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Conserved domains on  [gi|556423791|ref|WP_023308718|]
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MULTISPECIES: Nramp family divalent metal transporter [Enterobacter]

Protein Classification

divalent metal cation transporter( domain architecture ID 10011492)

divalent metal cation transporter belonging to the NRAMP family, similar to the Escherichia coli MntH, which transports ions such as Mn2+ or Fe2+ across the cellular membrane

Gene Ontology:  GO:0046872|GO:0030001

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


:

Pssm-ID: 234815  Cd Length: 439  Bit Score: 603.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   1 MTNSRVEGSSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  81 LAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 161 LLFVAAAYIVELIFSQPNLVQLGKGMaIPS---LPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGTRKERYS 233
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGF-IPSseiLPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALR 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 234 ATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVV 313
Cdd:PRK00701 255 FTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIV 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 314 MQGFVRFHIPLWVRRSVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNSTLVK 387
Cdd:PRK00701 335 MEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVK 414
                        410       420
                 ....*....|....*....|....*
gi 556423791 388 RTGWAIVVVVVALNLWLLVGTALGL 412
Cdd:PRK00701 415 IIAWIIAVLIVALNIYLLYQTFTGL 439
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 603.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   1 MTNSRVEGSSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  81 LAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 161 LLFVAAAYIVELIFSQPNLVQLGKGMaIPS---LPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGTRKERYS 233
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGF-IPSseiLPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALR 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 234 ATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVV 313
Cdd:PRK00701 255 FTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIV 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 314 MQGFVRFHIPLWVRRSVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNSTLVK 387
Cdd:PRK00701 335 MEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVK 414
                        410       420
                 ....*....|....*....|....*
gi 556423791 388 RTGWAIVVVVVALNLWLLVGTALGL 412
Cdd:PRK00701 415 IIAWIIAVLIVALNIYLLYQTFTGL 439
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
38-383 4.40e-123

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 360.73  E-value: 4.40e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   38 FATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAA 117
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  118 IGFKLILGVSLLQGAVLTGIATFLILMlQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLVQLGKGMAIPSLPTSEAV 197
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  198 FLAAGVLGATIMPHVIYLHSSLTQ----HLHGGTRKERYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLD 273
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQergwTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  274 QAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRSVT----MLPSFIVILMGLDPT--R 347
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGvvQ 319
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 556423791  348 ILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNS 383
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNS 355
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
9-411 8.64e-123

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 361.77  E-value: 8.64e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   9 SSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDH 88
Cdd:COG1914    1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  89 YPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMlqRRGQKPLEKVIGGLLLFVAAAY 168
Cdd:COG1914   81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 169 IVELIFSQPNLVQLGKGMAIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHlHGGTRKERYSATKWDVAIAMTIAGF 248
Cdd:COG1914  159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQE-KGWTGKEDLRYARLDTVVGMLLAGL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 249 VNLAMMATAAAAFHFNGHtGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRR 328
Cdd:COG1914  238 VNLAILLLAAAVLHGTGI-GVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLWLRR 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 329 S------VTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNSTLVKRTGWAIVVVVVALNL 402
Cdd:COG1914  317 FylvtrlLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIVLLIVVLNL 396

                 ....*....
gi 556423791 403 WLLVGTALG 411
Cdd:COG1914  397 YLLVSTLFG 405
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
15-377 1.84e-105

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 317.05  E-value: 1.84e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   15 RKLrFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYPRPAV 94
Cdd:TIGR01197   1 RKL-WAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   95 WLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIF 174
Cdd:TIGR01197  80 ITLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  175 SQPNLVQLGKGMAIPSLP--TSEAVFLAAGVLGATIMPHVIYLHSSLTQ-HLHGGTRKERYSATKW-------------- 237
Cdd:TIGR01197 160 AKPGQVKVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQsRLVDRDVKEGVSEANMyrpieaaialsvsf 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  238 ---DVAIAM-TIAGFVNLAMMATAAAAFHF-NGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQV 312
Cdd:TIGR01197 240 sinEFVIALfTAALFVNTNILVVAGATLFNsNNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQF 319
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556423791  313 VMQGFVRFHIPLWVRRSVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLM 377
Cdd:TIGR01197 320 VMEGFLNWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
23-376 1.29e-91

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 281.95  E-value: 1.29e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  23 GPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYpRPAVWLYWVQAE 102
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 103 IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL--LLFVAAAYIVELIFSQPNLV 180
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKvgLLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 181 QLGKGMAIPSLPTSE--AVFLA----AGVLGATIMPHVIYLHSS----------LTQHLHGGTRKERYSAT--------- 235
Cdd:NF037982 160 ALGAGVLFPQLPDGDlfAVLLGaiafAGAGGAQNMVQSNWLRDKgfgmgshvprLTSRVTGETEAEPSTGYmfptdeenl 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 236 ----------KWDVAIAMTIAGFVNLAMMATAAA-AFHFNGH--TGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSS 302
Cdd:NF037982 240 arwrgwwrvaNFDQLIAFWLIGFINISMLSVLAAaTFFGSGSlaNDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 303 TV-----VGTLAGQVVMQGFVRF-------HIPLWVRRSVTMLPSFIVILMGLDPTRILVMSQVLLSFGIaLALVPLLIF 370
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGM-FAYSILLLL 398

