|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
1-513 |
0e+00 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 1097.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMPSEREHR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 81 ALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLDSNPQNTHSEHVVINGQNFLME 160
Cdd:PRK10820 81 ALSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQDFLME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 161 ITPVYLKGENAARVLTGAVIMLRSTVRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGK 240
Cdd:PRK10820 161 ITPVYLQDENDQHVLVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 241 DLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:PRK10820 241 DLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPgaypnalEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQG 393
Cdd:PRK10820 321 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 394 VPRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:PRK10820 401 VPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAA-VAVGEDAMEGSLDEITSRFERSVL 479
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 556413153 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLNQKKGDE 513
Cdd:PRK10820 480 TRLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQKKGEE 519
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
1-508 |
0e+00 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 949.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMPSEREHL 80
Cdd:COG3283 1 MRLEVTCEDRLGITRELLDLLVERNIDLRGIEIDPSGRIYLNFPELDFEQFQHLMPEIRRIPGVTDVRTVPFMPSEREHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 81 ALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLDSNPQNTHSEHVVINGQNFLME 160
Cdd:COG3283 81 ELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLSELLKGFNFSRWLESNEPRPQSERVVINGQDYLAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 161 ITPVYLKGENAARVLTGAVIMLRSTVRMGRQLQNLSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGK 240
Cdd:COG3283 161 ILPIYLPDEEGKSILAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 241 DLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAP-------EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLR 313
Cdd:COG3283 241 ELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPgafgnarEGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 314 FLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQG 393
Cdd:COG3283 321 FLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 394 VPRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQDILLPDYDAGtVSVGEEAMEGSLDDITSRFERSVL 473
Cdd:COG3283 401 RPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQLPEYAAS-AGLLDDLLEGSLDEIVKRFERSLL 479
|
490 500 510
....*....|....*....|....*....|....*
gi 556413153 474 TQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLNQ 508
Cdd:COG3283 480 RRLYPSYPSTRKLAKRLGVSHTAIANKLREYGIGK 514
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
82-507 |
2.80e-149 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 434.58 E-value: 2.80e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 82 LSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLDS-NPQNTHSEHVVINGQNFLME 160
Cdd:COG3829 13 LEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELIPNSPLLEVLKTgKPVTGVIQKTGGKGKTVIVT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 161 ITPVYLKGEnaarvLTGAVIMLRSTVRMGRQLQNLSSQDVG-------AFSQIIAVSPKMRHVLDQARKLANLTAPLLIT 233
Cdd:COG3829 93 AIPIFEDGE-----VIGAVETFRDITELKRLERKLREEELErglsakyTFDDIIGKSPAMKELLELAKRVAKSDSTVLIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 234 GDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSP 305
Cdd:COG3829 168 GESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKgaftgakkGGKPGLFELADGGTLFLDEIGEMPL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 306 RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFV 385
Cdd:COG3829 248 SLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 386 ARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQDilLPDYDAGTVSVGEEAMEGSLDDIT 465
Cdd:COG3829 328 EKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEH--LPEYLLEEAEAASAAEEGSLKEAL 405
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 556413153 466 SRFERSVLTQLYRSYPSTR-KLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3829 406 EEVEKELIEEALEKTGGNKsKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
182-505 |
5.70e-108 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 328.08 E-value: 5.70e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 182 LRSTVRMGRQLQNLSsQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLAL 261
Cdd:COG2204 110 LLAAVERALERRRLR-RENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAV 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 262 NCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR 334
Cdd:COG2204 189 NCAAIPEELLESELFGHekgaftgAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVR 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 335 VICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPrPKLSADLGTVLTRYGWPG 414
Cdd:COG2204 269 VIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKP-VKLSPEALEALLAYDWPG 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 415 NIRQLKNAVYRALTQLEGYELRHQDIllpdydagtvsvgEEAMEgsldditsRFERS-VLTQLYRSYPSTRKLAKRLGVS 493
Cdd:COG2204 348 NVRELENVIERAVILADGEVITAEDL-------------PEALE--------EVERElIERALEETGGNVSRAAELLGIS 406
|
330
....*....|..
