GESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-160 6.82e-31

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 112.95  E-value: 6.82e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  50 LSDKILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAKgANIPRSNLTT 129
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 556347868 130 RGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 56-150 3.06e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 69.70  E-value: 3.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   56 FDKNDARLRPESETQIQTMASRLAATGLNHA-RMDGHTDNYGEESYNEALSLKRANVVADA-WAKGanIPRSNLTTRGLG 133
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 556347868  134 KKYPLSSNRTAQGRAEN 150
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 55-157 1.28e-14

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 66.56  E-value: 1.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   55 LFDKNDARLRPESETQIQTMASRLAATGLNhARMDGHTDNYGEESY----NEALSLKRANVVADAWAKGAnIPRSNLTTR 130
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAGRVRAE 110

                          90       100
                  ....*....|....*....|....*..
gi 556347868  131 GLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:TIGR03350 111 GRGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
PRK09967 PRK09967
OmpA family protein;
1-160 3.67e-119

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 332.71  E-value: 3.67e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   1 MLKRYFAPLLLASLVMSGCQTPEGKFTPEQIAAMKSYGFNELNGDWSLGLSDKILFDKNDARLRPESETQIQTMASRLAA 80
Cdd:PRK09967   1 MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  81 TGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAKGANIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:PRK09967  81 TGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP 160
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 8.49e-33

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 112.26  E-value: 8.49e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  54 ILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNYGEESYNEALSLKRANVVADA-WAKGanIPRSNLTTRGL 132
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYlVSKG--VDASRITAVGY 81

                         90       100
                 ....*....|....*....|....*
gi 556347868 133 GKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:cd07185   82 GESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 50-160 6.82e-31

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 112.95  E-value: 6.82e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  50 LSDKILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAKgANIPRSNLTT 129
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVS-KGIPASRITA 263

                         90       100       110
                 ....*....|....*....|....*....|.
gi 556347868 130 RGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:COG2885  264 VGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
41-159 2.05e-19

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 79.89  E-value: 2.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  41 ELNGDW-SLGLSDKILFDKNDARLRPESETQIQTMASRLAATGlNHARMDGHTDN--YGEESY--NEALSLKRANVVADA 115
Cdd:COG1360   47 RITEEGlVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNvpISTARFpsNWELSAARAAAVVRY 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 556347868 116 WAKGaNIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVIST 159
Cdd:COG1360  126 LIEG-GVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 56-150 3.06e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 69.70  E-value: 3.06e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   56 FDKNDARLRPESETQIQTMASRLAATGLNHA-RMDGHTDNYGEESYNEALSLKRANVVADA-WAKGanIPRSNLTTRGLG 133
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTiTIEGHTDTVGSAAYNWELSQRRAEAVRRYlVNFG--VPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 556347868  134 KKYPLSSNRTAQGRAEN 150
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 55-157 1.28e-14

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 66.56  E-value: 1.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868   55 LFDKNDARLRPESETQIQTMASRLAATGLNhARMDGHTDNYGEESY----NEALSLKRANVVADAWAKGAnIPRSNLTTR 130
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAG-GPAGRVRAE 110

                          90       100
                  ....*....|....*....|....*..
gi 556347868  131 GLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:TIGR03350 111 GRGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
48-158 1.04e-12

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 62.97  E-value: 1.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  48 LGLSDKILFDKNDARLRPESETQIQTMASRLAATGLNHARMDGHTDNYGEESYNEALSLKRANVVADAWAkGANIPRSNL 127
Cdd:PRK10510 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALI-TQGVDASRI 186

                         90       100       110
                 ....*....|....*....|....*....|.
gi 556347868 128 TTRGLGKKYPLSSNRTAQGRAENRRVAVVIS 158
Cdd:PRK10510 187 RTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 50-158 3.10e-12

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 62.34  E-value: 3.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  50 LSDKILFDKNDARLRPESETQIQTMASRLAATGlNHARMDGHTDNYGEESY----NEALSLKRANVVADAWAkGANIPRS 125
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDNVPIATAqfpsNWELSAARAASVVRLLA-DDGVAPS 208

                         90       100       110
                 ....*....|....*....|....*....|...
gi 556347868 126 NLTTRGLGKKYPLSSNRTAQGRAENRRVAVVIS 158
Cdd:PRK09038 209 RLAAVGYGEFQPVADNDTAEGRARNRRVVLVIL 241
PRK10808 PRK10808
outer membrane protein A; Reviewed
 50-155 1.46e-11

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 60.86  E-value: 1.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  50 LSDKILFDKNDARLRPESETQIQTMASRLAAtglnharMD---------GHTDNYGEESYNEALSLKRANVVADAW-AKG 119
Cdd:PRK10808 222 LKSDVLFNFNKATLKPEGQQALDQLYSQLSN-------LDpkdgsvvvlGYTDRIGSDAYNQGLSEKRAQSVVDYLvSKG 294

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 556347868 120 anIPRSNLTTRGLGKKYPLSSNR--TAQGRAE-------NRRVAV 155
Cdd:PRK10808 295 --IPADKISARGMGKSNPVTGNTcdNVKPRAAlidclapDRRVEI 337
PRK08126 PRK08126
hypothetical protein; Provisional
 55-157 8.77e-11

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 58.94  E-value: 8.77e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  55 LFDKNDARLRPESETQIQTMASRLAATGlNHARMDGHTDNY----GEESYNEALSLKRANVVADAwAKGANIPRSNLTTR 130
Cdd:PRK08126 326 MFVPGQATVNPAMGPLIAKIAREIARVG-GKVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQM-LQSAGVPASRLEAV 403