                 ....*.
gi 556423791 371 TSNKNL 376
Cdd:NF037982 399 LNRRRL 404
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 603.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   1 MTNSRVEGSSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  81 LAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 161 LLFVAAAYIVELIFSQPNLVQLGKGMaIPS---LPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGTRKERYS 233
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGF-IPSseiLPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALR 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 234 ATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVV 313
Cdd:PRK00701 255 FTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIV 334
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 314 MQGFVRFHIPLWVRRSVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNSTLVK 387
Cdd:PRK00701 335 MEGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVK 414
                        410       420
                 ....*....|....*....|....*
gi 556423791 388 RTGWAIVVVVVALNLWLLVGTALGL 412
Cdd:PRK00701 415 IIAWIIAVLIVALNIYLLYQTFTGL 439
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
38-383 4.40e-123

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 360.73  E-value: 4.40e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   38 FATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYPRPAVWLYWVQAEIIAMATDLAEFIGAA 117
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  118 IGFKLILGVSLLQGAVLTGIATFLILMlQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLVQLGKGMAIPSLPTSEAV 197
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  198 FLAAGVLGATIMPHVIYLHSSLTQ----HLHGGTRKERYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFNGHTGIADLD 273
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQergwTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  274 QAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRSVT----MLPSFIVILMGLDPT--R 347
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGvvQ 319
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 556423791  348 ILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNS 383
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNS 355
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
9-411 8.64e-123

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 361.77  E-value: 8.64e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   9 SSGRAARKLRFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDH 88
Cdd:COG1914    1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  89 YPRPAVWLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMlqRRGQKPLEKVIGGLLLFVAAAY 168
Cdd:COG1914   81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 169 IVELIFSQPNLVQLGKGMAIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHlHGGTRKERYSATKWDVAIAMTIAGF 248
Cdd:COG1914  159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQE-KGWTGKEDLRYARLDTVVGMLLAGL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 249 VNLAMMATAAAAFHFNGHtGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRR 328
Cdd:COG1914  238 VNLAILLLAAAVLHGTGI-GVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLWLRR 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 329 S------VTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLMGELVNSTLVKRTGWAIVVVVVALNL 402
Cdd:COG1914  317 FylvtrlLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIVLLIVVLNL 396

                 ....*....
gi 556423791 403 WLLVGTALG 411
Cdd:COG1914  397 YLLVSTLFG 405
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
15-377 1.84e-105

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 317.05  E-value: 1.84e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   15 RKLrFALMGPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYPRPAV 94
Cdd:TIGR01197   1 RKL-WAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791   95 WLYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIF 174
Cdd:TIGR01197  80 ITLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  175 SQPNLVQLGKGMAIPSLP--TSEAVFLAAGVLGATIMPHVIYLHSSLTQ-HLHGGTRKERYSATKW-------------- 237
Cdd:TIGR01197 160 AKPGQVKVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQsRLVDRDVKEGVSEANMyrpieaaialsvsf 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  238 ---DVAIAM-TIAGFVNLAMMATAAAAFHF-NGHTGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSSTVVGTLAGQV 312
Cdd:TIGR01197 240 sinEFVIALfTAALFVNTNILVVAGATLFNsNNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQF 319
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556423791  313 VMQGFVRFHIPLWVRRSVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSNKNLM 377
Cdd:TIGR01197 320 VMEGFLNWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
23-376 1.29e-91

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 281.95  E-value: 1.29e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791  23 GPAFIAAIGYIDPGNFATNIQAGASFGYKLLWVVVWANLMAMLIQMLSAKLGIATGKNLAEQIRDHYpRPAVWLYWVQAE 102
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 103 IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL--LLFVAAAYIVELIFSQPNLV 180
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKvgLLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 181 QLGKGMAIPSLPTSE--AVFLA----AGVLGATIMPHVIYLHSS----------LTQHLHGGTRKERYSAT--------- 235
Cdd:NF037982 160 ALGAGVLFPQLPDGDlfAVLLGaiafAGAGGAQNMVQSNWLRDKgfgmgshvprLTSRVTGETEAEPSTGYmfptdeenl 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 236 ----------KWDVAIAMTIAGFVNLAMMATAAA-AFHFNGH--TGIADLDQAYLTLEPLLSHAAATIFGLSLVAAGLSS 302
Cdd:NF037982 240 arwrgwwrvaNFDQLIAFWLIGFINISMLSVLAAaTFFGSGSlaNDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556423791 303 TV-----VGTLAGQVVMQGFVRF-------HIPLWVRRSVTMLPSFIVILMGLDPTRILVMSQVLLSFGIaLALVPLLIF 370
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGM-FAYSILLLL 398

                 ....*.
gi 556423791 371 TSNKNL 376
Cdd:NF037982 399 LNRRRL 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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