gi 556413153 494 HTAIANKLREYG 505
Cdd:COG2204 407 RRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
77-505 |
1.22e-106 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 331.09 E-value: 1.22e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 77 REHlALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPgfnfqrwldsnpqnTHSEHVVINGQN 156
Cdd:COG3284 214 RLH-FLPEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLEELFG--------------LDLEALPDGARR 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 157 FLMEITPVYLKGENAArvltGAVIMLRSTVRMGRQlQNLSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDT 236
Cdd:COG3284 279 APASPRPLRLRDGRRL----GALLRLRPARRAARA-APAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGET 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 237 GTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAP--------EGKKGFFEQANGGSVLLDEIGEMSPRMQ 308
Cdd:COG3284 354 GTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPgaftgarrKGRPGKIEQADGGTLFLDEIGDMPLALQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 309 AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDcPQDIMPLTELFVARF 388
Cdd:COG3284 434 ARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRE-REDLPALIEHLLREL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 389 ADEQGVPRpkLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQDilLPDY---DAGTVSVGEEAMEGSLDDIt 465
Cdd:COG3284 513 AAGRGPLR--LSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVED--LPDElraELAAAAPAAAAPLTSLEEA- 587
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 556413153 466 srfERSVLTQLYRsypSTR----KLAKRLGVSHTAIANKLREYG 505
Cdd:COG3284 588 ---ERDAILRALR---ACGgnvsAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
206-365 |
1.15e-86 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 263.88 E-value: 1.15e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 206 IIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHekgaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYY 358
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 556413153 359 RLNVLTL 365
Cdd:pfam00158 161 RLNVIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
187-432 |
2.25e-82 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 265.43 E-value: 2.25e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 187 RMGRQLQNLSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASI 266
Cdd:TIGR01817 179 QLRDKAPEIARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 267 PEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 339
Cdd:TIGR01817 259 SETLLESELFGHekgaftgAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 340 QKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGvpRP-KLSADLGTVLTRYGWPGNIRQ 418
Cdd:TIGR01817 339 NRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG--RPlTITPSAIRVLMSCKWPGNVRE 416
|
250
....*....|....
gi 556413153 419 LKNAVYRALTQLEG 432
Cdd:TIGR01817 417 LENCLERTATLSRS 430
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
149-423 |
1.37e-81 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 264.45 E-value: 1.37e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 149 HVVINGQnflmeitPVYLKGEnaarvLTGAVimlrSTVRMGRQLQNLSSQ------------------DVGAFSQIIAVS 210
Cdd:NF041552 210 YVIISAV-------PIFINGE-----FIGVV----STDRDITEVKNLSKElekakekleyleeevkkiSEDSFGKIIGKS 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 211 PKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAkPYLALNCASIPEDAVESELFGHAP--------EG 282
Cdd:NF041552 274 KKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEgaftgalkKG 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 283 KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNV 362
Cdd:NF041552 353 KIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNV 432
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556413153 363 LTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNAV 423
Cdd:NF041552 433 VEIELPPLRERKEDIPLLINYFLKEICKENNKEIPKIDKEVYDILQNYKWKGNIRELKNTI 493
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
182-507 |
3.91e-81 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 260.17 E-value: 3.91e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 182 LRSTVRMGRQLQNLSsQDVGAFSQ----------IIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMAS 251
Cdd:PRK11361 112 LNLIVQRALQLQSMK-KEIRHLHQalstswqwghILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 252 PRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324
Cdd:PRK11361 191 RRAKGPFIKVNCAALPESLLESELFGHekgaftgAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIG 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 325 EDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLG 404
Cdd:PRK11361 271 GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 405 TVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQDilLPD---YDAGTVSVGEEAMEG--SLDDITSRFERSVLTQ-LYR 478
Cdd:PRK11361 351 SLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSED--LPPqirQPVCNAGEVKTAPVGerNLKEEIKRVEKRIIMEvLEQ 428
|
330 340
....*....|....*....|....*....