                         90       100
                 ....*....|....*....|....*..
gi 556347868 131 GLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:PRK08126 404 GKGDAQPVADNRTPQGRAQNRRVEITV 430
PRK06925 PRK06925
flagellar motor protein MotB;
48-160 5.81e-10

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 55.93  E-value: 5.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  48 LGLSDKILFDKNDARLRPESETQIQTMAsRLAATGLNHARMDGHTDNYGEESY----NEALSLKRANVVADAWAKGANIP 123
Cdd:PRK06925 114 LVLQEAVLFETGEADILKQAEPFLHKIG-VLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKEKLD 192

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 556347868 124 RSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVISTP 160
Cdd:PRK06925 193 SSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
motB PRK07734
flagellar motor protein MotB; Reviewed
 52-157 7.64e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 55.52  E-value: 7.64e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  52 DKILFDKNDARLRPESETQIQTMASRLAatgLNHAR---MDGHTDNY----GEESYNEALSLKRANVVADAWAKGANIPR 124
Cdd:PRK07734 142 DNILFDSGKADVRLEDLPLAKEISNLLV---SNPPRnitISGHTDNVpianAQFASNWELSVMRAVNFMQVLLENKELDP 218

                         90       100       110
                 ....*....|....*....|....*....|...
gi 556347868 125 SNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:PRK07734 219 EKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLI 251
PRK09040 PRK09040
hypothetical protein; Provisional
 48-153 1.27e-08

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 51.94  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  48 LGLSDKILFDKNDARLRPESETQIQTMASRLAATGLNHARM---DGHTDNY----GEESY--NEALSLKRANVVADAWAK 118
Cdd:PRK09040  84 IGISGSVLFALNSDQLQPEGRELLKSLAGPLAAYLRARDEIlmvSGFTDDQpvraGNRRFadNWELSAQRALTVTRALID 163

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 556347868 119 gANIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRV 153
Cdd:PRK09040 164 -AGVPASSVFAAAFGSEQPVASNADDEGRAKNRRV 197
PRK09039 PRK09039
peptidoglycan -binding protein;
54-153 3.50e-07

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 48.42  E-value: 3.50e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  54 ILFDKNDARLRPESETQIqtmaSRLAATGLNHA-----------RMDGHTDN---YGEESY--NEALSLKRA-NVVADAW 116
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEI----AKLAAALIELAkeippeinwvlRVDGHTDNvplSGTGRFrdNWELSSARAiSVVKFLI 301

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 556347868 117 AKGanIPRSNLTTRGLGKKYPLSSNRTAQGRAENRRV 153
Cdd:PRK09039 302 ALG--VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
PRK07033 PRK07033
DotU family type VI secretion system protein;
55-157 6.22e-07

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 47.74  E-value: 6.22e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  55 LFDKNDARLRPESETQIQTMASRLAATGLNhARMDGHTDNYGEESY----NEALSLKRANVVADAWAKGANIPrSNLTTR 130
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQP-ERVTAE 394

                         90       100
                 ....*....|....*....|....*..
gi 556347868 131 GLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:PRK07033 395 GRGDSDPVAPNDSAENRARNRRVEITL 421
motB PRK06667
flagellar motor protein MotB; Validated
 56-159 3.39e-06

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 45.17  E-value: 3.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  56 FDKNDARLR-PESETQIQTMASRLAatGLNHA----RMDGHTDNY-----GEESYNEALSLKRANVVADAWAKGANIPRS 125
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIG--FLDLAgrnfRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSES 206

                         90       100       110
                 ....*....|....*....|....*....|....
gi 556347868 126 NLTTRGLGKKYPLSSNRTAQGRAENRRVAVVIST 159
Cdd:PRK06667 207 WFQVSGFAGSRPLATEDTPEGRAYNRRIDIVILT 240
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 47-157 1.10e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 43.90  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  47 SLGLSDKILFDKNDARLRPESETQIQTMASRLAATGlNHARMDGHTDN--YGEESY--NEALSLKRANVVADAWAKGANI 122
Cdd:PRK06742 110 SVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVP-NPIVVEGHTDSrpIHNDKFpsNWELSSARAANMIHHLIEVYNV 188

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 556347868 123 PRSNLTTRGLGKKYPLSSNRTAQGRAENRRVAVVI 157
Cdd:PRK06742 189 DDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK07034 PRK07034
hypothetical protein; Provisional
 90-156 4.40e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 42.47  E-value: 4.40e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556347868  90 GHTDNYGEESY----NEALSLKRANVVADAWAKGANIPRSN---LTTRGLGKKYPLSSNRTAQGRAENRRVAVV 156
Cdd:PRK07034 433 GHTDNKPFRSTsgnnNLKLSAARASVVADKLRESTQINETHqreISAIGRGESDPLADNATEEGRKRNRRVDIL 506
PRK14693 PRK14693
hypothetical protein; Provisional
 46-156 4.03e-04

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 39.75  E-value: 4.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556347868  46 WSLGLSDKILFDKNDARLRPESETQIQTMASRLAATGlNHARMDGHTDN----YGEESYNEALSLKRANVVAD-----AW 116
Cdd:PRK14693 366 WLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWP-GDLEVIGHTDSrpirTSEFPDNQALSEARARNVADelrktAL 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 556347868 117 AKGANIPRS----NLTTRGLGKKYPLSSNRTAQGRAENRRVAVV 156
Cdd:PRK14693 445 PGGARAPENavqrNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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