gi 556413153 479 SYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:PRK11361 429 QEGNRTRTALMLGISRRALMYKLQEYGID 457
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
203-506 |
1.28e-80 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 260.58 E-value: 1.28e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 203 FSQIIAVSPKMRHVLDQARKLA-NLTAPLLITGDTGTGKDLLAHAVHMASPRA---AKPYLALNCASIPEDAVESELFGH 278
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVAlRSRAPILLTGPTGAGKSFLARRIYELKKRRhqvSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 279 -------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGV 351
Cdd:NF038308 258 vkgaftgAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 352 FREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKlSADLGT------VLTRYGWPGNIRQLKNAVYR 425
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARELGRQVRF-NKEARFrylafaTSPEALWPGNFRELSASVTR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 426 ALT--------------QLEGYELRHQDILLPDYDAGTVSVGEEAMEGSLDditsRFERSVLTQLY---RSYPSTRKLAK 488
Cdd:NF038308 417 MATladggriteelveeEIARLRAAWQSAPAAADDDALADLLGGEQLAELD----LFDRVQLAAVLrvcRQSRSLSAAGR 492
|
330 340
....*....|....*....|....
gi 556413153 489 RL-GVSHTAIAN-----KLREYGL 506
Cdd:NF038308 493 RLfGVSRQQKASpndadRLRKYLA 516
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
182-494 |
2.00e-78 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 254.33 E-value: 2.00e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 182 LRSTVRMgRQL--QNLSSQDVGAF--------SQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMAS 251
Cdd:PRK05022 156 LRNALLI-EQLesQAELPQDVAEFlrqealkeGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 252 PRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVG 324
Cdd:PRK05022 235 PRADKPLVYLNCAALPESLAESELFGHvkgaftgAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVG 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 325 EDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLG 404
Cdd:PRK05022 315 SDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 405 TVLTRYGWPGNIRQLKNAVYR----ALTQLEGYEL----RHQDILLPDYDAG--TVSVGEEAMEGSLDDITSRFERSVLT 474
Cdd:PRK05022 395 AALLAYDWPGNVRELEHVISRaallARARGAGRIVtleaQHLDLPAEVALPPpeAAAAPAAVVSQNLREATEAFQRQLIR 474
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 556413153 475 Q----------------------LYRsypstrkLAKRLGVSH 494
Cdd:PRK05022 475 QalaqhqgnwaaaaraleldranLHR-------LAKRLGLKD 509
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
190-506 |
9.09e-77 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 248.12 E-value: 9.09e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 190 RQLQnlSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPED 269
Cdd:TIGR02915 127 RRLQ--SALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 270 AVESELFGHapegKKGFF-----------EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338
Cdd:TIGR02915 205 LLESELFGY----EKGAFtgavkqtlgkiEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 339 TQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQ 418
Cdd:TIGR02915 281 TNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 419 LKNAVYRALTQLEGYELRHQDILLPDydagtVSVGEEAMEGSLDDITSRFERSVLTQLY-RSYPSTRKLAKRLGVSHTAI 497
Cdd:TIGR02915 361 LENKVKRAVIMAEGNQITAEDLGLDA-----RERAETPLEVNLREVRERAEREAVRKAIaRVDGNIARAAELLGITRPTL 435
|
....*....
gi 556413153 498 ANKLREYGL 506
Cdd:TIGR02915 436 YDLMKKHGI 444
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
191-506 |
1.52e-74 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 243.24 E-value: 1.52e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 191 QLQNLSSQDVGAFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDA 270
Cdd:PRK10923 125 QQQPRNIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 271 VESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343
Cdd:PRK10923 205 IESELFGHekgaftgANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 344 VELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNaV 423
Cdd:PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLEN-T 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 424 YRALTQL-EGYELRHQDI---------------LLPDYDAGTVS-----VGEEAMEGSLDDITSRFERSVLTQLYRSYPS 482
Cdd:PRK10923 364 CRWLTVMaAGQEVLIQDLpgelfestvpestsqMQPDSWATLLAqwadrALRSGHQNLLSEAQPELERTLLTTALRHTQG 443
|
330 340
....*....|....*....|....*
gi 556413153 483 TRKLAKR-LGVSHTAIANKLREYGL 506
Cdd:PRK10923 444 HKQEAARlLGWGRNTLTRKLKELGM 468
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
206-504 |
3.00e-69 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 224.87 E-value: 3.00e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 206 IIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHeagaftg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYY 358
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 359 RLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPR-PKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQ--LEGYEL 435
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLfPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRhgLEEAPI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 436 RHQDI-------------------LLPDYDAGTVSVGEEAMEGSLDDITSRFERSVLTQ-LYRSYPSTRKLAKRLGVSHT 495
Cdd:TIGR02974 241 DEIIIdpfaspwrpkqaapavdevNSTPTDLPSPSSIAAAFPLDLKQAQQDYEIELLQQaLAEAQFNQRKAAELLGLTYH 320
|
....*....
gi 556413153 496 AIANKLREY 504
Cdd:TIGR02974 321 QLRGLLRKH 329
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
206-501 |
9.86e-67 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 221.83 E-value: 9.86e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 206 IIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGH------- 278
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHekgaftg 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 279 APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYY 358
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 359 RLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGYELRHQ 438
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISER 380
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556413153 439 DilLPDYDAGTVSVGEEAMEgsLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKL 501
Cdd:PRK10365 381 E--LPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
205-428 |
2.94e-62 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 210.08 E-value: 2.94e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 205 QIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAP---- 280
Cdd:PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARgaft 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 281 ---EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLY 357
Cdd:PRK15115 215 gavSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLY 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556413153 358 YRLNVLTLNIPPLRDCPQDImPLTELFVARFADEQGVPRPK-LSADLGTVLTRYGWPGNIRQLKNAVYR--ALT 428
Cdd:PRK15115 295 YRLNVVSLKIPALAERTEDI-PLLANHLLRQAAERHKPFVRaFSTDAMKRLMTASWPGNVRQLVNVIEQcvALT 367
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
206-501 |
7.42e-61 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 208.56 E-value: 7.42e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 206 IIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAPE---- 281
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGaftg 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 282 ----GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLY 357
Cdd:TIGR02329 294 arrgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 358 YRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVP----RPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGY 433
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPdseaAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAM 453
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556413153 434 ElrhQDILLPDY-DAGTVSVGEEAMEGSLDDITSRfERSVLTQLyrsypSTRKLAKRLGVSHTAIANKL 501
Cdd:TIGR02329 454 P---AGALTPDVlRALAPELAEASGKGKTSALSLR-ERSRVEAL-----AVRAALERFGGDRDAAAKAL 513
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
194-507 |
1.43e-60 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 202.39 E-value: 1.43e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 194 NLSSQDVGAFSQIIavspkmrhvLDQARKLANLTApLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVES 273
Cdd:COG3604 92 TLDSRRPGAFSEED---------LRLLETLASLAA-VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 274 elfghapegkkgffeqanggsvlldeigemsprmqakllrfLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFR 353
Cdd:COG3604 162 -----------------------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 354 EDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEGY 433
Cdd:COG3604 201 EDLYYRLNVFPIRLPPLRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGG 280
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556413153 434 ELRHQDIllpdydagtVSVGEEAMEgsldditsRFERSVLTQ-LYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:COG3604 281 VLDADDL---------APGSREALE--------EVEREHILEaLERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
216-427 |
1.15e-57 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 194.50 E-value: 1.15e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 216 VLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFE 288
Cdd:PRK11608 18 VLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHeagaftgAQKRHPGRFE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 289 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIP 368
Cdd:PRK11608 98 RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 369 PLRDCPQDIMPLTELFVARFADEQGVPR-PKLSADLGTVLTRYGWPGNIRQLKNAVYRAL 427
Cdd:PRK11608 178 PLRERQSDIMLMAEHFAIQMCRELGLPLfPGFTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
210-425 |
2.54e-57 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 199.56 E-value: 2.54e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 210 SPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASP--------RAAKPYLALNCASIPEDAVESELFGHAPE 281
Cdd:PRK15424 225 SPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAELFGYEEG 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 282 --------GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFR 353
Cdd:PRK15424 305 aftgsrrgGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFR 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556413153 354 EDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVP-RPKLSADLGT---VLTRYGWPGNIRQLKNAVYR 425
Cdd:PRK15424 385 RDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPfSAALRQGLQQcetLLLHYDWPGNVRELRNLMER 460
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
53-512 |
2.61e-55 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 196.05 E-value: 2.61e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 53 SLMAEIRRiagvtdvrtipwmpsereHL-ALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQfipG 131
Cdd:PRK11388 193 SLLAESNR------------------HLnQLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITE---L 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 132 FNFqrwldsnPQNTHseHVVINGQNFLMEITPVYLKGEnaarvLTGAVIMLRSTVRMGR-----------QLQNLSSQDV 200
Cdd:PRK11388 252 LTL-------PAVLQ--QAIKQAHPLKHVEVTFESQGQ-----FIDAVITLKPIIEGQGtsfilllhpveQMRQLMTSQL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 201 G----AFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELF 276
Cdd:PRK11388 318 GkvshTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 277 GHAP----EGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVF 352
Cdd:PRK11388 398 GSDRtdseNGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRF 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 353 REDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVpRPKLSADLGTVLTRYGWPGNIRQLKNAVYRALTQLEG 432
Cdd:PRK11388 478 SRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFST-RLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 433 YELRHQDilLPDYDAGTVSVGEEAMEGSLDDIT-SRFERSVLTQLYR-SYPSTRKLAKRLGVSHTAIANKLREYGL--NQ 508
Cdd:PRK11388 557 GRIRLSD--LPEHLFTEQATDDVSATRLSTSLSlAELEKEAIINAAQvCGGRIQEMAALLGIGRTTLWRKMKQHGIdaGQ 634
|
....
gi 556413153 509 KKGD 512
Cdd:PRK11388 635 FKRR 638
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
191-508 |
2.73e-55 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 196.59 E-value: 2.73e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 191 QLQNLSSQdvgaFSQIIAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDA 270
Cdd:PRK15429 367 QLNNVDSE----FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 271 VESELFGH-------APEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNL 343
Cdd:PRK15429 443 LESDLFGHergaftgASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 344 VELVQKGVFREDLYYRLNVLTLNIPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLGTVLTRYGWPGNIRQLKNAV 423
Cdd:PRK15429 523 KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVI 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 424 YRA--LTQLEGYELRHQDILLPDYDAGTVSVgEEAMEGslDDITSRFERsVLTQLYRSYPSTRKLAKRLGVSHTAIANKL 501
Cdd:PRK15429 603 ERAvlLTRGNVLQLSLPDITLPEPETPPAAT-VVAQEG--EDEYQLIVR-VLKETNGVVAGPKGAAQRLGLKRTTLLSRM 678
|
....*..
gi 556413153 502 REYGLNQ 508
Cdd:PRK15429 679 KRLGIDK 685
|
|
| ACT_TyrR |
cd04877 |
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. ... |
1-74 |
3.15e-36 |
|
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence of cofactors or in the presence of phenylalanine alone, the TyrR protein exists as a dimer. However, in the presence of ATP and tyrosine the TyrR protein self-aggregates to form a hexamer. Members of this CD belong to the superfamily of ACT regulatory domains.
Pssm-ID: 153149 [Multi-domain] Cd Length: 74 Bit Score: 128.93 E-value: 3.15e-36
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 556413153 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPVGRIYLNFAEIEFNTFSSLMAEIRRIAGVTDVRTIPWMP 74
Cdd:cd04877 1 MRLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPKGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPYMP 74
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
227-432 |
3.57e-33 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 132.26 E-value: 3.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 227 TAPLLITGDTGTGKDLLAHAVHM---ASPRAAKPYLALNCASIPEDAVESELFGH-------APEGKKGFFEQANGGSVL 296
Cdd:COG4650 208 RAPILLTGPTGAGKSQLARRIYElkkARHQVSGRFVEVNCATLRGDGAMSALFGHvkgaftgAVSDRAGLLRSADGGVLF 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 297 LDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLNIPPLRDCPQD 376
Cdd:COG4650 288 LDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERRED 367
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 556413153 377 IMPLTELFVARFADEQGVpRPKLSADLGTVLTRYG------WPGNIRQLKNAVYRALTQLEG 432
Cdd:COG4650 368 IEPNLDYELARFAREQGR-RVRFNKEARARYLAFAtspealWSGNFRDLNASVTRMATLAEG 428
|
|
| HTH_TypR |
TIGR04381 |
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding ... |
460-508 |
1.38e-26 |
|
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding helix-turn-helix domain of several regulators of aromatic amino acid metabolism. Examples include TyrR in Escherichia coli and PhhR in Pseudomonas putida. Most members of this family have a sigma-54 interaction domain. [Regulatory functions, DNA interactions]
Pssm-ID: 275174 [Multi-domain] Cd Length: 49 Bit Score: 101.67 E-value: 1.38e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 556413153 460 SLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLNQ 508
Cdd:TIGR04381 1 SLDEIMKRFEASLLRRLYASYPSTRQLAKRLGVSHTAIANKLREYGIGK 49
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
211-369 |
2.09e-25 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 101.84 E-value: 2.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 211 PKMRHVLDQARKLANLT--APLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGH-APEGKKGFF 287
Cdd:cd00009 1 VGQEEAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHfLVRLLFELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 288 EQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRvgedhEVHVDVRVICATQKNLVELvqkgvFREDLYYRLNvLTLNI 367
Cdd:cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLLGD-----LDRALYDRLD-IRIVI 149
|
..
gi 556413153 368 PP 369
Cdd:cd00009 150 PL 151
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
229-423 |
2.28e-22 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 100.95 E-value: 2.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 229 PLLITGDTGTGKDLLAH-----AVHMASPRAAKPYLALNCA---SIPEdAVESELFGH-------APEGKKGFFEQANGG 293
Cdd:COG1221 132 HTLILGPTGVGKSFFAElmyeyAIEIGVLPEDAPFVVFNCAdyaNNPQ-LLMSQLFGYvkgaftgADKDKEGLIEKADGG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 294 SVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE-DHEVHVDVRVICATQKNLvelvqKGVF-----RedlyyRLNVlTLNI 367
Cdd:COG1221 211 ILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGEtEKTRKANVRIIFATTEDP-----ESSLlktflR-----RIPM-VIKL 279
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 556413153 368 PPLRDCP-QDIMPLTELFvarFADE-QGVPRP-KLSADLGTVLTRYGWPGNIRQLKNAV 423
Cdd:COG1221 280 PSLEERSlEERLELIKHF---FKEEaKRLNKPiKVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
207-370 |
7.33e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 80.08 E-value: 7.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 207 IAVSPKMRHVLDQARKLANLTAPLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDaveselfghapegkkgF 286
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLE----------------L 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 287 FEQANGGSVLLDEIGEMSPRMQAKLLRFLndgtfrRVGEDHevhvDVRVICATQKNLVELVQKGVFREDLYYRLNVLTLN 366
Cdd:pfam14532 65 LEQAKGGTLYLKDIADLSKALQKGLLLLL------AKAEGY----RVRLVCTSSKDLPQLAAAGLFDEQLYFELSALRLH 134
|
....
gi 556413153 367 IPPL 370
Cdd:pfam14532 135 VPPL 138
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
458-507 |
3.62e-15 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 69.37 E-value: 3.62e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 556413153 458 EGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLN 507
Cdd:pfam18024 1 EMSLKEYVSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRYGIS 50
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
229-360 |
1.01e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 229 PLLITGDTGTGKDLLAHAVHMASPRAAKPYLALNCASIPEDAVESELFGHAPEGKKGFF------------EQANGGSVL 296
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalaRKLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556413153 297 LDEIGEMSPRMQAKLLRFLNDgtfRRVGEDHEVHVDVRVICATQ--KNLVELVQKGVFREDLYYRL 360
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNdeKDLGPALLRRRFDRRIVLLL 146
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
82-140 |
8.04e-08 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 49.32 E-value: 8.04e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 556413153 82 LSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLDS 140
Cdd:smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEA 61
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
76-193 |
1.13e-07 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 53.70 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 76 EREHLALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFN-----FQRWLDSNPQNTHSE-- 148
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSplrelLERALAEGQPVTEREvt 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 556413153 149 HVVINGQNFLMEITPVYLKGENAArvlTGAVIMLR---STVRMGRQLQ 193
Cdd:COG3852 83 LRRKDGEERPVDVSVSPLRDAEGE---GGVLLVLRditERKRLERELR 127
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
89-139 |
3.14e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 40.31 E-value: 3.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 556413153 89 MPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLD 139
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRE 51
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
76-168 |
4.60e-04 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 42.64 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 76 EREHLALSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWLDSNPQNTHSEHVVIN-- 153
Cdd:COG5000 86 EERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPELDLAELLREALERGWQEEIELTrd 165
|
90
....*....|....*.
gi 556413153 154 -GQNFLMEITPVYLKG 168
Cdd:COG5000 166 gRRTLLVRASPLRDDG 181
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
82-134 |
1.73e-03 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 36.76 E-value: 1.73e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 556413153 82 LSALLEAMPEPFLSLDLKNKVERVNQASCQLFaqtQEKLIGHYATQFIPGFNF 134
Cdd:pfam13188 3 LRALFESSPDGILVLDEGGRIIYVNPAALELL---GYELLGELLGELLDLLDP 52
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
73-162 |
2.38e-03 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 40.34 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 73 MPSEREHLALS-------ALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPG------FNFQRWLD 139
Cdd:COG5809 1 MKSSKMELQLRkseqrfrSLFENAPDAILILDLEGKILKVNPAAERIFGYTEDELLGTNILDFLHPddekelREILKLLK 80
|
90 100
....*....|....*....|...
gi 556413153 140 SNPQNTHSEHVVINGQNFLMEIT 162
Cdd:COG5809 81 EGESRDELEFELRHKNGKRLEFS 103
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
230-339 |
2.73e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 37.96 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 230 LLITGDTGTGKDLLAHAVhmASpRAAKPYLALNCASIpedavESELFGHAPEGKKGFFEQANGGS---VLLDEI------ 300
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAV--AK-ELGAPFIEISGSEL-----VSKYVGESEKRLRELFEAAKKLApcvIFIDEIdalags 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 556413153 301 -----GEMSPRMQAKLLRFLNDGTFRrvgedhevHVDVRVICAT 339
Cdd:pfam00004 73 rgsggDSESRRVVNQLLTELDGFTSS--------NSKVIVIAAT 108
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
82-183 |
3.03e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 39.62 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 82 LSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIPGF-------NFQRWLDSNPQNTHSEHVVING 154
Cdd:COG2202 139 LRLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEdrerlleLLRRLLEGGRESYELELRLKDG 218
|
90 100
....*....|....*....|....*....
gi 556413153 155 QNFLMEITPVYLKGENAARVlTGAVIMLR 183
Cdd:COG2202 219 DGRWVWVEASAVPLRDGGEV-IGVLGIVR 246
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
82-130 |
5.06e-03 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 37.27 E-value: 5.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 556413153 82 LSALLEAMPEPFLSLDLKNKVERVNQASCQLFAQTQEKLIGHYATQFIP 130
Cdd:TIGR00229 5 YRAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIP 53
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
229-372 |
7.84e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 36.89 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 229 PLLITGDTGTGKDLLA-HAVHMASPRaakPYLALNCasiPEDAVESELFGH-APEGKKGFFEQA-------NGGSVLLDE 299
Cdd:pfam07728 1 GVLLVGPPGTGKTELAeRLAAALSNR---PVFYVQL---TRDTTEEDLFGRrNIDPGGASWVDGplvraarEGEIAVLDE 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556413153 300 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV---DVRVICATqknlvelvqkgvfrEDLYYRLNVLTlniPPLRD 372
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATM--------------NPLDRGLNELS---PALRS 133
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
99-183 |
8.81e-03 |
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PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 35.90 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556413153 99 KNKVERVNQASCQLFAQTQEKLIGHYATQFIPGFNFQRWL------DSNPQNTHSEHVVINGQNFLMEITPVYLKGENaa 172
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDSERLrealreGKAVREFEVVLYRKDGEPFPVLVSLAPIRDDG-- 78
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90
....*....|.
gi 556413153 173 RVLTGAVIMLR 183
Cdd:pfam13426 79 GELVGIIAILR 89
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